{"id":"https://openalex.org/W2106670570","doi":"https://doi.org/10.1186/1471-2105-15-44","title":"The HTS barcode checkerpipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data","display_name":"The HTS barcode checkerpipeline, a tool for automated detection of illegally traded species from high-throughput sequencing data","publication_year":2014,"publication_date":"2014-02-06","ids":{"openalex":"https://openalex.org/W2106670570","doi":"https://doi.org/10.1186/1471-2105-15-44","mag":"2106670570","pmid":"https://pubmed.ncbi.nlm.nih.gov/24502833"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-44","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-44","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-44","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-44","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5066278788","display_name":"Youri Lammers","orcid":"https://orcid.org/0000-0003-0952-2668"},"institutions":[{"id":"https://openalex.org/I1295562517","display_name":"Naturalis Biodiversity Center","ror":"https://ror.org/0566bfb96","country_code":"NL","type":"archive","lineage":["https://openalex.org/I1295562517"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Youri Lammers","raw_affiliation_strings":["Naturalis Biodiversity Center, Darwinweg 4, 2333, CR, Leiden, The Netherlands","Naturalis Biodiversity Center; Leiden The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Naturalis Biodiversity Center, Darwinweg 4, 2333, CR, Leiden, The Netherlands","institution_ids":["https://openalex.org/I1295562517"]},{"raw_affiliation_string":"Naturalis Biodiversity Center; Leiden The Netherlands","institution_ids":["https://openalex.org/I1295562517"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006032212","display_name":"Tamara Peelen","orcid":null},"institutions":[{"id":"https://openalex.org/I4210109825","display_name":"Belastingdienst","ror":"https://ror.org/01qh5w602","country_code":"NL","type":"government","lineage":["https://openalex.org/I1314811817","https://openalex.org/I4210109825","https://openalex.org/I4210140876"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Tamara Peelen","raw_affiliation_strings":["Dutch Customs Laboratory, Kingsfordweg 1, 1043, GN, Amsterdam, The Netherlands","Dutch Customs Laboratory, Amsterdam, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dutch Customs Laboratory, Kingsfordweg 1, 1043, GN, Amsterdam, The Netherlands","institution_ids":[]},{"raw_affiliation_string":"Dutch Customs Laboratory, Amsterdam, The Netherlands","institution_ids":["https://openalex.org/I4210109825"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053461897","display_name":"Rutger Vos","orcid":"https://orcid.org/0000-0001-9254-7318"},"institutions":[{"id":"https://openalex.org/I1295562517","display_name":"Naturalis Biodiversity Center","ror":"https://ror.org/0566bfb96","country_code":"NL","type":"archive","lineage":["https://openalex.org/I1295562517"]}],"countries":["NL"],"is_corresponding":false,"raw_author_name":"Rutger A Vos","raw_affiliation_strings":["Naturalis Biodiversity Center, Darwinweg 4, 2333, CR, Leiden, The Netherlands","Naturalis Biodiversity Center; Leiden The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Naturalis Biodiversity Center, Darwinweg 4, 2333, CR, Leiden, The Netherlands","institution_ids":["https://openalex.org/I1295562517"]},{"raw_affiliation_string":"Naturalis Biodiversity Center; Leiden The Netherlands","institution_ids":["https://openalex.org/I1295562517"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010935061","display_name":"Barbara Gravendeel","orcid":"https://orcid.org/0000-0002-6508-0895"},"institutions":[{"id":"https://openalex.org/I121797337","display_name":"Leiden University","ror":"https://ror.org/027bh9e22","country_code":"NL","type":"education","lineage":["https://openalex.org/I121797337"]},{"id":"https://openalex.org/I1295562517","display_name":"Naturalis Biodiversity Center","ror":"https://ror.org/0566bfb96","country_code":"NL","type":"archive","lineage":["https://openalex.org/I1295562517"]},{"id":"https://openalex.org/I210716285","display_name":"University of Applied Sciences Leiden","ror":"https://ror.org/0093src13","country_code":"NL","type":"education","lineage":["https://openalex.org/I210716285"]}],"countries":["NL"],"is_corresponding":true,"raw_author_name":"Barbara Gravendeel","raw_affiliation_strings":["Naturalis Biodiversity Center, Darwinweg 4, 2333 CR Leiden, The Netherlands. Barbara.Gravendeel@naturalis.nl","University of Applied Sciences Leiden, Leiden, The Netherlands","Leiden University, Faculty of Science, Leiden, The Netherlands","Naturalis Biodiversity Center, Leiden, The Netherlands"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Naturalis Biodiversity Center, Darwinweg 4, 2333 CR Leiden, The Netherlands. Barbara.Gravendeel@naturalis.nl","institution_ids":["https://openalex.org/I1295562517"]},{"raw_affiliation_string":"University of Applied Sciences Leiden, Leiden, The Netherlands","institution_ids":["https://openalex.org/I210716285"]},{"raw_affiliation_string":"Leiden University, Faculty of Science, Leiden, The Netherlands","institution_ids":["https://openalex.org/I121797337"]},{"raw_affiliation_string":"Naturalis Biodiversity Center, Leiden, The Netherlands","institution_ids":["https://openalex.org/I1295562517"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5010935061"],"corresponding_institution_ids":["https://openalex.org/I121797337","https://openalex.org/I1295562517","https://openalex.org/I210716285"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":3.3974,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.91673107,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"44","last_page":"44"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.3732999861240387,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12640","display_name":"Environmental DNA in Biodiversity Studies","score":0.3732999861240387,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10895","display_name":"Species Distribution and Climate Change","score":0.2750999927520752,"subfield":{"id":"https://openalex.org/subfields/2302","display_name":"Ecological Modeling"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T12388","display_name":"Identification and Quantification in Food","score":0.1111999973654747,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/barcode","display_name":"Barcode","score":0.884514331817627},{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.6516432762145996},{"id":"https://openalex.org/keywords/cites","display_name":"CITES","score":0.626585066318512},{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.5598966479301453},{"id":"https://openalex.org/keywords/false-positive-paradox","display_name":"False positive paradox","score":0.5384680032730103},{"id":"https://openalex.org/keywords/dna-barcoding","display_name":"DNA barcoding","score":0.52790766954422},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.47860902547836304},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4359118342399597},{"id":"https://openalex.org/keywords/fishery","display_name":"Fishery","score":0.15125098824501038},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.1488068401813507},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.13206356763839722},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.13186907768249512}],"concepts":[{"id":"https://openalex.org/C2776841711","wikidata":"https://www.wikidata.org/wiki/Q856","display_name":"Barcode","level":2,"score":0.884514331817627},{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.6516432762145996},{"id":"https://openalex.org/C95803793","wikidata":"https://www.wikidata.org/wiki/Q191836","display_name":"CITES","level":2,"score":0.626585066318512},{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.5598966479301453},{"id":"https://openalex.org/C64869954","wikidata":"https://www.wikidata.org/wiki/Q1859747","display_name":"False positive paradox","level":2,"score":0.5384680032730103},{"id":"https://openalex.org/C141732470","wikidata":"https://www.wikidata.org/wiki/Q1154642","display_name":"DNA barcoding","level":2,"score":0.52790766954422},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.47860902547836304},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4359118342399597},{"id":"https://openalex.org/C505870484","wikidata":"https://www.wikidata.org/wiki/Q180538","display_name":"Fishery","level":1,"score":0.15125098824501038},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.1488068401813507},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.13206356763839722},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.13186907768249512},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D004365","descriptor_name":"Drugs, Chinese Herbal","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008516","descriptor_name":"Medicine, Chinese Traditional","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D038622","descriptor_name":"Internationality","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056727","descriptor_name":"Endangered Species","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D056727","descriptor_name":"Endangered Species","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D056727","descriptor_name":"Endangered Species","qualifier_ui":"Q000331","qualifier_name":"legislation & jurisprudence","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-15-44","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-44","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-44","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24502833","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24502833","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2905976","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3922334","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-44","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-44","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-44","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4300000071525574,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2106670570.pdf","grobid_xml":"https://content.openalex.org/works/W2106670570.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W150570126","https://openalex.org/W570265017","https://openalex.org/W1502434891","https://openalex.org/W1507593999","https://openalex.org/W1552996091","https://openalex.org/W1981839438","https://openalex.org/W1984999127","https://openalex.org/W2055043387","https://openalex.org/W2061680337","https://openalex.org/W2071510336","https://openalex.org/W2072022921","https://openalex.org/W2073252818","https://openalex.org/W2099901798","https://openalex.org/W2103961200","https://openalex.org/W2107347656","https://openalex.org/W2114850508","https://openalex.org/W2125418992","https://openalex.org/W2136482257","https://openalex.org/W2142678478","https://openalex.org/W2145252923","https://openalex.org/W2153298414","https://openalex.org/W2156125289","https://openalex.org/W2161645441","https://openalex.org/W2170596217","https://openalex.org/W2726651211","https://openalex.org/W2961549061","https://openalex.org/W4212865600","https://openalex.org/W4299357110","https://openalex.org/W4319587689","https://openalex.org/W6812412690"],"related_works":["https://openalex.org/W4205559809","https://openalex.org/W3090505631","https://openalex.org/W2952025703","https://openalex.org/W2402613932","https://openalex.org/W2111456242","https://openalex.org/W4291786356","https://openalex.org/W2360712899","https://openalex.org/W2097619744","https://openalex.org/W2509660947","https://openalex.org/W2394007119"],"abstract_inverted_index":{"BACKGROUND:":[0],"Mixtures":[1],"of":[2,10,22,34,50,57,70,75,117,127,142,144,207,239,260],"internationally":[3],"traded":[4],"organic":[5],"substances":[6],"can":[7,41,122,232,266],"contain":[8,153],"parts":[9],"species":[11,68,158,241,271],"protected":[12],"by":[13],"the":[14,32,48,78,115,161,178,202,214,275],"Convention":[15],"on":[16,160,201],"International":[17],"Trade":[18],"in":[19,47,124,248,262,268,274],"Endangered":[20],"Species":[21],"Wild":[23],"Fauna":[24],"and":[25,37,105,119,169,183,210,222,234,256,265],"Flora":[26],"(CITES).":[27],"These":[28],"mixtures":[29],"often":[30],"raise":[31],"suspicion":[33],"border":[35],"control":[36],"customs":[38],"offices,":[39],"which":[40],"lead":[42],"to":[43,101,109,149],"confiscation,":[44],"for":[45,139,174,184],"example":[46],"case":[49],"Traditional":[51],"Chinese":[52],"medicines":[53],"(TCMs).":[54],"High-throughput":[55],"sequencing":[56],"DNA":[58,85,154,237],"barcoding":[59],"markers":[60],"obtained":[61,156,244],"from":[62,157,242,245,272],"such":[63],"samples":[64,247],"provides":[65],"insight":[66],"into":[67,195],"constituents":[69],"mixtures,":[71],"but":[72],"manual":[73],"cross-referencing":[74],"results":[76,95],"against":[77,87,177],"CITES":[79,118,162,203],"appendices":[80],"is":[81,136,282],"labor":[82],"intensive.":[83],"Matching":[84],"barcodes":[86,155,238],"NCBI":[88,120,179],"GenBank":[89,121,180],"using":[90],"BLAST":[91,175],"may":[92],"yield":[93],"misleading":[94],"both":[96],"as":[97],"false":[98,106,220],"positives,":[99],"due":[100,108],"incorrectly":[102],"annotated":[103],"sequences,":[104],"negatives,":[107],"spurious":[110],"taxonomic":[111,185,196,224],"re-assignment.":[112],"Incongruence":[113],"between":[114],"taxonomies":[116],"result":[123],"erroneous":[125],"estimates":[126],"illegal":[128],"trade.":[129],"RESULTS:":[130],"The":[131,227,253,277],"HTS":[132,215,228,278],"barcode":[133,147,216,229,279],"checker":[134,217,230,280],"pipeline":[135,166,218,231,254,281],"an":[137],"application":[138],"automated":[140],"processing":[141],"sets":[143],"'next":[145],"generation'":[146],"sequences":[148],"determine":[150],"whether":[151],"these":[152,270],"listed":[159],"appendices.":[163,204],"This":[164],"analytical":[165],"builds":[167],"upon":[168],"extends":[170],"existing":[171],"open-source":[172],"applications":[173],"matching":[176],"reference":[181],"database":[182],"name":[186],"reconciliation.":[187],"In":[188],"a":[189,208,250],"single":[190],"operation,":[191],"reads":[192,243],"are":[193],"converted":[194],"identifications":[197],"matched":[198],"with":[199],"names":[200,212],"By":[205],"inclusion":[206],"blacklist":[209],"additional":[211],"databases,":[213],"prevents":[219],"positives":[221],"resolves":[223],"heterogeneity.":[225],"CONCLUSIONS:":[226],"detect":[233],"correctly":[235],"identify":[236],"CITES-protected":[240],"TCM":[246],"just":[249],"few":[251],"minutes.":[252],"facilitates":[255],"improves":[257],"molecular":[258],"monitoring":[259],"trade":[261],"endangered":[263],"species,":[264],"aid":[267],"safeguarding":[269],"extinction":[273],"wild.":[276],"available":[283],"at":[284],"https://github.com/naturalis/HTS-barcode-checker.":[285]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-27T08:26:11.824852","created_date":"2025-10-10T00:00:00"}
