{"id":"https://openalex.org/W2126543222","doi":"https://doi.org/10.1186/1471-2105-15-s1-s5","title":"ProphNet: A generic prioritization method through propagation of information","display_name":"ProphNet: A generic prioritization method through propagation of information","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2126543222","doi":"https://doi.org/10.1186/1471-2105-15-s1-s5","mag":"2126543222","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564336"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101642392","display_name":"V\u00edctor Mart\u00ednez","orcid":"https://orcid.org/0000-0002-0560-8096"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":true,"raw_author_name":"V\u00edctor Mart\u00ednez","raw_affiliation_strings":["Department of Computer Science and AI, University of Granada, Granada, 18071, Spain","Department of Computer Science and AI, University of Granada, Granada, Spain#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and AI, University of Granada, Granada, 18071, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Science and AI, University of Granada, Granada, Spain#TAB#","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006253386","display_name":"Carlos Cano","orcid":"https://orcid.org/0000-0002-0181-2444"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Carlos Cano","raw_affiliation_strings":["Department of Computer Science and AI, University of Granada, Granada, 18071, Spain","Department of Computer Science and AI, University of Granada, Granada, Spain#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and AI, University of Granada, Granada, 18071, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Science and AI, University of Granada, Granada, Spain#TAB#","institution_ids":["https://openalex.org/I173304897"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5056119957","display_name":"Armando Blanco","orcid":"https://orcid.org/0000-0001-6672-1917"},"institutions":[{"id":"https://openalex.org/I173304897","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449","country_code":"ES","type":"education","lineage":["https://openalex.org/I173304897"]}],"countries":["ES"],"is_corresponding":false,"raw_author_name":"Armando Blanco","raw_affiliation_strings":["Department of Computer Science and AI, University of Granada, Granada, 18071, Spain","Department of Computer Science and AI, University of Granada, Granada, Spain#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science and AI, University of Granada, Granada, 18071, Spain","institution_ids":["https://openalex.org/I173304897"]},{"raw_affiliation_string":"Department of Computer Science and AI, University of Granada, Granada, Spain#TAB#","institution_ids":["https://openalex.org/I173304897"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5101642392"],"corresponding_institution_ids":["https://openalex.org/I173304897"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.1349,"has_fulltext":true,"cited_by_count":44,"citation_normalized_percentile":{"value":0.87652721,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"S1","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":1.0,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9994000196456909,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9957000017166138,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/prioritization","display_name":"Prioritization","score":0.772606372833252},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7437440752983093},{"id":"https://openalex.org/keywords/rank","display_name":"Rank (graph theory)","score":0.5543559789657593},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5214585661888123},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.4449955224990845},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.4344730079174042},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.4243849515914917},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.4162186086177826},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3870507478713989},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.2842479944229126},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14078772068023682}],"concepts":[{"id":"https://openalex.org/C2777615720","wikidata":"https://www.wikidata.org/wiki/Q11888847","display_name":"Prioritization","level":2,"score":0.772606372833252},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7437440752983093},{"id":"https://openalex.org/C164226766","wikidata":"https://www.wikidata.org/wiki/Q7293202","display_name":"Rank (graph theory)","level":2,"score":0.5543559789657593},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5214585661888123},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.4449955224990845},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.4344730079174042},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.4243849515914917},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.4162186086177826},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3870507478713989},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.2842479944229126},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14078772068023682},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C539667460","wikidata":"https://www.wikidata.org/wiki/Q2414942","display_name":"Management science","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003920","descriptor_name":"Diabetes Mellitus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005796","descriptor_name":"Genes","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020022","descriptor_name":"Genetic Predisposition to Disease","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-15-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564336","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564336","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:digibug.ugr.es:10481/34975","is_oa":false,"landing_page_url":"http://hdl.handle.net/10481/34975","pdf_url":null,"source":{"id":"https://openalex.org/S4306400567","display_name":"Institutional Repository of the University of Granada (University of Granada)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I173304897","host_organization_name":"Universidad de Granada","host_organization_lineage":["https://openalex.org/I173304897"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:3005801","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4015146","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-s1-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","score":0.4399999976158142,"display_name":"Good health and well-being"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320323834","display_name":"Universidad de Granada","ror":"https://ror.org/04njjy449"},{"id":"https://openalex.org/F4320335160","display_name":"Direcci\u00f3n General de Investigaci\u00f3n Cient\u00edfica y T\u00e9cnica","ror":"https://ror.org/034900433"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2126543222.pdf","grobid_xml":"https://content.openalex.org/works/W2126543222.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W121547895","https://openalex.org/W1595324721","https://openalex.org/W1605637875","https://openalex.org/W1971859296","https://openalex.org/W1974139890","https://openalex.org/W1977937646","https://openalex.org/W1978491952","https://openalex.org/W1980926095","https://openalex.org/W1981276685","https://openalex.org/W1986512768","https://openalex.org/W2002150942","https://openalex.org/W2021986426","https://openalex.org/W2038122249","https://openalex.org/W2040022355","https://openalex.org/W2045257132","https://openalex.org/W2048497257","https://openalex.org/W2051314090","https://openalex.org/W2052378222","https://openalex.org/W2058005740","https://openalex.org/W2062533676","https://openalex.org/W2068497347","https://openalex.org/W2073038311","https://openalex.org/W2073887808","https://openalex.org/W2090247362","https://openalex.org/W2097498614","https://openalex.org/W2100582962","https://openalex.org/W2102863780","https://openalex.org/W2109555487","https://openalex.org/W2110684048","https://openalex.org/W2117024463","https://openalex.org/W2119220491","https://openalex.org/W2119412782","https://openalex.org/W2120059431","https://openalex.org/W2132056568","https://openalex.org/W2134672568","https://openalex.org/W2136280642","https://openalex.org/W2138650839","https://openalex.org/W2139425371","https://openalex.org/W2141986239","https://openalex.org/W2142304903","https://openalex.org/W2154455818","https://openalex.org/W2154654747","https://openalex.org/W2155078339","https://openalex.org/W2155295585","https://openalex.org/W2162285332","https://openalex.org/W2163296862","https://openalex.org/W2169174186","https://openalex.org/W2612972698"],"related_works":["https://openalex.org/W2081647779","https://openalex.org/W2914887895","https://openalex.org/W4237750775","https://openalex.org/W2132701336","https://openalex.org/W2344709999","https://openalex.org/W2623347760","https://openalex.org/W2068265187","https://openalex.org/W2202454811","https://openalex.org/W4253478040","https://openalex.org/W2903112877"],"abstract_inverted_index":{"ProphNet":[0,65],"works":[1,41],"on":[2],"top":[3],"of":[4,11,14,20,28,34,36,63,73],"any":[5],"heterogeneous":[6],"network":[7],"by":[8,42],"integrating":[9],"information":[10,44],"different":[12],"types":[13],"biological":[15],"entities":[16,19,35],"to":[17,25],"rank":[18],"a":[21,31,57,60],"specific":[22],"type":[23],"according":[24],"their":[26],"degree":[27],"relationship":[29],"with":[30],"query":[32,58],"set":[33],"another":[37],"type.":[38],"Our":[39],"method":[40],"propagating":[43],"across":[45],"data":[46],"networks":[47],"and":[48,59],"measuring":[49],"the":[50,53,74,80],"correlation":[51],"between":[52],"propagated":[54],"values":[55],"for":[56],"target":[61],"sets":[62],"entities.":[64],"is":[66,76],"available":[67,78],"at:":[68],"http://genome2.ugr.es/prophnet.":[69],"A":[70],"Matlab":[71],"implementation":[72],"algorithm":[75],"also":[77],"at":[79],"website.":[81]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":5},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":6},{"year":2017,"cited_by_count":5},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
