{"id":"https://openalex.org/W2063124224","doi":"https://doi.org/10.1186/1471-2105-15-280","title":"HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data","display_name":"HiChIP: a high-throughput pipeline for integrative analysis of ChIP-Seq data","publication_year":2014,"publication_date":"2014-08-15","ids":{"openalex":"https://openalex.org/W2063124224","doi":"https://doi.org/10.1186/1471-2105-15-280","mag":"2063124224","pmid":"https://pubmed.ncbi.nlm.nih.gov/25128017"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-280","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-280","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-280","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-280","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085730035","display_name":"Huihuang Yan","orcid":"https://orcid.org/0000-0003-0756-2922"},"institutions":[{"id":"https://openalex.org/I87890613","display_name":"Epigenomics (Germany)","ror":"https://ror.org/0490dah44","country_code":"DE","type":"company","lineage":["https://openalex.org/I87890613"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["DE","US"],"is_corresponding":true,"raw_author_name":"Huihuang Yan","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Epigenomics Translational Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA","Epigenomics Translational Program, Center for Individualized Medicine, Mayo Clinic, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Epigenomics Translational Program, Center for Individualized Medicine, Mayo Clinic, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I87890613","https://openalex.org/I1330342723"]},{"raw_affiliation_string":"Epigenomics Translational Program, Center for Individualized Medicine, Mayo Clinic, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5086665939","display_name":"Jared M. Evans","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jared Evans","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089038373","display_name":"Mike Kalmbach","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mike Kalmbach","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5004159840","display_name":"Raymond M. Moore","orcid":"https://orcid.org/0000-0003-4196-1804"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Raymond Moore","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051222892","display_name":"Sumit Middha","orcid":"https://orcid.org/0000-0003-4135-6268"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Sumit Middha","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074719383","display_name":"Stanislav Luban","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I36258959","display_name":"University of California, San Diego","ror":"https://ror.org/0168r3w48","country_code":"US","type":"education","lineage":["https://openalex.org/I36258959"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Stanislav Luban","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Interdisciplinary Bioinformatics and Systems Biology Program, University of California at San Diego, La Jolla, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Interdisciplinary Bioinformatics and Systems Biology Program, University of California at San Diego, La Jolla, USA","institution_ids":["https://openalex.org/I36258959"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100636419","display_name":"Liguo Wang","orcid":"https://orcid.org/0000-0003-2072-4826"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Liguo Wang","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053182366","display_name":"Aditya Bhagwate","orcid":"https://orcid.org/0000-0003-0192-9594"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Aditya Bhagwate","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100770218","display_name":"Ying Li","orcid":"https://orcid.org/0000-0002-9316-2521"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Ying Li","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067865294","display_name":"Zhifu Sun","orcid":"https://orcid.org/0000-0001-8461-7523"},"institutions":[{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]},{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Zhifu Sun","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100674463","display_name":"Xianfeng Chen","orcid":"https://orcid.org/0000-0002-7531-5862"},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]},{"id":"https://openalex.org/I4210146710","display_name":"Mayo Clinic in Florida","ror":"https://ror.org/03zzw1w08","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1330342723","https://openalex.org/I4210146710"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xianfeng Chen","raw_affiliation_strings":["Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, 200 1st St SW, Rochester, MN, 55905, USA","institution_ids":["https://openalex.org/I4210146710"]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5109890619","display_name":"Jean-Pierre A. Kocher","orcid":null},"institutions":[{"id":"https://openalex.org/I1330342723","display_name":"Mayo Clinic","ror":"https://ror.org/02qp3tb03","country_code":"US","type":"funder","lineage":["https://openalex.org/I1330342723"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Jean-Pierre A Kocher","raw_affiliation_strings":["Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 1st St SW, Rochester, MN 55905, USA. Kocher.JeanPierre@mayo.edu","Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA"],"affiliations":[{"raw_affiliation_string":"Division of Biomedical Statistics and Informatics, Department of Health Sciences Research, Mayo Clinic, 200 1st St SW, Rochester, MN 55905, USA. Kocher.JeanPierre@mayo.edu","institution_ids":[]},{"raw_affiliation_string":"Department of Health Sciences Research, Mayo Clinic, Division of Biomedical Statistics and Informatics, Rochester, USA","institution_ids":["https://openalex.org/I1330342723"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":12,"corresponding_author_ids":["https://openalex.org/A5085730035"],"corresponding_institution_ids":["https://openalex.org/I1330342723","https://openalex.org/I4210146710","https://openalex.org/I87890613"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.7079,"has_fulltext":true,"cited_by_count":81,"citation_normalized_percentile":{"value":0.83966779,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"280","last_page":"280"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9966999888420105,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/pipeline","display_name":"Pipeline (software)","score":0.7191519737243652},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6807820200920105},{"id":"https://openalex.org/keywords/workflow","display_name":"Workflow","score":0.5686338543891907},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5325974822044373},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5092712640762329},{"id":"https://openalex.org/keywords/bioconductor","display_name":"Bioconductor","score":0.4999673366546631},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4646233022212982},{"id":"https://openalex.org/keywords/chip","display_name":"Chip","score":0.45741719007492065},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4573509097099304},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45366767048835754},{"id":"https://openalex.org/keywords/chromatin-immunoprecipitation","display_name":"Chromatin immunoprecipitation","score":0.4529794454574585},{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.4217302203178406},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.30624717473983765},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.29139047861099243},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25969746708869934},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.24741148948669434},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.18431857228279114},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.17924514412879944},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.13031521439552307},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.08544471859931946}],"concepts":[{"id":"https://openalex.org/C43521106","wikidata":"https://www.wikidata.org/wiki/Q2165493","display_name":"Pipeline (software)","level":2,"score":0.7191519737243652},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6807820200920105},{"id":"https://openalex.org/C177212765","wikidata":"https://www.wikidata.org/wiki/Q627335","display_name":"Workflow","level":2,"score":0.5686338543891907},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5325974822044373},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5092712640762329},{"id":"https://openalex.org/C2779694297","wikidata":"https://www.wikidata.org/wiki/Q2888953","display_name":"Bioconductor","level":3,"score":0.4999673366546631},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4646233022212982},{"id":"https://openalex.org/C165005293","wikidata":"https://www.wikidata.org/wiki/Q1074500","display_name":"Chip","level":2,"score":0.45741719007492065},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4573509097099304},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45366767048835754},{"id":"https://openalex.org/C134320426","wikidata":"https://www.wikidata.org/wiki/Q901026","display_name":"Chromatin immunoprecipitation","level":5,"score":0.4529794454574585},{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.4217302203178406},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.30624717473983765},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.29139047861099243},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25969746708869934},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.24741148948669434},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.18431857228279114},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.17924514412879944},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.13031521439552307},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.08544471859931946},{"id":"https://openalex.org/C101762097","wikidata":"https://www.wikidata.org/wiki/Q224093","display_name":"Promoter","level":4,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003627","descriptor_name":"Data Interpretation, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D014157","descriptor_name":"Transcription Factors","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D047369","descriptor_name":"Chromatin Immunoprecipitation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-15-280","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-280","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-280","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25128017","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25128017","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4152589","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4152589","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-280","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-280","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-280","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.46000000834465027,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320333659","display_name":"Center for Individualized Medicine, Mayo Clinic","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2063124224.pdf","grobid_xml":"https://content.openalex.org/works/W2063124224.grobid-xml"},"referenced_works_count":31,"referenced_works":["https://openalex.org/W1968475238","https://openalex.org/W1979594866","https://openalex.org/W1981072394","https://openalex.org/W2021341670","https://openalex.org/W2044164623","https://openalex.org/W2049684926","https://openalex.org/W2050515300","https://openalex.org/W2063007091","https://openalex.org/W2071042066","https://openalex.org/W2081942683","https://openalex.org/W2086376086","https://openalex.org/W2092988184","https://openalex.org/W2095687167","https://openalex.org/W2101384205","https://openalex.org/W2102619694","https://openalex.org/W2103441770","https://openalex.org/W2108234281","https://openalex.org/W2108834755","https://openalex.org/W2123460634","https://openalex.org/W2124514674","https://openalex.org/W2133212095","https://openalex.org/W2146303939","https://openalex.org/W2146648681","https://openalex.org/W2149627698","https://openalex.org/W2155826575","https://openalex.org/W2157009395","https://openalex.org/W2161954247","https://openalex.org/W2169318796","https://openalex.org/W2171808845","https://openalex.org/W3104066961","https://openalex.org/W4231356616"],"related_works":["https://openalex.org/W2135678793","https://openalex.org/W43224192","https://openalex.org/W90653389","https://openalex.org/W3111061871","https://openalex.org/W2151651283","https://openalex.org/W2044676948","https://openalex.org/W2099626126","https://openalex.org/W2134916359","https://openalex.org/W2071042066","https://openalex.org/W2799739256"],"abstract_inverted_index":{"HiChIP":[0,28],"is":[1,29],"a":[2,30],"comprehensive":[3],"analysis":[4],"pipeline":[5,34],"that":[6,27],"can":[7],"be":[8],"configured":[9],"to":[10],"analyze":[11],"ChIP-Seq":[12,23,40],"data":[13,24],"derived":[14],"from":[15],"varying":[16],"antibodies":[17],"and":[18,32],"experiment":[19],"designs.":[20],"Using":[21],"public":[22],"we":[25],"demonstrate":[26],"fast":[31],"reliable":[33],"for":[35],"processing":[36],"large":[37],"amounts":[38],"of":[39],"data.":[41]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":5},{"year":2023,"cited_by_count":14},{"year":2022,"cited_by_count":13},{"year":2021,"cited_by_count":14},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":8},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
