{"id":"https://openalex.org/W2027550567","doi":"https://doi.org/10.1186/1471-2105-15-s10-p16","title":"Heatmap3: an improved heatmap package with more powerful and convenient features","display_name":"Heatmap3: an improved heatmap package with more powerful and convenient features","publication_year":2014,"publication_date":"2014-09-29","ids":{"openalex":"https://openalex.org/W2027550567","doi":"https://doi.org/10.1186/1471-2105-15-s10-p16","mag":"2027550567"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-s10-p16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s10-p16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S10-P16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S10-P16","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101974311","display_name":"Shilin Zhao","orcid":"https://orcid.org/0000-0002-3787-8111"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Shilin Zhao","raw_affiliation_strings":["Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","Center for Quantitative Sciences, Vanderbilt University, Nashville, USA"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5056796466","display_name":"Yan Guo","orcid":"https://orcid.org/0000-0001-5252-3960"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yan Guo","raw_affiliation_strings":["Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","Center for Quantitative Sciences, Vanderbilt University, Nashville, USA"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040171040","display_name":"Quanhu Sheng","orcid":"https://orcid.org/0000-0001-8951-9295"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Quanhu Sheng","raw_affiliation_strings":["Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","Center for Quantitative Sciences, Vanderbilt University, Nashville, USA"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, USA","institution_ids":["https://openalex.org/I200719446"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5062656698","display_name":"Yu Shyr","orcid":"https://orcid.org/0000-0003-2086-9670"},"institutions":[{"id":"https://openalex.org/I200719446","display_name":"Vanderbilt University","ror":"https://ror.org/02vm5rt34","country_code":"US","type":"education","lineage":["https://openalex.org/I200719446"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yu Shyr","raw_affiliation_strings":["Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","Center for Quantitative Sciences, Vanderbilt University, Nashville, USA"],"affiliations":[{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, TN, 37027, USA","institution_ids":["https://openalex.org/I200719446"]},{"raw_affiliation_string":"Center for Quantitative Sciences, Vanderbilt University, Nashville, USA","institution_ids":["https://openalex.org/I200719446"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5101974311"],"corresponding_institution_ids":["https://openalex.org/I200719446"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.5656,"has_fulltext":true,"cited_by_count":216,"citation_normalized_percentile":{"value":0.82299993,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":96,"max":100},"biblio":{"volume":"15","issue":"S10","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8664000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.8664000034332275,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11975","display_name":"Evolutionary Algorithms and Applications","score":0.8482999801635742,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13398","display_name":"Data Analysis with R","score":0.8234000205993652,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/r-package","display_name":"R package","score":0.7108721733093262},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6071078181266785},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.49945950508117676},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4393717050552368},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.364909291267395},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.21082037687301636},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.20282840728759766},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13571974635124207}],"concepts":[{"id":"https://openalex.org/C2984074130","wikidata":"https://www.wikidata.org/wiki/Q73539779","display_name":"R package","level":2,"score":0.7108721733093262},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6071078181266785},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.49945950508117676},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4393717050552368},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.364909291267395},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.21082037687301636},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.20282840728759766},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13571974635124207},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[],"locations_count":2,"locations":[{"id":"doi:10.1186/1471-2105-15-s10-p16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s10-p16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S10-P16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4196034","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4196034","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-s10-p16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s10-p16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S10-P16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy","score":0.41999998688697815}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2027550567.pdf","grobid_xml":"https://content.openalex.org/works/W2027550567.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2899084033","https://openalex.org/W2748952813","https://openalex.org/W2390279801","https://openalex.org/W2358668433","https://openalex.org/W2376932109","https://openalex.org/W2382290278","https://openalex.org/W2350741829","https://openalex.org/W2130043461","https://openalex.org/W2530322880","https://openalex.org/W1596801655"],"abstract_inverted_index":{"Heat":[0],"map":[1,18],"and":[2,16,38,61,64],"clustering":[3,15],"are":[4],"used":[5],"frequently":[6],"in":[7,26,34],"expression":[8],"analysis":[9],"studies":[10],"for":[11],"data":[12],"visualization.":[13],"Simple":[14],"heat":[17],"can":[19],"be":[20],"produced":[21],"from":[22],"the":[23,54],"\"heatmap\"":[24],"function":[25],"R":[27,47],"language.":[28],"However,":[29],"it":[30],"has":[31],"some":[32],"limitations":[33],"producing":[35],"advanced":[36],"graphics":[37],"is":[39],"not":[40],"highly":[41,67],"customizable.":[42],"Thus,":[43],"we":[44],"developed":[45],"an":[46],"package":[48],"heatmap":[49,56],"3":[50],"which":[51],"significantly":[52],"improves":[53],"original":[55],"by":[57],"adding":[58],"more":[59],"powerful":[60],"convenient":[62],"features":[63],"providing":[65],"a":[66],"customizable":[68],"interface.":[69]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":12},{"year":2024,"cited_by_count":27},{"year":2023,"cited_by_count":26},{"year":2022,"cited_by_count":26},{"year":2021,"cited_by_count":55},{"year":2020,"cited_by_count":24},{"year":2019,"cited_by_count":17},{"year":2018,"cited_by_count":16},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":3}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
