{"id":"https://openalex.org/W2129455748","doi":"https://doi.org/10.1186/1471-2105-15-s1-s11","title":"The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again","display_name":"The Risa R/Bioconductor package: integrative data analysis from experimental metadata and back again","publication_year":2014,"publication_date":"2014-01-01","ids":{"openalex":"https://openalex.org/W2129455748","doi":"https://doi.org/10.1186/1471-2105-15-s1-s11","mag":"2129455748","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564732"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-s1-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S11","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086246448","display_name":"Alejandra Gonz\u00e1lez-Beltr\u00e1n","orcid":"https://orcid.org/0000-0003-3499-8262"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Alejandra Gonz\u00e1lez-Beltr\u00e1n","raw_affiliation_strings":["Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","Oxford e-Research Centre, University of Oxford,Oxford,UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford,Oxford,UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038786156","display_name":"Steffen Neumann","orcid":"https://orcid.org/0000-0002-7899-7192"},"institutions":[{"id":"https://openalex.org/I315704651","display_name":"Leibniz Association","ror":"https://ror.org/01n6r0e97","country_code":"DE","type":"government","lineage":["https://openalex.org/I315704651"]},{"id":"https://openalex.org/I4210110463","display_name":"Leibniz Institute of Plant Biochemistry","ror":"https://ror.org/01mzk5576","country_code":"DE","type":"facility","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210110463"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Steffen Neumann","raw_affiliation_strings":["Leibniz Institute of Plant Biochemistry, Department of Stress and Developmental Biology, Halle, 06120, Germany","Leibniz Institute of Plant Biochemistry Department of Stress and Developmental Biology Halle Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Leibniz Institute of Plant Biochemistry, Department of Stress and Developmental Biology, Halle, 06120, Germany","institution_ids":["https://openalex.org/I4210110463"]},{"raw_affiliation_string":"Leibniz Institute of Plant Biochemistry Department of Stress and Developmental Biology Halle Germany","institution_ids":["https://openalex.org/I315704651"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5075052652","display_name":"Eamonn Maguire","orcid":"https://orcid.org/0000-0002-7277-7834"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Eamonn Maguire","raw_affiliation_strings":["Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","Oxford e-Research Centre, University of Oxford,Oxford,UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford,Oxford,UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008806860","display_name":"Susanna\u2010Assunta Sansone","orcid":"https://orcid.org/0000-0001-5306-5690"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Susanna-Assunta Sansone","raw_affiliation_strings":["Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","Oxford e-Research Centre, University of Oxford,Oxford,UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford,Oxford,UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5018395535","display_name":"Philippe Rocca\u2010Serra","orcid":"https://orcid.org/0000-0001-9853-5668"},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Philippe Rocca-Serra","raw_affiliation_strings":["Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","Oxford e-Research Centre, University of Oxford,Oxford,UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford, Oxford, OX1 3QG, UK","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Oxford e-Research Centre, University of Oxford,Oxford,UK","institution_ids":["https://openalex.org/I40120149"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086246448"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":10.8633,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.98030188,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"15","issue":"S1","first_page":"S11","last_page":"S11"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4772000014781952,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},"topics":[{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.4772000014781952,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.05389999970793724,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.04960000142455101,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.9456303119659424},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.8136086463928223},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7692466974258423},{"id":"https://openalex.org/keywords/parsing","display_name":"Parsing","score":0.5876801609992981},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5182650089263916},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.49825263023376465},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40860649943351746},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3882206678390503},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.273916631937027},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1405123770236969},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.1297052502632141}],"concepts":[{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.9456303119659424},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.8136086463928223},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7692466974258423},{"id":"https://openalex.org/C186644900","wikidata":"https://www.wikidata.org/wiki/Q194152","display_name":"Parsing","level":2,"score":0.5876801609992981},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5182650089263916},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.49825263023376465},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40860649943351746},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3882206678390503},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.273916631937027},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1405123770236969},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.1297052502632141},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013058","descriptor_name":"Mass Spectrometry","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020411","descriptor_name":"Oligonucleotide Array Sequence Analysis","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D055432","descriptor_name":"Metabolomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-15-s1-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564732","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564732","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3005796","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4015122","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-s1-s11","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-s1-s11","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-S1-S11","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.5099999904632568}],"awards":[{"id":"https://openalex.org/G203390434","display_name":"Omics Data Standards: synergy and implementations","funder_award_id":"BB/E025080/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3339699563","display_name":null,"funder_award_id":"BB/J020265/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G3379066889","display_name":"Establishing common standards and curation practices: towards real world biosharing.","funder_award_id":"BB/J020265/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G412979241","display_name":null,"funder_award_id":"BB/I000771/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G5456076942","display_name":"'Omics Data Sharing: the Investigation / Study / Assay (ISA) Infrastructure","funder_award_id":"BB/I000771/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G651559499","display_name":null,"funder_award_id":"BB/I025840/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6727031172","display_name":"Building a global metagenomics portal ('MGportal') to handle next-generation sequencing data and associated metadata","funder_award_id":"BB/I025840/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G6744379688","display_name":"Building a global metagenomics portal ('MGportal') to handle next generation sequencing data and associated metadata","funder_award_id":"BB/I02612X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G7775520706","display_name":null,"funder_award_id":"BB/E025080/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G8455383874","display_name":null,"funder_award_id":"BB/I02612X/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320309622","display_name":"Harvard University","ror":"https://ror.org/03vek6s52"},{"id":"https://openalex.org/F4320320290","display_name":"University of Oxford","ror":"https://ror.org/052gg0110"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2129455748.pdf","grobid_xml":"https://content.openalex.org/works/W2129455748.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W143096088","https://openalex.org/W1544923801","https://openalex.org/W1964010911","https://openalex.org/W1969165973","https://openalex.org/W2069928158","https://openalex.org/W2090167567","https://openalex.org/W2094953050","https://openalex.org/W2110017950","https://openalex.org/W2113153354","https://openalex.org/W2116634113","https://openalex.org/W2118258530","https://openalex.org/W2120358246","https://openalex.org/W2123152121","https://openalex.org/W2129687578","https://openalex.org/W2130430745","https://openalex.org/W2130542009","https://openalex.org/W2132239943","https://openalex.org/W2138598227","https://openalex.org/W2139252617","https://openalex.org/W2139846209","https://openalex.org/W2140665097","https://openalex.org/W2141297584","https://openalex.org/W2144303444","https://openalex.org/W2149378423","https://openalex.org/W2152239989","https://openalex.org/W2157918066","https://openalex.org/W2159702756","https://openalex.org/W2160697532","https://openalex.org/W2327661356","https://openalex.org/W4253880235"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W2011682793","https://openalex.org/W2109288169","https://openalex.org/W2157684052","https://openalex.org/W4223449272","https://openalex.org/W2978247079","https://openalex.org/W43224192","https://openalex.org/W90653389","https://openalex.org/W3046984657","https://openalex.org/W2053943328"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,110,138,223,271,294],"ISA-Tab":[2,145,197],"format":[3,48,70,95],"and":[4,25,46,58,71,78,120,126,191,218,232,258,266,281,292,307],"software":[5],"suite":[6],"have":[7],"been":[8],"developed":[9],"to":[10,26,38,74,91,196,243,321],"break":[11],"the":[12,69,83,93,102,114,117,127,131,160,183,188,245,298,302,316],"silo":[13],"effect":[14],"induced":[15],"by":[16,96,210],"technology-specific":[17],"formats":[18],"for":[19,54,179,214,263],"a":[20,35,43,88,252],"variety":[21],"of":[22,182,247,255,297],"data":[23,106,128,185,217],"types":[24],"better":[27],"support":[28,73,92],"experimental":[29,184,249,256],"metadata":[30,118,155,203],"tracking.":[31,268],"Experimentalists":[32],"seldom":[33],"use":[34,212],"single":[36],"technique":[37],"monitor":[39],"biological":[40],"signals.":[41],"Providing":[42],"multi-purpose,":[44],"pragmatic":[45],"accessible":[47],"that":[49],"abstracts":[50],"away":[51],"common":[52],"constructs":[53],"describing":[55],"Investigations,":[56],"Studies":[57],"Assays,":[59],"ISA":[60,94,161,189],"is":[61,226,274,300],"increasingly":[62],"popular.":[63],"To":[64],"attract":[65],"further":[66],"interest":[67],"towards":[68],"extend":[72],"ensure":[75],"reproducible":[76],"research":[77],"reusable":[79],"data,":[80,250],"we":[81,241],"present":[82],"Risa":[84,111,224,239,272],"package,":[85],"which":[86],"delivers":[87],"central":[89],"component":[90],"enabling":[97],"effortless":[98],"integration":[99],"with":[100,153,165,200,290],"R,":[101],"popular,":[103],"open":[104,227],"source":[105,228],"crunching":[107],"environment.":[108],"RESULTS:":[109],"package":[112,139,225,273],"bridges":[113],"gap":[115],"between":[116],"collection":[119],"curation":[121],"in":[122,159,177,187,285,305],"an":[123],"ISA-compliant":[124],"way":[125],"analysis":[129,201],"using":[130],"widely":[132],"used":[133],"statistical":[134],"computing":[135],"environment":[136],"R.":[137,205],"offers":[140],"functionality":[141],"for:":[142],"i)":[143],"parsing":[144],"datasets":[146],"into":[147],"R":[148,168,174],"objects,":[149],"ii)":[150],"augmenting":[151],"annotation":[152],"extra":[154],"not":[156],"explicitly":[157],"stated":[158],"syntax;":[162],"iii)":[163],"interfacing":[164],"domain":[166],"specific":[167,202],"packages":[169,175],"iv)":[170],"suggesting":[171],"potentially":[172],"useful":[173],"available":[176,234,275],"Bioconductor":[178,277,286,306],"subsequent":[180],"processing":[181,248],"described":[186],"format;":[190],"finally":[192],"v)":[193],"saving":[194],"back":[195],"files":[198],"augmented":[199],"from":[204,312],"We":[206],"demonstrate":[207],"these":[208],"features":[209],"presenting":[211],"cases":[213],"mass":[215],"spectrometry":[216],"DNA":[219],"microarray":[220],"data.":[221],"CONCLUSIONS:":[222],"(with":[229],"LGPL":[230],"license)":[231],"freely":[233],"through":[235],"Bioconductor.":[236],"By":[237],"making":[238],"available,":[240],"aim":[242],"facilitate":[244],"task":[246],"encouraging":[251],"uniform":[253],"representation":[254],"information":[257],"results":[259],"while":[260],"delivering":[261],"tools":[262],"ensuring":[264],"traceability":[265],"provenance":[267],"SOFTWARE":[269],"AVAILABILITY:":[270],"since":[276],"2.11":[278],"(version":[279],"1.0.0)":[280],"version":[282,296],"1.2.1":[283],"appeared":[284],"2.12,":[287],"both":[288],"along":[289],"documentation":[291],"examples.":[293],"latest":[295],"code":[299],"at":[301],"development":[303],"branch":[304],"can":[308],"also":[309],"be":[310],"accessed":[311],"GitHub":[313],"https://github.com/ISA-tools/Risa,":[314],"where":[315],"issue":[317],"tracker":[318],"allows":[319],"users":[320],"report":[322],"bugs":[323],"or":[324],"feature":[325],"requests.":[326]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
