{"id":"https://openalex.org/W2131816369","doi":"https://doi.org/10.1186/1471-2105-15-279","title":"SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases","display_name":"SPARQLGraph: a web-based platform for graphically querying biological Semantic Web databases","publication_year":2014,"publication_date":"2014-08-15","ids":{"openalex":"https://openalex.org/W2131816369","doi":"https://doi.org/10.1186/1471-2105-15-279","mag":"2131816369","pmid":"https://pubmed.ncbi.nlm.nih.gov/25127889"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-279","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-279","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-279","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-279","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5039148232","display_name":"Dominik Schweiger","orcid":null},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Dominik Schweiger","raw_affiliation_strings":["Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5084751312","display_name":"Zlatko Trajanoski","orcid":"https://orcid.org/0000-0002-0636-7351"},"institutions":[{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Zlatko Trajanoski","raw_affiliation_strings":["Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089456984","display_name":"Stephan Pabinger","orcid":"https://orcid.org/0000-0001-9876-5965"},"institutions":[{"id":"https://openalex.org/I132118926","display_name":"Austrian Institute of Technology","ror":"https://ror.org/04knbh022","country_code":"AT","type":"facility","lineage":["https://openalex.org/I132118926"]},{"id":"https://openalex.org/I143397708","display_name":"Innsbruck Medical University","ror":"https://ror.org/03pt86f80","country_code":"AT","type":"education","lineage":["https://openalex.org/I143397708"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Stephan Pabinger","raw_affiliation_strings":["Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria. stephan.pabinger@gmail.com","AIT-Austrian Institute of Technology, Health & Environment Department, Molecular Diagnostics, Vienna, Austria","Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria. stephan.pabinger@gmail.com","institution_ids":["https://openalex.org/I143397708"]},{"raw_affiliation_string":"AIT-Austrian Institute of Technology, Health & Environment Department, Molecular Diagnostics, Vienna, Austria","institution_ids":["https://openalex.org/I132118926"]},{"raw_affiliation_string":"Division for Bioinformatics, Biocenter, Innsbruck Medical University, Innsbruck, Austria","institution_ids":["https://openalex.org/I143397708"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5089456984"],"corresponding_institution_ids":["https://openalex.org/I132118926","https://openalex.org/I143397708"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.5128,"has_fulltext":true,"cited_by_count":35,"citation_normalized_percentile":{"value":0.8991261,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"279","last_page":"279"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6123999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6123999953269958,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1485999971628189,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.048500001430511475,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8620253801345825},{"id":"https://openalex.org/keywords/sparql","display_name":"SPARQL","score":0.6914253234863281},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.6037006974220276},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.566816508769989},{"id":"https://openalex.org/keywords/semantic-web","display_name":"Semantic Web","score":0.5384056568145752},{"id":"https://openalex.org/keywords/data-web","display_name":"Data Web","score":0.4736141860485077},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.4489228427410126},{"id":"https://openalex.org/keywords/rdf","display_name":"RDF","score":0.43394821882247925},{"id":"https://openalex.org/keywords/semantic-web-stack","display_name":"Semantic Web Stack","score":0.4260130524635315},{"id":"https://openalex.org/keywords/graph-database","display_name":"Graph database","score":0.4219525456428528},{"id":"https://openalex.org/keywords/semantic-analytics","display_name":"Semantic analytics","score":0.41831421852111816},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.2911723852157593},{"id":"https://openalex.org/keywords/web-service","display_name":"Web service","score":0.24450552463531494}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8620253801345825},{"id":"https://openalex.org/C41009113","wikidata":"https://www.wikidata.org/wiki/Q54871","display_name":"SPARQL","level":4,"score":0.6914253234863281},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.6037006974220276},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.566816508769989},{"id":"https://openalex.org/C2129575","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Semantic Web","level":2,"score":0.5384056568145752},{"id":"https://openalex.org/C162005631","wikidata":"https://www.wikidata.org/wiki/Q54837","display_name":"Data Web","level":3,"score":0.4736141860485077},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.4489228427410126},{"id":"https://openalex.org/C147497476","wikidata":"https://www.wikidata.org/wiki/Q54872","display_name":"RDF","level":3,"score":0.43394821882247925},{"id":"https://openalex.org/C167379230","wikidata":"https://www.wikidata.org/wiki/Q1026884","display_name":"Semantic Web Stack","level":3,"score":0.4260130524635315},{"id":"https://openalex.org/C176225458","wikidata":"https://www.wikidata.org/wiki/Q595971","display_name":"Graph database","level":3,"score":0.4219525456428528},{"id":"https://openalex.org/C148792806","wikidata":"https://www.wikidata.org/wiki/Q7449046","display_name":"Semantic analytics","level":4,"score":0.41831421852111816},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.2911723852157593},{"id":"https://openalex.org/C35578498","wikidata":"https://www.wikidata.org/wiki/Q193424","display_name":"Web service","level":2,"score":0.24450552463531494},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012660","descriptor_name":"Semantics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-15-279","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-279","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-279","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25127889","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25127889","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3113951","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4148538","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-279","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-279","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-279","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320326775","display_name":"Standortagentur Tirol","ror":"https://ror.org/0519vt613"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2131816369.pdf","grobid_xml":"https://content.openalex.org/works/W2131816369.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W188472058","https://openalex.org/W1542389185","https://openalex.org/W1973661008","https://openalex.org/W2009313526","https://openalex.org/W2020796560","https://openalex.org/W2075694192","https://openalex.org/W2084975981","https://openalex.org/W2096541451","https://openalex.org/W2107580398","https://openalex.org/W2113843972","https://openalex.org/W2116540200","https://openalex.org/W2127069089","https://openalex.org/W2133739876","https://openalex.org/W2147714160","https://openalex.org/W2154139219","https://openalex.org/W2159482845","https://openalex.org/W2165428180","https://openalex.org/W2183213874","https://openalex.org/W4213060373","https://openalex.org/W4294216483","https://openalex.org/W6604738857"],"related_works":["https://openalex.org/W2349698472","https://openalex.org/W2366430559","https://openalex.org/W2005492920","https://openalex.org/W2023110884","https://openalex.org/W1985801232","https://openalex.org/W1975429881","https://openalex.org/W1521613906","https://openalex.org/W2069569467","https://openalex.org/W3150576547","https://openalex.org/W2159024133"],"abstract_inverted_index":{"BACKGROUND:":[0],"Semantic":[1,28,66,118],"Web":[2,29,67,119],"has":[3],"established":[4],"itself":[5],"as":[6,124],"a":[7,22,32,51,57],"framework":[8],"for":[9,25,87,116],"using":[10],"and":[11,16,53,95,134],"sharing":[12],"data":[13],"across":[14],"applications":[15],"database":[17,135],"boundaries.":[18],"Here,":[19],"we":[20],"present":[21],"web-based":[23],"platform":[24],"querying":[26],"biological":[27,89,117],"databases":[30,71,120],"in":[31],"graphical":[33,111],"way.":[34],"RESULTS:":[35],"SPARQLGraph":[36],"offers":[37],"an":[38],"intuitive":[39],"drag":[40],"&":[41],"drop":[42],"query":[43,52,98,132],"builder,":[44],"which":[45,100],"converts":[46],"the":[47,70,73,127],"visual":[48],"graph":[49],"into":[50],"executes":[54],"it":[55,81,125],"on":[56],"public":[58],"endpoint.":[59],"The":[60,137],"tool":[61],"integrates":[62],"several":[63,83],"publicly":[64],"available":[65,141],"databases,":[68],"including":[69],"of":[72,113,129],"just":[74],"recently":[75],"released":[76],"EBI":[77],"RDF":[78],"platform.":[79],"Furthermore,":[80],"provides":[82],"predefined":[84],"template":[85],"queries":[86,115],"answering":[88],"questions.":[90],"Users":[91],"can":[92,101],"easily":[93],"create":[94],"save":[96],"new":[97,110],"graphs,":[99],"also":[102],"be":[103],"shared":[104],"with":[105],"other":[106],"researchers.":[107],"CONCLUSIONS:":[108],"This":[109],"way":[112],"creating":[114],"considerably":[121],"facilitates":[122],"usability":[123],"removes":[126],"requirement":[128],"knowing":[130],"specific":[131],"languages":[133],"structures.":[136],"system":[138],"is":[139],"freely":[140],"at":[142],"http://sparqlgraph.i-med.ac.at.":[143]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":7},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":7},{"year":2015,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
