{"id":"https://openalex.org/W2100783581","doi":"https://doi.org/10.1186/1471-2105-15-292","title":"Native structure-based modeling and simulation of biomolecular systems per mouse click","display_name":"Native structure-based modeling and simulation of biomolecular systems per mouse click","publication_year":2014,"publication_date":"2014-08-29","ids":{"openalex":"https://openalex.org/W2100783581","doi":"https://doi.org/10.1186/1471-2105-15-292","mag":"2100783581","pmid":"https://pubmed.ncbi.nlm.nih.gov/25176255"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-292","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-292","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-292","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","datacite","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-292","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5033433424","display_name":"Benjamin Lutz","orcid":"https://orcid.org/0000-0002-4319-4701"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]},{"id":"https://openalex.org/I4210087370","display_name":"Applied Materials (United Kingdom)","ror":"https://ror.org/006471y50","country_code":"GB","type":"company","lineage":["https://openalex.org/I193427800","https://openalex.org/I4210087370"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Benjamin Lutz","raw_affiliation_strings":["Department of Physics, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","institution_ids":["https://openalex.org/I4210087370"]},{"raw_affiliation_string":"Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066873210","display_name":"Claude Sinner","orcid":"https://orcid.org/0000-0003-2176-685X"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]},{"id":"https://openalex.org/I4210087370","display_name":"Applied Materials (United Kingdom)","ror":"https://ror.org/006471y50","country_code":"GB","type":"company","lineage":["https://openalex.org/I193427800","https://openalex.org/I4210087370"]}],"countries":["DE","GB"],"is_corresponding":false,"raw_author_name":"Claude Sinner","raw_affiliation_strings":["Department of Physics, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Physics, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","institution_ids":["https://openalex.org/I4210087370"]},{"raw_affiliation_string":"Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5108622586","display_name":"S. Bozic","orcid":null},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Stefan Bozic","raw_affiliation_strings":["Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003330064","display_name":"Ivan Kondov","orcid":"https://orcid.org/0000-0002-8794-616X"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Ivan Kondov","raw_affiliation_strings":["Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany. ivan.kondov@kit.edu","Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany. ivan.kondov@kit.edu","institution_ids":["https://openalex.org/I102335020"]},{"raw_affiliation_string":"Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","institution_ids":["https://openalex.org/I102335020"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089380775","display_name":"Alexander Schug","orcid":"https://orcid.org/0000-0002-0534-502X"},"institutions":[{"id":"https://openalex.org/I102335020","display_name":"Karlsruhe Institute of Technology","ror":"https://ror.org/04t3en479","country_code":"DE","type":"education","lineage":["https://openalex.org/I102335020","https://openalex.org/I1305996414"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Schug","raw_affiliation_strings":["Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Steinbuch Centre for Computing, Karlsruhe Institute of Technology (KIT), Hermann-von-Helmholtz-Platz 1, 76344, Eggenstein, Leopoldshafen, Germany","institution_ids":["https://openalex.org/I102335020"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5003330064"],"corresponding_institution_ids":["https://openalex.org/I102335020"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1453,"currency":"EUR","value_usd":1567},"fwci":0.1423,"has_fulltext":true,"cited_by_count":8,"citation_normalized_percentile":{"value":0.55118638,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"15","issue":"1","first_page":"292","last_page":"292"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8693000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.8693000078201294,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.008299999870359898,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.006399999838322401,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7863825559616089},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.6279349327087402},{"id":"https://openalex.org/keywords/distributed-computing","display_name":"Distributed computing","score":0.5448014140129089},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.4805458188056946},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.4560704827308655},{"id":"https://openalex.org/keywords/software-suite","display_name":"Software suite","score":0.4384500980377197},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.43819043040275574}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7863825559616089},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.6279349327087402},{"id":"https://openalex.org/C120314980","wikidata":"https://www.wikidata.org/wiki/Q180634","display_name":"Distributed computing","level":1,"score":0.5448014140129089},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.4805458188056946},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.4560704827308655},{"id":"https://openalex.org/C2778736646","wikidata":"https://www.wikidata.org/wiki/Q1143070","display_name":"Software suite","level":3,"score":0.4384500980377197},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.43819043040275574},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-15-292","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-292","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-292","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25176255","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25176255","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:EVASTAR-Karlsruhe.de:1000046383","is_oa":false,"landing_page_url":"https://publikationen.bibliothek.kit.edu/1000046383","pdf_url":null,"source":{"id":"https://openalex.org/S4306401992","display_name":"Repository KITopen (Karlsruhe Institute of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I102335020","host_organization_name":"Karlsruhe Institute of Technology","host_organization_lineage":["https://openalex.org/I102335020"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics, 15 (1), 292/1-12","raw_type":"doc-type:article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4162935","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4162935","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"doi:10.5445/ir/1000046383","is_oa":true,"landing_page_url":"https://doi.org/10.5445/ir/1000046383","pdf_url":null,"source":{"id":"https://openalex.org/S7407052948","display_name":"KITopen","issn_l":null,"issn":[],"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":null,"is_accepted":false,"is_published":null,"raw_source_name":null,"raw_type":"article-journal"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-292","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-292","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-292","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","display_name":"Industry, innovation and infrastructure","score":0.6200000047683716}],"awards":[{"id":"https://openalex.org/G1252057166","display_name":"Multiscale Materials Modelling on High Performance Computer Architectures","funder_award_id":"261594","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2100783581.pdf","grobid_xml":"https://content.openalex.org/works/W2100783581.grobid-xml"},"referenced_works_count":67,"referenced_works":["https://openalex.org/W46148605","https://openalex.org/W379390718","https://openalex.org/W1497785975","https://openalex.org/W1535462036","https://openalex.org/W1555993967","https://openalex.org/W1568943312","https://openalex.org/W1886944764","https://openalex.org/W1964556356","https://openalex.org/W1970573715","https://openalex.org/W1973492476","https://openalex.org/W1978702956","https://openalex.org/W1978741482","https://openalex.org/W1991194470","https://openalex.org/W1993201779","https://openalex.org/W2012896985","https://openalex.org/W2027617792","https://openalex.org/W2028293439","https://openalex.org/W2036239645","https://openalex.org/W2038494121","https://openalex.org/W2040470885","https://openalex.org/W2042553652","https://openalex.org/W2043141532","https://openalex.org/W2044882887","https://openalex.org/W2051643755","https://openalex.org/W2053947235","https://openalex.org/W2056245019","https://openalex.org/W2057022167","https://openalex.org/W2065864578","https://openalex.org/W2067236515","https://openalex.org/W2072328011","https://openalex.org/W2075460992","https://openalex.org/W2081453257","https://openalex.org/W2095411560","https://openalex.org/W2100776713","https://openalex.org/W2100827887","https://openalex.org/W2101538820","https://openalex.org/W2101648527","https://openalex.org/W2103102684","https://openalex.org/W2105803236","https://openalex.org/W2107506625","https://openalex.org/W2109839728","https://openalex.org/W2111042958","https://openalex.org/W2111996486","https://openalex.org/W2114323152","https://openalex.org/W2130479394","https://openalex.org/W2131313323","https://openalex.org/W2132434309","https://openalex.org/W2144562104","https://openalex.org/W2151916727","https://openalex.org/W2160544821","https://openalex.org/W2160721947","https://openalex.org/W2161281700","https://openalex.org/W2165414288","https://openalex.org/W2168221535","https://openalex.org/W2169707043","https://openalex.org/W2170654685","https://openalex.org/W2171755502","https://openalex.org/W2257581444","https://openalex.org/W2289049654","https://openalex.org/W2314292783","https://openalex.org/W2418151149","https://openalex.org/W2482083145","https://openalex.org/W2588903505","https://openalex.org/W3143636377","https://openalex.org/W3148640261","https://openalex.org/W4252854332","https://openalex.org/W4407817475"],"related_works":["https://openalex.org/W2364921833","https://openalex.org/W2385146268","https://openalex.org/W1767718647","https://openalex.org/W2380023786","https://openalex.org/W2546696010","https://openalex.org/W1992741870","https://openalex.org/W2027487876","https://openalex.org/W4252233456","https://openalex.org/W1970097796","https://openalex.org/W2131878791"],"abstract_inverted_index":{"BACKGROUND:":[0],"Molecular":[1],"dynamics":[2],"(MD)":[3],"simulations":[4,25,80,151,194,211,254,280,297],"provide":[5],"valuable":[6],"insight":[7],"into":[8,252],"biomolecular":[9,45,326],"systems":[10,155],"at":[11],"the":[12,16,29,58,83,86,90,93,116,140,189,207,220,249,269,291,303,307,313,317,320,323,338],"atomic":[13,31],"level.":[14],"Notwithstanding":[15],"ever-increasing":[17],"power":[18,270],"of":[19,36,48,66,85,92,118,209,216,244,271,284,309,319,325],"high":[20],"performance":[21],"computers":[22],"current":[23],"MD":[24],"face":[26],"several":[27],"challenges:":[28],"fastest":[30],"movements":[32],"require":[33],"time":[34],"steps":[35],"a":[37,63,238,282],"few":[38],"femtoseconds":[39],"which":[40,241],"are":[41,109,144],"small":[42],"compared":[43],"to":[44,62,72,78,95,148,187,261,340],"relevant":[46],"timescales":[47],"milliseconds":[49],"or":[50,88,136,156],"even":[51,157,168],"seconds":[52],"for":[53,183,225,277,281,294],"large":[54,64],"conformational":[55],"motions.":[56],"At":[57,139,219],"same":[59,141,221],"time,":[60,142,222],"scalability":[61],"number":[65],"cores":[67],"is":[68,81,165],"limited":[69],"mostly":[70],"due":[71],"long-range":[73],"interactions.":[74],"An":[75],"appealing":[76],"alternative":[77],"atomic-level":[79],"coarse-graining":[82],"resolution":[84],"system":[87],"reducing":[89],"complexity":[91],"Hamiltonian":[94],"improve":[96],"sampling":[97],"while":[98],"decreasing":[99],"computational":[100],"costs.":[101],"Native":[102],"structure-based":[103,185,296],"models,":[104,108],"also":[105],"called":[106],"G\u014d-type":[107],"based":[110],"on":[111,152,195,234],"energy":[112],"landscape":[113],"theory":[114],"and":[115,163,191,201,232,246,300,305],"principle":[117],"minimal":[119],"frustration.":[120],"They":[121],"have":[122],"been":[123],"tremendously":[124],"successful":[125],"in":[126,213,322,345],"explaining":[127],"fundamental":[128],"questions":[129],"of,":[130],"e.g.,":[131,256],"protein":[132,137,278],"folding,":[133],"RNA":[134],"folding":[135,279],"function.":[138],"they":[143],"computationally":[145],"sufficiently":[146],"inexpensive":[147],"run":[149],"complex":[150,167],"smaller":[153],"computing":[154,197],"commodity":[158],"hardware.":[159],"Still,":[160],"their":[161,174,263,346],"setup":[162,208],"evaluation":[164],"quite":[166],"though":[169],"sophisticated":[170],"software":[171,289,314],"packages":[172,312],"support":[173,188],"realization.":[175],"RESULTS:":[176],"Here,":[177],"we":[178,329],"establish":[179],"an":[180],"efficient":[181],"infrastructure":[182,205],"native":[184,295],"models":[186],"community":[190,339],"enable":[192],"high-throughput":[193],"remote":[196,235],"resources":[198,236],"via":[199],"GridBeans":[200],"UNICORE":[202],"middleware.":[203],"This":[204],"organizes":[206],"such":[210,253],"resulting":[212],"increased":[214],"comparability":[215],"simulation":[217,227,311],"results.":[218],"complete":[223],"workflows":[224],"advanced":[226],"protocols":[228,245],"can":[229],"be":[230],"established":[231],"managed":[233],"by":[237,274],"graphical":[239],"interface":[240],"increases":[242],"reusability":[243],"additionally":[247],"lowers":[248],"entry":[250],"barrier":[251],"for,":[255],"experimental":[257],"scientists":[258],"who":[259],"want":[260],"compare":[262],"results":[264],"against":[265],"simulations.":[266,327],"We":[267,287],"demonstrate":[268],"this":[272],"approach":[273],"illustrating":[275],"it":[276,332],"range":[283],"proteins.":[285],"CONCLUSIONS:":[286],"present":[288],"enhancing":[290],"entire":[292],"workflow":[293],"including":[298],"exception-handling":[299],"evaluations.":[301],"Extending":[302],"capability":[304],"improving":[306],"accessibility":[308],"existing":[310],"goes":[315],"beyond":[316],"state":[318],"art":[321],"domain":[324],"Thus":[328],"expect":[330],"that":[331],"will":[333],"stimulate":[334],"more":[335,342],"individuals":[336],"from":[337],"employ":[341],"confidently":[343],"modeling":[344],"research.":[347]},"counts_by_year":[{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2019,"cited_by_count":1},{"year":2016,"cited_by_count":1}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
