{"id":"https://openalex.org/W2119757707","doi":"https://doi.org/10.1186/1471-2105-15-s16-s9","title":"IFACEwat: the interfacial water-implemented re-ranking algorithm to improve the discrimination of near native structures for protein rigid docking","display_name":"IFACEwat: the interfacial water-implemented re-ranking algorithm to improve the discrimination of near native structures for protein rigid docking","publication_year":2014,"publication_date":"2014-12-01","ids":{"openalex":"https://openalex.org/W2119757707","doi":"https://doi.org/10.1186/1471-2105-15-s16-s9","mag":"2119757707","pmid":"https://pubmed.ncbi.nlm.nih.gov/25521441"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-s16-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s16-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S16-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S16-S9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047413000","display_name":"Chinh Tran-To Su","orcid":"https://orcid.org/0000-0001-6465-5987"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":true,"raw_author_name":"Chinh Tran-To Su","raw_affiliation_strings":["Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063614815","display_name":"Thuy-Diem Nguyen","orcid":null},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Thuy-Diem Nguyen","raw_affiliation_strings":["Parallel and Distributed Computing Centre, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","Parallel and Distributed Computing Centre, School of Computer Engineering, Nanyang Technological University, Singapore#TAB#"],"affiliations":[{"raw_affiliation_string":"Parallel and Distributed Computing Centre, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Parallel and Distributed Computing Centre, School of Computer Engineering, Nanyang Technological University, Singapore#TAB#","institution_ids":["https://openalex.org/I172675005"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5014529529","display_name":"Jie Zheng","orcid":"https://orcid.org/0000-0001-6774-9786"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]},{"id":"https://openalex.org/I115228651","display_name":"Agency for Science, Technology and Research","ror":"https://ror.org/036wvzt09","country_code":"SG","type":"government","lineage":["https://openalex.org/I115228651"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Jie Zheng","raw_affiliation_strings":["Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","Genome Institute of Singapore, Agency for Science, Technology, and Research (A*STAR), Biopolis, Singapore, 138672","Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, , Singapore","Genome Institute of Singapore, Agency for Science, Technology, and Research (A*STAR), Biopolis, , Singapore"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Genome Institute of Singapore, Agency for Science, Technology, and Research (A*STAR), Biopolis, Singapore, 138672","institution_ids":["https://openalex.org/I115228651"]},{"raw_affiliation_string":"Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, , Singapore","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Genome Institute of Singapore, Agency for Science, Technology, and Research (A*STAR), Biopolis, , Singapore","institution_ids":["https://openalex.org/I115228651"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5027208445","display_name":"Chee Keong Kwoh","orcid":"https://orcid.org/0000-0002-8547-6387"},"institutions":[{"id":"https://openalex.org/I172675005","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302","country_code":"SG","type":"education","lineage":["https://openalex.org/I172675005"]}],"countries":["SG"],"is_corresponding":false,"raw_author_name":"Chee-Keong Kwoh","raw_affiliation_strings":["Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore"],"affiliations":[{"raw_affiliation_string":"Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore, 639798","institution_ids":["https://openalex.org/I172675005"]},{"raw_affiliation_string":"Bioinformatics Research Center, School of Computer Engineering, Nanyang Technological University, Singapore","institution_ids":["https://openalex.org/I172675005"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5047413000"],"corresponding_institution_ids":["https://openalex.org/I172675005"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.5704,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.67869403,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"15","issue":"S16","first_page":"S9","last_page":"S9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.9965000152587891,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.9955999851226807,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8127989768981934},{"id":"https://openalex.org/keywords/ranking","display_name":"Ranking (information retrieval)","score":0.5264495015144348},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4707931578159332},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.39145272970199585},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.33108407258987427},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.3245142102241516},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3026748299598694},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.07651349902153015}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8127989768981934},{"id":"https://openalex.org/C189430467","wikidata":"https://www.wikidata.org/wiki/Q7293293","display_name":"Ranking (information retrieval)","level":2,"score":0.5264495015144348},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4707931578159332},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.39145272970199585},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.33108407258987427},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.3245142102241516},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3026748299598694},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.07651349902153015},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000936","descriptor_name":"Antigen-Antibody Complex","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006860","descriptor_name":"Hydrogen Bonding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014867","descriptor_name":"Water","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-15-s16-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s16-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S16-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25521441","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25521441","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:dr.ntu.edu.sg:10356/81496","is_oa":true,"landing_page_url":"http://hdl.handle.net/10220/40818","pdf_url":null,"source":{"id":"https://openalex.org/S4306402609","display_name":"DR-NTU (Nanyang Technological University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I172675005","host_organization_name":"Nanyang Technological University","host_organization_lineage":["https://openalex.org/I172675005"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4290663","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4290663","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-s16-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s16-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S16-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/10","display_name":"Reduced inequalities","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G2941906397","display_name":null,"funder_award_id":"MOE AcRF Tier 1","funder_id":"https://openalex.org/F4320320766","funder_display_name":"Nanyang Technological University"},{"id":"https://openalex.org/G3048563442","display_name":null,"funder_award_id":"Tier 1","funder_id":"https://openalex.org/F4320320766","funder_display_name":"Nanyang Technological University"},{"id":"https://openalex.org/G3166788989","display_name":null,"funder_award_id":"Tier 1 grant","funder_id":"https://openalex.org/F4320320766","funder_display_name":"Nanyang Technological University"}],"funders":[{"id":"https://openalex.org/F4320320766","display_name":"Nanyang Technological University","ror":"https://ror.org/02e7b5302"},{"id":"https://openalex.org/F4320322724","display_name":"Ministry of Education, India","ror":"https://ror.org/048xjjh50"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2119757707.pdf","grobid_xml":"https://content.openalex.org/works/W2119757707.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1964167423","https://openalex.org/W1967751997","https://openalex.org/W1974909022","https://openalex.org/W1985724808","https://openalex.org/W1993951624","https://openalex.org/W2000443388","https://openalex.org/W2007584318","https://openalex.org/W2008380486","https://openalex.org/W2008679330","https://openalex.org/W2009001257","https://openalex.org/W2010512513","https://openalex.org/W2017117646","https://openalex.org/W2029751764","https://openalex.org/W2055905702","https://openalex.org/W2070745557","https://openalex.org/W2086635082","https://openalex.org/W2091734240","https://openalex.org/W2095805596","https://openalex.org/W2099861795","https://openalex.org/W2101395824","https://openalex.org/W2101622956","https://openalex.org/W2105417856","https://openalex.org/W2110585060","https://openalex.org/W2118514515","https://openalex.org/W2119333768","https://openalex.org/W2129454543","https://openalex.org/W2130390259","https://openalex.org/W2133712572","https://openalex.org/W2133842820","https://openalex.org/W2134636873","https://openalex.org/W2145154167","https://openalex.org/W2145381994","https://openalex.org/W2145793759","https://openalex.org/W2151581834","https://openalex.org/W2153731681","https://openalex.org/W2157991822","https://openalex.org/W2163591503","https://openalex.org/W2316840221","https://openalex.org/W2786774014","https://openalex.org/W2915344963"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2188500270","https://openalex.org/W2303858293","https://openalex.org/W2544423928","https://openalex.org/W2915512527","https://openalex.org/W2053286651","https://openalex.org/W2798198862","https://openalex.org/W51364034","https://openalex.org/W2798997222"],"abstract_inverted_index":{"With":[0],"the":[1,6,12,29,34,45,55,62,68,73,76,89,96,103],"inclusion":[2],"of":[3,11,31,61,75,91],"interfacial":[4],"water,":[5],"IFACEwat":[7,56],"improves":[8,67],"mostly":[9],"results":[10,90],"initial":[13,46,63,117],"rigid":[14,47,118],"docking,":[15],"especially":[16],"for":[17,95,115],"Antigen/Antibody":[18,97],"complexes.":[19],"The":[20],"improvement":[21],"is":[22,100],"achieved":[23],"by":[24,44],"explicitly":[25],"taking":[26],"into":[27],"account":[28],"contribution":[30],"water":[32],"during":[33],"protein":[35],"interactions,":[36],"which":[37],"was":[38],"ignored":[39],"or":[40],"not":[41],"fully":[42],"presented":[43],"docking":[48,64,119],"and":[49,93],"other":[50,116],"re-ranking":[51],"techniques.":[52],"In":[53],"addition,":[54],"maintains":[57],"sufficient":[58],"computational":[59],"efficiency":[60],"algorithm,":[65],"yet":[66],"ranks":[69],"as":[70,72],"well":[71],"number":[74],"near":[77,104],"native":[78],"structures":[79],"found.":[80],"As":[81],"our":[82],"implementation":[83],"so":[84],"far":[85],"targeted":[86],"to":[87,112],"improve":[88],"ZDOCK3.0.2,":[92],"particularly":[94],"complexes,":[98],"it":[99],"expected":[101],"in":[102],"future":[105],"that":[106],"more":[107],"implementations":[108],"will":[109],"be":[110,113],"conducted":[111],"applicable":[114],"algorithms.":[120]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
