{"id":"https://openalex.org/W1985036270","doi":"https://doi.org/10.1186/1471-2105-15-s1-s12","title":"Distilling structure in Taverna scientific workflows: a refactoring approach","display_name":"Distilling structure in Taverna scientific workflows: a refactoring approach","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W1985036270","doi":"https://doi.org/10.1186/1471-2105-15-s1-s12","mag":"1985036270","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564760"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-s1-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S12","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067733747","display_name":"Sarah Cohen\u2010Boulakia","orcid":"https://orcid.org/0000-0002-7439-1441"},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Sarah Cohen-Boulakia","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","AMIB group, INRIA Saclay, , France","Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit\u00e9 Paris Sud, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"AMIB group, INRIA Saclay, , France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit\u00e9 Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083230352","display_name":"Jiuqiang Chen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I76214153","display_name":"Lanzhou University","ror":"https://ror.org/01mkqqe32","country_code":"CN","type":"education","lineage":["https://openalex.org/I76214153"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["CN","FR"],"is_corresponding":false,"raw_author_name":"Jiuqiang Chen","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","AMIB group, INRIA Saclay, , France","Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit\u00e9 Paris Sud, , France","School of Information Science and Engineering, Lanzhou University, Lanzhou, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"AMIB group, INRIA Saclay, , France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit\u00e9 Paris Sud, , France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"School of Information Science and Engineering, Lanzhou University, Lanzhou, China","institution_ids":["https://openalex.org/I76214153"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018918066","display_name":"Paolo Missier","orcid":"https://orcid.org/0000-0002-0978-2446"},"institutions":[{"id":"https://openalex.org/I84884186","display_name":"Newcastle University","ror":"https://ror.org/01kj2bm70","country_code":"GB","type":"education","lineage":["https://openalex.org/I84884186"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Paolo Missier","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","University of Newcastle, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"University of Newcastle, UK","institution_ids":["https://openalex.org/I84884186"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027899893","display_name":"Carole Goble","orcid":"https://orcid.org/0000-0003-1219-2137"},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Carole Goble","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","University of Manchester (UK)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"University of Manchester (UK)","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074143964","display_name":"Alan Williams","orcid":"https://orcid.org/0000-0003-3156-2105"},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I28407311","display_name":"University of Manchester","ror":"https://ror.org/027m9bs27","country_code":"GB","type":"education","lineage":["https://openalex.org/I28407311"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]}],"countries":["FR","GB"],"is_corresponding":false,"raw_author_name":"Alan R Williams","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","University of Manchester (UK)"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"University of Manchester (UK)","institution_ids":["https://openalex.org/I28407311"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5108780815","display_name":"Christine Froidevaux","orcid":null},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christine Froidevaux","raw_affiliation_strings":["Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit\u00e9 Paris Sud, France","AMIB group, INRIA Saclay, , France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I4210144804","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"Laboratoire de Recherche en Informatique, CNRS UMR 8623, Universit\u00e9 Paris Sud, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590"]},{"raw_affiliation_string":"AMIB group, INRIA Saclay, , France","institution_ids":["https://openalex.org/I1326498283"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5067733747"],"corresponding_institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":12.3436,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.9829617,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"15","issue":"S1","first_page":"S12","last_page":"S12"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9898999929428101,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10715","display_name":"Distributed and Parallel Computing Systems","score":0.0017999999690800905,"subfield":{"id":"https://openalex.org/subfields/1705","display_name":"Computer Networks and Communications"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11937","display_name":"Research Data Management Practices","score":0.00139999995008111,"subfield":{"id":"https://openalex.org/subfields/1710","display_name":"Information Systems"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.8927652835845947},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8146425485610962},{"id":"https://openalex.org/keywords/code-refactoring","display_name":"Code refactoring","score":0.6869657039642334},{"id":"https://openalex.org/keywords/dataflow","display_name":"Dataflow","score":0.5001428127288818},{"id":"https://openalex.org/keywords/software-engineering","display_name":"Software engineering","score":0.4742542803287506},{"id":"https://openalex.org/keywords/reuse","display_name":"Reuse","score":0.45636340975761414},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4173769950866699},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.41666731238365173},{"id":"https://openalex.org/keywords/exploit","display_name":"Exploit","score":0.41465532779693604},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.337118923664093},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2901320159435272},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.18020862340927124},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.17772862315177917}],"concepts":[{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.8927652835845947},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8146425485610962},{"id":"https://openalex.org/C152752567","wikidata":"https://www.wikidata.org/wiki/Q116877","display_name":"Code refactoring","level":3,"score":0.6869657039642334},{"id":"https://openalex.org/C96324660","wikidata":"https://www.wikidata.org/wiki/Q205446","display_name":"Dataflow","level":2,"score":0.5001428127288818},{"id":"https://openalex.org/C115903868","wikidata":"https://www.wikidata.org/wiki/Q80993","display_name":"Software engineering","level":1,"score":0.4742542803287506},{"id":"https://openalex.org/C206588197","wikidata":"https://www.wikidata.org/wiki/Q846574","display_name":"Reuse","level":2,"score":0.45636340975761414},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4173769950866699},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.41666731238365173},{"id":"https://openalex.org/C165696696","wikidata":"https://www.wikidata.org/wiki/Q11287","display_name":"Exploit","level":2,"score":0.41465532779693604},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.337118923664093},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2901320159435272},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.18020862340927124},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.17772862315177917},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0},{"id":"https://openalex.org/C38652104","wikidata":"https://www.wikidata.org/wiki/Q3510521","display_name":"Computer security","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057188","descriptor_name":"Workflow","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-15-s1-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564760","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564760","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:ir.lzu.edu.cn/:262010/116260","is_oa":true,"landing_page_url":"http://ir.lzu.edu.cn/handle/262010/116260","pdf_url":null,"source":{"id":"https://openalex.org/S4406923049","display_name":"Lanzhou University Institutional Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:eprint.ncl.ac.uk:234524","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306402485","display_name":"Newcastle University ePrints (Newcastle Univesity)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I84884186","host_organization_name":"Newcastle University","host_organization_lineage":["https://openalex.org/I84884186"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":""},{"id":"pmh:oai:europepmc.org:3005903","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4016501","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/06016943-5c22-46a3-9b1d-614529414c7c","is_oa":true,"landing_page_url":"https://research.birmingham.ac.uk/en/publications/06016943-5c22-46a3-9b1d-614529414c7c","pdf_url":null,"source":{"id":"https://openalex.org/S4306402634","display_name":"University of Birmingham Research Portal (University of Birmingham)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I79619799","host_organization_name":"University of Birmingham","host_organization_lineage":["https://openalex.org/I79619799"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cohen-Boulakia , S , Chen , J , Missier , P , Goble , C , Williams , A R & Froidevaux , C 2014 , ' Distilling structure in Taverna scientific workflows : A refactoring approach ' , BMC Bioinformatics , vol. 15 , S12 , pp. 1-14 . https://doi.org/10.1186/1471-2105-15-S1-S12","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/a8236567-b18e-426d-ae97-4b16359aab5f","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/a8236567-b18e-426d-ae97-4b16359aab5f","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cohen-Boulakia, S, Chen, J, Missier, P, Goble, C, Williams, A & Froidevaux, C 2014, 'Distilling structure in Taverna scientific workflows: a refactoring approach.', BMC Bioinformatics, vol. 15, pp. S12. https://doi.org/10.1186/1471-2105-15-S1-S12","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pure.atira.dk:publications/a8236567-b18e-426d-ae97-4b16359aab5f","is_oa":false,"landing_page_url":"https://www.research.manchester.ac.uk/portal/en/publications/distilling-structure-in-taverna-scientific-workflows-a-refactoring-approach(a8236567-b18e-426d-ae97-4b16359aab5f).html","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Cohen-Boulakia, S, Chen, J, Missier, P, Goble, C, Williams, A & Froidevaux, C 2014, 'Distilling structure in Taverna scientific workflows: a refactoring approach.', BMC Bioinformatics, vol. 15, pp. S12. https://doi.org/10.1186/1471-2105-15-S1-S12","raw_type":"info:eu-repo/semantics/publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-s1-s12","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s12","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S12","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5099999904632568,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G4349673913","display_name":null,"funder_award_id":"EP/G026238/","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G4660795319","display_name":null,"funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5596758552","display_name":"myGrid: A Platform for e-Biology Renewal","funder_award_id":"EP/G026238/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G6720185052","display_name":null,"funder_award_id":"EP/G026238","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1985036270.pdf","grobid_xml":"https://content.openalex.org/works/W1985036270.grobid-xml"},"referenced_works_count":28,"referenced_works":["https://openalex.org/W85648037","https://openalex.org/W172513418","https://openalex.org/W1608700717","https://openalex.org/W1980385789","https://openalex.org/W1983833794","https://openalex.org/W2016559298","https://openalex.org/W2019379313","https://openalex.org/W2024095319","https://openalex.org/W2028351695","https://openalex.org/W2029111229","https://openalex.org/W2029272102","https://openalex.org/W2029334814","https://openalex.org/W2044263435","https://openalex.org/W2059109315","https://openalex.org/W2061269152","https://openalex.org/W2104483974","https://openalex.org/W2109464129","https://openalex.org/W2116783139","https://openalex.org/W2136482257","https://openalex.org/W2137653635","https://openalex.org/W2138447175","https://openalex.org/W2139717579","https://openalex.org/W2143543488","https://openalex.org/W2145154883","https://openalex.org/W2151280810","https://openalex.org/W2171475421","https://openalex.org/W2913513779","https://openalex.org/W4297970464"],"related_works":["https://openalex.org/W4313549863","https://openalex.org/W2395465245","https://openalex.org/W2072205733","https://openalex.org/W2101762871","https://openalex.org/W3176957927","https://openalex.org/W4296534969","https://openalex.org/W4312761314","https://openalex.org/W2476494490","https://openalex.org/W3194667890","https://openalex.org/W4231266416"],"abstract_inverted_index":{"BACKGROUND:":[0],"Scientific":[1],"workflows":[2,65,153,198,297,304],"management":[3],"systems":[4],"are":[5],"increasingly":[6],"used":[7,105],"to":[8,18,24,109,118,177,181,235,248,317],"specify":[9,26],"and":[10,45,135,168,170,179,260,274,298,313,341],"manage":[11],"bioinformatics":[12,43],"experiments.":[13],"Their":[14],"programming":[15],"model":[16,33],"appeals":[17],"bioinformaticians,":[19],"who":[20],"can":[21],"use":[22,112],"them":[23,137],"easily":[25],"complex":[27],"data":[28],"processing":[29],"pipelines.":[30],"Such":[31],"a":[32,37,78,102,128,144,193,229,243,253,266,272,276,300],"is":[34,56,97,127],"underpinned":[35],"by":[36,252,321],"graph":[38,54],"structure,":[39],"where":[40],"nodes":[41],"represent":[42,47],"tasks":[44],"links":[46],"the":[48,81,89,93,98,111,147,183,187,197,204,219,236,294,306,336],"dataflow.":[49],"The":[50,121],"complexity":[51],"of":[52,88,100,113,124,163,173,196,206,231,245,285,303,323,338],"such":[53,133],"structures":[55,199],"increasing":[57],"over":[58],"time,":[59],"with":[60,77,138,203,257],"possible":[61],"impacts":[62],"on":[63,80,292,299],"scientific":[64],"reuse.":[66],"In":[67],"this":[68,125,155],"work,":[69],"we":[70,227,241,264,281,290],"propose":[71],"effective":[72],"methods":[73],"for":[74,92,130,344],"workflow":[75,209,220,238,273,319,326,339],"design,":[76,108],"focus":[79],"Taverna":[82,296],"model.":[83],"We":[84,190,222,310],"argue":[85],"that":[86,116,233,269,289],"one":[87],"contributing":[90],"factors":[91],"difficulties":[94],"in":[95,106,143,146,154,161,171,201,271],"reuse":[96],"presence":[99],"\"anti-patterns\",":[101],"term":[103],"broadly":[104],"program":[107],"indicate":[110],"idiomatic":[114],"forms":[115],"lead":[117],"over-complicated":[119],"design.":[120],"main":[122],"contribution":[123],"work":[126,329],"method":[129],"automatically":[131],"detecting":[132],"anti-patterns,":[134],"replacing":[136],"different":[139],"patterns":[140],"which":[141],"result":[142],"reduction":[145],"workflow's":[148],"overall":[149],"structural":[150,237],"complexity.":[151,239],"Rewriting":[152],"way":[156,322],"will":[157],"be":[158,214],"beneficial":[159],"both":[160,293],"terms":[162,172],"user":[164],"experience":[165],"(easier":[166,176],"design":[167,242,340],"maintenance),":[169],"operational":[174],"efficiency":[175],"manage,":[178],"sometimes":[180],"exploit":[182],"latent":[184],"parallelism":[185],"amongst":[186],"tasks).":[188],"RESULTS:":[189],"have":[191,311],"conducted":[192],"thorough":[194],"study":[195],"available":[200],"Taverna,":[202],"aim":[205],"finding":[207],"out":[208],"fragments":[210],"whose":[211],"structure":[212,320],"could":[213],"made":[215],"simpler":[216],"without":[217],"altering":[218],"semantics.":[221,327],"provide":[223,282],"four":[224],"contributions.":[225],"Firstly,":[226],"identify":[228],"set":[230],"anti-patterns":[232],"contribute":[234],"Secondly,":[240],"series":[244],"refactoring":[246,287,333],"transformations":[247],"replace":[249],"each":[250],"anti-pattern":[251],"new":[254],"semantically-equivalent":[255,278],"pattern":[256],"less":[258],"redundancy":[259],"simplified":[261],"structure.":[262],"Thirdly,":[263],"introduce":[265],"distilling":[267],"algorithm":[268],"takes":[270],"produces":[275],"distilled":[277,346],"workflow.":[279],"Lastly,":[280],"an":[283,315],"implementation":[284],"our":[286,332],"approach":[288,316,334],"evaluate":[291],"public":[295],"private":[301],"collection":[302],"from":[305],"BioVel":[307],"project.":[308],"CONCLUSION:":[309],"designed":[312],"implemented":[314],"improving":[318],"rewriting":[324],"preserving":[325],"Future":[328],"includes":[330],"considering":[331],"during":[335],"phase":[337],"proposing":[342],"guidelines":[343],"designing":[345],"workflows.":[347]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":5},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
