{"id":"https://openalex.org/W2128822167","doi":"https://doi.org/10.1186/1471-2105-15-84","title":"openBEB: open biological experiment browser for correlative measurements","display_name":"openBEB: open biological experiment browser for correlative measurements","publication_year":2014,"publication_date":"2014-03-26","ids":{"openalex":"https://openalex.org/W2128822167","doi":"https://doi.org/10.1186/1471-2105-15-84","mag":"2128822167","pmid":"https://pubmed.ncbi.nlm.nih.gov/24666611"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-84","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-84","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-84","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-84","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016217625","display_name":"Chandrasekhar Ramakrishnan","orcid":"https://orcid.org/0000-0003-4180-9378"},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Chandrasekhar Ramakrishnan","raw_affiliation_strings":["Center for Information Sciences and Databases (C-ISD), Department of Biosystems Science and Engineering, Swiss Federal Institute of Technology Zurich, Basel, Switzerland","Swiss Institute of Bioinformatics, Biozentrum, Universit\u00e4t Basel, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Information Sciences and Databases (C-ISD), Department of Biosystems Science and Engineering, Swiss Federal Institute of Technology Zurich, Basel, Switzerland","institution_ids":[]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073135304","display_name":"Andrej Bieri","orcid":null},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Andrej Bieri","raw_affiliation_strings":["Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020839545","display_name":"Nora Sauter","orcid":"https://orcid.org/0000-0002-7387-8274"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Nora Sauter","raw_affiliation_strings":["Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086881063","display_name":"Sophie Roizard","orcid":null},"institutions":[{"id":"https://openalex.org/I5124864","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052","country_code":"CH","type":"education","lineage":["https://openalex.org/I2799323385","https://openalex.org/I5124864"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Sophie Roizard","raw_affiliation_strings":["Laboratory of Physical Chemistry of Polymers and Membranes (LCPPM), \u00c9cole Polytechnique Federale de Lausanne, Lausanne, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Physical Chemistry of Polymers and Membranes (LCPPM), \u00c9cole Polytechnique Federale de Lausanne, Lausanne, Switzerland","institution_ids":["https://openalex.org/I5124864"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090081130","display_name":"Philippe Ringler","orcid":"https://orcid.org/0000-0003-4346-5089"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Philippe Ringler","raw_affiliation_strings":["Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103568230","display_name":"Shirley A. M\u00fcller","orcid":null},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Shirley A M\u00fcller","raw_affiliation_strings":["Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022340997","display_name":"Kenneth N. Goldie","orcid":"https://orcid.org/0000-0002-7405-0049"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Kenneth N Goldie","raw_affiliation_strings":["Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062171553","display_name":"Kaloyan Enimanev","orcid":null},"institutions":[],"countries":[],"is_corresponding":true,"raw_author_name":"Kaloyan Enimanev","raw_affiliation_strings":["Center for Information Sciences and Databases (C-ISD), Department of Biosystems Science and Engineering, Swiss Federal Institute of Technology Zurich, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Information Sciences and Databases (C-ISD), Department of Biosystems Science and Engineering, Swiss Federal Institute of Technology Zurich, Basel, Switzerland","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022570818","display_name":"Henning Stahlberg","orcid":"https://orcid.org/0000-0002-1185-4592"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Henning Stahlberg","raw_affiliation_strings":["Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;","institution_ids":["https://openalex.org/I1850255"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081462024","display_name":"Bernd Rinn","orcid":null},"institutions":[{"id":"https://openalex.org/I12708293","display_name":"SIB Swiss Institute of Bioinformatics","ror":"https://ror.org/002n09z45","country_code":"CH","type":"nonprofit","lineage":["https://openalex.org/I12708293"]},{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Bernd Rinn","raw_affiliation_strings":["Center for Information Sciences and Databases (C-ISD), Department of Biosystems Science and Engineering, Swiss Federal Institute of Technology Zurich, Basel, Switzerland","Swiss Institute of Bioinformatics, Biozentrum, Universit\u00e4t Basel, Basel, Switzerland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Information Sciences and Databases (C-ISD), Department of Biosystems Science and Engineering, Swiss Federal Institute of Technology Zurich, Basel, Switzerland","institution_ids":[]},{"raw_affiliation_string":"Swiss Institute of Bioinformatics, Biozentrum, Universit\u00e4t Basel, Basel, Switzerland","institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5084172910","display_name":"Thomas Braun","orcid":"https://orcid.org/0000-0002-9148-0200"},"institutions":[{"id":"https://openalex.org/I1850255","display_name":"University of Basel","ror":"https://ror.org/02s6k3f65","country_code":"CH","type":"education","lineage":["https://openalex.org/I1850255"]}],"countries":["CH"],"is_corresponding":true,"raw_author_name":"Thomas Braun","raw_affiliation_strings":["Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland. Thomas.Braun@unibas.ch","\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Center for Cellular Imaging and NanoAnalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland. Thomas.Braun@unibas.ch","institution_ids":["https://openalex.org/I1850255"]},{"raw_affiliation_string":"\u2020Center for Cellular Imaging and Nanoanalytics (C-CINA), Biozentrum, Universit\u00e4t Basel, Basel, Switzerland;","institution_ids":["https://openalex.org/I1850255"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5016217625","https://openalex.org/A5020839545","https://openalex.org/A5022340997","https://openalex.org/A5022570818","https://openalex.org/A5062171553","https://openalex.org/A5073135304","https://openalex.org/A5081462024","https://openalex.org/A5084172910","https://openalex.org/A5086881063","https://openalex.org/A5090081130","https://openalex.org/A5103568230"],"corresponding_institution_ids":["https://openalex.org/I12708293","https://openalex.org/I1850255","https://openalex.org/I5124864"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":1.7665,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.87163677,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"15","issue":"1","first_page":"84","last_page":"84"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.9922999739646912,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T11289","display_name":"Single-cell and spatial transcriptomics","score":0.9909999966621399,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7916430234909058},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6785004734992981},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5576303005218506},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5394604206085205},{"id":"https://openalex.org/keywords/container","display_name":"Container (type theory)","score":0.503093421459198},{"id":"https://openalex.org/keywords/plug-in","display_name":"Plug-in","score":0.4792461395263672},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.4766415059566498},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.44780245423316956},{"id":"https://openalex.org/keywords/data-management","display_name":"Data management","score":0.4475286900997162},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.43153226375579834},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.43144476413726807},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.37521761655807495},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.27547889947891235},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.20362043380737305},{"id":"https://openalex.org/keywords/operating-system","display_name":"Operating system","score":0.1374763548374176},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.12118077278137207}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7916430234909058},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6785004734992981},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5576303005218506},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5394604206085205},{"id":"https://openalex.org/C2781018962","wikidata":"https://www.wikidata.org/wiki/Q5164884","display_name":"Container (type theory)","level":2,"score":0.503093421459198},{"id":"https://openalex.org/C4924752","wikidata":"https://www.wikidata.org/wiki/Q184148","display_name":"Plug-in","level":2,"score":0.4792461395263672},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.4766415059566498},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.44780245423316956},{"id":"https://openalex.org/C1668388","wikidata":"https://www.wikidata.org/wiki/Q1149776","display_name":"Data management","level":2,"score":0.4475286900997162},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.43153226375579834},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.43144476413726807},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.37521761655807495},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.27547889947891235},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.20362043380737305},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.1374763548374176},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.12118077278137207},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C78519656","wikidata":"https://www.wikidata.org/wiki/Q101333","display_name":"Mechanical engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012985","descriptor_name":"Software Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057205","descriptor_name":"Automation, Laboratory","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-15-84","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-84","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-84","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24666611","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24666611","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:edoc.unibas.ch:33381","is_oa":false,"landing_page_url":"https://edoc.unibas.ch/33381/1/1471-2105-15-84.pdf","pdf_url":"https://edoc.unibas.ch/33381/1/1471-2105-15-84.pdf","source":{"id":"https://openalex.org/S4306401836","display_name":"edoc (University of Basel)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1850255","host_organization_name":"University of Basel","host_organization_lineage":["https://openalex.org/I1850255"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:www.zora.uzh.ch:97278","is_oa":true,"landing_page_url":"https://www.zora.uzh.ch/id/eprint/97278/1/701F00DB-8585-4C63-ADE5-A6E56D25567A.pdf","pdf_url":"https://www.zora.uzh.ch/id/eprint/97278/1/701F00DB-8585-4C63-ADE5-A6E56D25567A.pdf","source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"Ramakrishnan, Chandrasekhar; Bieri, Andrej; Sauter, Nora; Roizard, Sophie; Ringler, Philippe; M\u00fcller, Shirley A; Goldie, Kenneth N; Enimanev, Kaloyan; Stahlberg, Henning; Rinn, Bernd; Braun, Thomas (2014). openBEB: open biological experiment browser for correlative measurements. BMC Bioinformatics, 15:84.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2967145","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3987129","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3987129","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3987129","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:infoscience.epfl.ch:199058","is_oa":true,"landing_page_url":"http://infoscience.epfl.ch/record/199058","pdf_url":null,"source":{"id":"https://openalex.org/S4306400487","display_name":"Infoscience (Ecole Polytechnique F\u00e9d\u00e9rale de Lausanne)","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5124864","host_organization_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","host_organization_lineage":["https://openalex.org/I5124864"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"doi:10.5167/uzh-97278","is_oa":true,"landing_page_url":"https://doi.org/10.5167/uzh-97278","pdf_url":null,"source":{"id":"https://openalex.org/S4306401281","display_name":"Zurich Open Repository and Archive (University of Zurich)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I202697423","host_organization_name":"University of Zurich","host_organization_lineage":["https://openalex.org/I202697423"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"JournalArticle"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-84","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-84","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-84","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[{"id":"https://openalex.org/G3424982379","display_name":"Real-time sensors for label-free and func-tionalization-free characterization of molecular interactions","funder_award_id":"146619","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"},{"id":"https://openalex.org/G628552264","display_name":null,"funder_award_id":"200020","funder_id":"https://openalex.org/F4320320924","funder_display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung"}],"funders":[{"id":"https://openalex.org/F4320320915","display_name":"\u00c9cole Polytechnique F\u00e9d\u00e9rale de Lausanne","ror":"https://ror.org/02s376052"},{"id":"https://openalex.org/F4320320924","display_name":"Schweizerischer Nationalfonds zur F\u00f6rderung der Wissenschaftlichen Forschung","ror":"https://ror.org/00yjd3n13"},{"id":"https://openalex.org/F4320327577","display_name":"SystemsX.ch","ror":"https://ror.org/02s09gf16"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2128822167.pdf","grobid_xml":"https://content.openalex.org/works/W2128822167.grobid-xml"},"referenced_works_count":10,"referenced_works":["https://openalex.org/W1517498636","https://openalex.org/W1969782660","https://openalex.org/W1974694769","https://openalex.org/W1993009001","https://openalex.org/W2031334371","https://openalex.org/W2046854548","https://openalex.org/W2076449818","https://openalex.org/W2122344857","https://openalex.org/W2145498914","https://openalex.org/W2521524350"],"related_works":["https://openalex.org/W4287378204","https://openalex.org/W2981957539","https://openalex.org/W47352601","https://openalex.org/W2545422590","https://openalex.org/W4240705470","https://openalex.org/W2945311252","https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2095118173","https://openalex.org/W3104375528"],"abstract_inverted_index":{"BACKGROUND:":[0],"New":[1],"experimental":[2],"methods":[3,224],"must":[4,49],"be":[5,25,50],"developed":[6,65],"to":[7,270],"study":[8],"interaction":[9],"networks":[10],"in":[11,56,173,191],"systems":[12],"biology.":[13],"To":[14],"reduce":[15],"biological":[16,233],"noise,":[17],"individual":[18],"subjects,":[19],"such":[20,84],"as":[21,85],"single":[22],"cells,":[23],"should":[24],"analyzed":[26],"using":[27],"high":[28],"throughput":[29],"approaches.":[30],"The":[31,129,180,241],"measurement":[32],"of":[33,47,89,105,111,132,138,153,193,212,243,249,260,268],"several":[34],"correlative":[35],"physical":[36],"properties":[37],"would":[38],"further":[39],"improve":[40],"data":[41,48,75,119,142],"consistency.":[42],"Accordingly,":[43],"a":[44,57,71,97,108,176,204],"considerable":[45],"quantity":[46],"acquired,":[51],"correlated,":[52],"catalogued":[53],"and":[54,79,96,113,115,118,151,159,168,185,188,220,225,237,277,290],"stored":[55],"database":[58,82],"for":[59,74,141,203,228],"subsequent":[60],"analysis.":[61],"RESULTS:":[62],"We":[63,264],"have":[64],"openBEB":[66,106,133,198,244,269],"(open":[67],"Biological":[68],"Experiment":[69],"Browser),":[70],"software":[72,201],"framework":[73],"acquisition,":[76],"coordination,":[77],"annotation":[78,117],"synchronization":[80],"with":[81,175],"solutions":[83],"openBIS.":[86],"OpenBEB":[87,208],"consists":[88],"two":[90],"main":[91],"parts:":[92],"A":[93,146],"core":[94,104,164,262],"program":[95],"plug-in":[98],"manager.":[99],"Whereas":[100],"the":[101,135,149,154,163,166,169,182,189,246,256,261,266],"data-type":[102],"independent":[103],"maintains":[107],"local":[109],"container":[110],"raw-data":[112],"metadata":[114,170],"provides":[116],"management":[120],"tools,":[121],"all":[122],"data-specific":[123],"tasks":[124],"are":[125,288],"performed":[126],"by":[127,197],"plug-ins.":[128],"open":[130],"architecture":[131],"enables":[134,245],"fast":[136],"integration":[137,195],"plug-ins,":[139,250],"e.g.,":[140,227],"acquisition":[143],"or":[144],"visualization.":[145],"macro-interpreter":[147],"allows":[148],"automation":[150],"coordination":[152],"different":[155],"modules.":[156],"An":[157],"update":[158,186],"deployment":[160,184],"mechanism":[161],"keeps":[162],"program,":[165],"plug-ins":[167],"definition":[171],"files":[172],"sync":[174],"central":[177],"repository.":[178],"CONCLUSIONS:":[179],"versatility,":[181],"simple":[183],"mechanism,":[187],"scalability":[190],"terms":[192],"module":[194],"offered":[196],"make":[199],"this":[200,281],"interesting":[202],"large":[205],"scientific":[206],"community.":[207],"targets":[209],"three":[210],"types":[211],"researcher,":[213],"ideally":[214],"working":[215],"closely":[216],"together:":[217],"(i)":[218],"Engineers":[219],"scientists":[221,231],"developing":[222],"new":[223],"instruments,":[226],"systems-biology,":[229],"(ii)":[230],"performing":[232],"experiments,":[234],"(iii)":[235],"theoreticians":[236],"mathematicians":[238],"analyzing":[239],"data.":[240],"design":[242],"rapid":[247],"development":[248],"which":[251],"will":[252],"inherently":[253],"benefit":[254],"from":[255,284],"\"house":[257],"keeping\"":[258],"abilities":[259],"program.":[263],"report":[265],"use":[267],"combine":[271],"live":[272],"cell":[273],"microscopy,":[274],"microfluidic":[275],"control":[276],"visual":[278],"proteomics.":[279],"In":[280],"example,":[282],"measurements":[283],"diverse":[285],"complementary":[286],"techniques":[287],"combined":[289],"correlated.":[291]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2016-06-24T00:00:00"}
