{"id":"https://openalex.org/W1483397327","doi":"https://doi.org/10.1186/1471-2105-15-309","title":"Predicting virus mutations through relational learning","display_name":"Predicting virus mutations through relational learning","publication_year":2012,"publication_date":"2012-09-09","ids":{"openalex":"https://openalex.org/W1483397327","doi":"https://doi.org/10.1186/1471-2105-15-309","mag":"1483397327"},"language":"en","primary_location":{"id":"pmh:oai:CiteSeerX.psu:10.1.1.416.3153","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.416.3153","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ceur-ws.org/Vol-916/Paper6.pdf","raw_type":"text"},"type":"article","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/186675","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072420259","display_name":"Elisa Cilia","orcid":null},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Elisa Cilia","raw_affiliation_strings":["Universit\u00e9 libre de Bruxelles"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e9 libre de Bruxelles","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001174680","display_name":"Stefano Teso","orcid":"https://orcid.org/0000-0002-2340-9461"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Stefano Teso","raw_affiliation_strings":["University of Trento"],"raw_orcid":"https://orcid.org/0000-0002-2340-9461","affiliations":[{"raw_affiliation_string":"University of Trento","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067170104","display_name":"Sergio Ammendola","orcid":"https://orcid.org/0000-0001-9452-2456"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Sergio Ammendola","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0001-9452-2456","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003581663","display_name":"Tom Lenaerts","orcid":"https://orcid.org/0000-0003-3645-1455"},"institutions":[{"id":"https://openalex.org/I132053463","display_name":"Universit\u00e9 Libre de Bruxelles","ror":"https://ror.org/01r9htc13","country_code":"BE","type":"education","lineage":["https://openalex.org/I132053463"]}],"countries":["BE"],"is_corresponding":false,"raw_author_name":"Tom Lenaerts","raw_affiliation_strings":["Universit\u00e9 libre de Bruxelles"],"raw_orcid":"https://orcid.org/0000-0003-3645-1455","affiliations":[{"raw_affiliation_string":"Universit\u00e9 libre de Bruxelles","institution_ids":["https://openalex.org/I132053463"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066187890","display_name":"Andrea Passerini","orcid":"https://orcid.org/0000-0002-2765-5395"},"institutions":[{"id":"https://openalex.org/I193223587","display_name":"University of Trento","ror":"https://ror.org/05trd4x28","country_code":"IT","type":"education","lineage":["https://openalex.org/I193223587"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Andrea Passerini","raw_affiliation_strings":["University of Trento"],"raw_orcid":"https://orcid.org/0000-0002-2765-5395","affiliations":[{"raw_affiliation_string":"University of Trento","institution_ids":["https://openalex.org/I193223587"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080598287","display_name":"Christopher J. O. Baker","orcid":"https://orcid.org/0000-0003-4004-6479"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Christopher J. O. Baker","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-4004-6479","affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5006224704","display_name":"Dietrich Rebholz\u2010Schuhmann","orcid":"https://orcid.org/0000-0002-1018-0370"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Dietrich Rebholz\u2010Schuhmann","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-1018-0370","affiliations":[]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.3141,"has_fulltext":true,"cited_by_count":2,"citation_normalized_percentile":{"value":0.55051158,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T10526","display_name":"HIV/AIDS drug development and treatment","score":0.9997000098228455,"subfield":{"id":"https://openalex.org/subfields/2725","display_name":"Infectious Diseases"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10112","display_name":"HIV Research and Treatment","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/2406","display_name":"Virology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10151","display_name":"Hepatitis C virus research","score":0.9904000163078308,"subfield":{"id":"https://openalex.org/subfields/2721","display_name":"Hepatology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/mutant","display_name":"Mutant","score":0.7067523002624512},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.7040363550186157},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5171225070953369},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.47838106751441956},{"id":"https://openalex.org/keywords/drug-resistance","display_name":"Drug resistance","score":0.4560333490371704},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4394264221191406},{"id":"https://openalex.org/keywords/reverse-transcriptase","display_name":"Reverse transcriptase","score":0.4220763146877289},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.40034133195877075},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.39718741178512573},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.29686522483825684},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.1363586187362671}],"concepts":[{"id":"https://openalex.org/C143065580","wikidata":"https://www.wikidata.org/wiki/Q3285695","display_name":"Mutant","level":3,"score":0.7067523002624512},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.7040363550186157},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5171225070953369},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.47838106751441956},{"id":"https://openalex.org/C114851261","wikidata":"https://www.wikidata.org/wiki/Q12147416","display_name":"Drug resistance","level":2,"score":0.4560333490371704},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4394264221191406},{"id":"https://openalex.org/C156719811","wikidata":"https://www.wikidata.org/wiki/Q28774","display_name":"Reverse transcriptase","level":4,"score":0.4220763146877289},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.40034133195877075},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.39718741178512573},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.29686522483825684},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.1363586187362671},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[],"locations_count":4,"locations":[{"id":"pmh:oai:CiteSeerX.psu:10.1.1.416.3153","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.416.3153","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://ceur-ws.org/Vol-916/Paper6.pdf","raw_type":"text"},{"id":"pmh:oai:dipot.ulb.ac.be:2013/186675","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/186675","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In: Baker, Christopher J.O.& Rebholz-Schuhmann, Dietrich (Eds.), CEUR Workshop Proceedings [ 1613-0073 ]. CEUR","raw_type":"info:eu-repo/semantics/conferencePaper"},{"id":"pmh:oai:iris.unitn.it:11572/95479","is_oa":false,"landing_page_url":"http://hdl.handle.net/11572/95479","pdf_url":null,"source":{"id":"https://openalex.org/S4306401913","display_name":"Institutional Research Information System (Universit\u00e0 degli Studi di Trento)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I193223587","host_organization_name":"University of Trento","host_organization_lineage":["https://openalex.org/I193223587"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/conferenceObject"},{"id":"mag:1483397327","is_oa":false,"landing_page_url":"http://ceur-ws.org/Vol-916/Paper6.pdf","pdf_url":null,"source":null,"license":null,"license_id":null,"version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":null}],"best_oa_location":{"id":"pmh:oai:dipot.ulb.ac.be:2013/186675","is_oa":true,"landing_page_url":"http://hdl.handle.net/2013/ULB-DIPOT:oai:dipot.ulb.ac.be:2013/186675","pdf_url":null,"source":{"id":"https://openalex.org/S4306401063","display_name":"D\u00e9p\u00f4t institutionnel de l'Universit\u00e9 libre de Bruxelles (Universit\u00e9 Libre de Bruxelles)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I132053463","host_organization_name":"Universit\u00e9 Libre de Bruxelles","host_organization_lineage":["https://openalex.org/I132053463"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"In: Baker, Christopher J.O.& Rebholz-Schuhmann, Dietrich (Eds.), CEUR Workshop Proceedings [ 1613-0073 ]. CEUR","raw_type":"info:eu-repo/semantics/conferencePaper"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7599999904632568}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":false},"content_urls":null,"referenced_works_count":18,"referenced_works":["https://openalex.org/W1546341583","https://openalex.org/W1687441943","https://openalex.org/W1932931426","https://openalex.org/W1976580962","https://openalex.org/W1980214158","https://openalex.org/W1987902506","https://openalex.org/W1995155878","https://openalex.org/W2005120335","https://openalex.org/W2043886357","https://openalex.org/W2081349095","https://openalex.org/W2084702672","https://openalex.org/W2109046728","https://openalex.org/W2115367108","https://openalex.org/W2128685318","https://openalex.org/W2132769220","https://openalex.org/W2134488721","https://openalex.org/W2135124797","https://openalex.org/W2169790816"],"related_works":["https://openalex.org/W158131395","https://openalex.org/W2889812755","https://openalex.org/W2950690600","https://openalex.org/W53536954","https://openalex.org/W1587089803","https://openalex.org/W45486058","https://openalex.org/W2809360952"],"abstract_inverted_index":{"Background:":[0],"Viruses":[1],"are":[2],"typically":[3],"characterized":[4,137],"by":[5,138],"high":[6],"mutation":[7,21,59],"rates,":[8],"which":[9],"allow":[10],"them":[11,100],"to":[12,27,34,71,85,101,134,168],"quickly":[13],"develop":[14],"drug-resistant":[15],"mutations.":[16,144],"Mining":[17],"relevant":[18],"rules":[19,95,141],"from":[20],"data":[22,60],"can":[23,129],"be":[24,130],"extremely":[25],"useful":[26],"understand":[28],"the":[29,55,86],"virus":[30],"adaptation":[31],"mechanism":[32],"and":[33,98,121,170],"design":[35],"drugs":[36],"that":[37],"e\u21b5ectively":[38],"counter":[39],"potentially":[40,106],"resistant":[41,107,116],"mutants.":[42,108],"Results:":[43],"We":[44],"propose":[45],"a":[46,72,91,103,148],"simple":[47],"relational":[48,94],"learning":[49,135],"approach":[50,128],"for":[51,118],"mutant":[52],"prediction":[53],"where":[54],"input":[56],"consists":[57],"of":[58,67,78,93,105,151],"with":[61,80],"drug-resistance":[62,97],"information,":[63],"either":[64],"as":[65,76],"sets":[66,77],"mutations":[68,117],"conferring":[69],"resistance":[70],"certain":[73],"drug,":[74],"or":[75],"mutants":[79,136],"information":[81],"on":[82],"their":[83],"susceptibility":[84],"drug.":[87],"The":[88,127],"algorithm":[89],"learns":[90],"set":[92,104],"characterizing":[96],"use":[99],"generate":[102],"Conclusions:":[109],"Promising":[110],"results":[111],"were":[112],"obtained":[113],"in":[114,154],"generating":[115],"both":[119],"nucleoside":[120],"nonnucleoside":[122],"HIV":[123,146],"reverse":[124],"transcriptase":[125],"inhibitors.":[126],"generalized":[131],"quite":[132],"easily":[133],"more":[139,155],"complex":[140],"correlating":[142],"multiple":[143],"Background":[145],"is":[147,165],"pandemic":[149],"cause":[150],"lethal":[152],"pathologies":[153],"than":[156],"33":[157],"million":[158],"people.":[159],"Its":[160],"horizontal":[161],"transmission":[162],"trough":[163],"mucosae":[164],"di":[166],"cult":[167],"control":[169],"treat":[171]},"counts_by_year":[{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-08-08T01:25:22.217667","created_date":"2025-10-10T00:00:00"}
