{"id":"https://openalex.org/W1974095426","doi":"https://doi.org/10.1186/1471-2105-15-277","title":"CRF-based models of protein surfaces improve protein-protein interaction site predictions","display_name":"CRF-based models of protein surfaces improve protein-protein interaction site predictions","publication_year":2014,"publication_date":"2014-08-13","ids":{"openalex":"https://openalex.org/W1974095426","doi":"https://doi.org/10.1186/1471-2105-15-277","mag":"1974095426","pmid":"https://pubmed.ncbi.nlm.nih.gov/25124108"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-277","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-277","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-277","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-277","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5048864421","display_name":"Zhijie Dong","orcid":"https://orcid.org/0000-0003-0979-812X"},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Zhijie Dong","raw_affiliation_strings":["Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006217474","display_name":"Keyu Wang","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Keyu Wang","raw_affiliation_strings":["Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103952986","display_name":"Truong Khanh Linh Dang","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Truong Khanh Linh Dang","raw_affiliation_strings":["Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085199270","display_name":"Mehmet G\u00fclta\u015f","orcid":"https://orcid.org/0000-0003-3297-3192"},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Mehmet G\u00fcltas","raw_affiliation_strings":["Institute of Bioinformatics, University of G\u00f6ttingen, Goldschmidtstr. 1, 37077, G\u00f6ttingen, Germany","Institute of Bioinformatics, University of G\u00f6ttingen, G\u00f6ttingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Bioinformatics, University of G\u00f6ttingen, Goldschmidtstr. 1, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Institute of Bioinformatics, University of G\u00f6ttingen, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079124481","display_name":"Marlon Welter","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Marlon Welter","raw_affiliation_strings":["Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr. 7, 37077, G\u00f6ttingen, Germany","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024325859","display_name":"Torsten Wierschin","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Torsten Wierschin","raw_affiliation_strings":["Institut f\u00fcr Mathematik und Informatik, Walther-Rathenau-Str. 47, 17487, Greifswald, Germany","Institut f\u00fcr Mathematik und Informatik, Greifswald, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Mathematik und Informatik, Walther-Rathenau-Str. 47, 17487, Greifswald, Germany","institution_ids":[]},{"raw_affiliation_string":"Institut f\u00fcr Mathematik und Informatik, Greifswald, Germany","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025051195","display_name":"Mario Stanke","orcid":"https://orcid.org/0000-0001-8696-0384"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Mario Stanke","raw_affiliation_strings":["Institut f\u00fcr Mathematik und Informatik, Walther-Rathenau-Str. 47, 17487, Greifswald, Germany","Institut f\u00fcr Mathematik und Informatik, Greifswald, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Mathematik und Informatik, Walther-Rathenau-Str. 47, 17487, Greifswald, Germany","institution_ids":[]},{"raw_affiliation_string":"Institut f\u00fcr Mathematik und Informatik, Greifswald, Germany","institution_ids":[]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5113553795","display_name":"Stephan Waack","orcid":null},"institutions":[{"id":"https://openalex.org/I74656192","display_name":"University of G\u00f6ttingen","ror":"https://ror.org/01y9bpm73","country_code":"DE","type":"education","lineage":["https://openalex.org/I74656192"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stephan Waack","raw_affiliation_strings":["Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr, 7, 37077 G\u00f6ttingen, Germany. waack@informatik.uni-goettingen.de","Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Computer Science, University of G\u00f6ttingen, Goldschmidtstr, 7, 37077 G\u00f6ttingen, Germany. waack@informatik.uni-goettingen.de","institution_ids":["https://openalex.org/I74656192"]},{"raw_affiliation_string":"Inst. of Comput. Sci., Univ. of Gottingen, Gottingen, Germany","institution_ids":["https://openalex.org/I74656192"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5113553795"],"corresponding_institution_ids":["https://openalex.org/I74656192"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1428,"currency":"EUR","value_usd":1540},"fwci":1.2564,"has_fulltext":true,"cited_by_count":24,"citation_normalized_percentile":{"value":0.78105554,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"277","last_page":"277"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7562999725341797,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.7562999725341797,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.14429999887943268,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.035599999129772186,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5801230072975159},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.48417928814888},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.46332448720932007},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4402805268764496},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.4250478744506836},{"id":"https://openalex.org/keywords/pattern-recognition","display_name":"Pattern recognition (psychology)","score":0.3827538788318634},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.38232725858688354},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.34541183710098267}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5801230072975159},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.48417928814888},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.46332448720932007},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4402805268764496},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.4250478744506836},{"id":"https://openalex.org/C153180895","wikidata":"https://www.wikidata.org/wiki/Q7148389","display_name":"Pattern recognition (psychology)","level":2,"score":0.3827538788318634},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.38232725858688354},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.34541183710098267}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013499","descriptor_name":"Surface Properties","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-15-277","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-277","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-277","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25124108","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25124108","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:goescholar:1/10762","is_oa":true,"landing_page_url":"http://resolver.sub.uni-goettingen.de/purl?gs-1/10762","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journalArticle"},{"id":"pmh:oai:publications.goettingen-research-online.de:2/32656","is_oa":true,"landing_page_url":"https://resolver.sub.uni-goettingen.de/purl?gs-1/10762","pdf_url":null,"source":{"id":"https://openalex.org/S4306401634","display_name":"GoeScholar  The Publication Server of the Georg-August-Universit\u00e4t G\u00f6ttingen (Georg-August-Universit\u00e4t G\u00f6ttingen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4210122495","host_organization_name":"Asklepios Klinik St. Georg","host_organization_lineage":["https://openalex.org/I4210122495"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"journal_article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4150965","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4150965","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-277","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-277","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-277","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1974095426.pdf","grobid_xml":"https://content.openalex.org/works/W1974095426.grobid-xml"},"referenced_works_count":49,"referenced_works":["https://openalex.org/W1483099488","https://openalex.org/W1528012351","https://openalex.org/W1580328099","https://openalex.org/W1585529040","https://openalex.org/W1595840999","https://openalex.org/W1979237722","https://openalex.org/W2000093524","https://openalex.org/W2033855745","https://openalex.org/W2041673942","https://openalex.org/W2043699100","https://openalex.org/W2046548222","https://openalex.org/W2047468595","https://openalex.org/W2048917743","https://openalex.org/W2050625197","https://openalex.org/W2051434435","https://openalex.org/W2056756773","https://openalex.org/W2057849368","https://openalex.org/W2068265376","https://openalex.org/W2069663555","https://openalex.org/W2075231115","https://openalex.org/W2088600132","https://openalex.org/W2097697746","https://openalex.org/W2103485392","https://openalex.org/W2104760790","https://openalex.org/W2114394047","https://openalex.org/W2115410056","https://openalex.org/W2120247405","https://openalex.org/W2121166097","https://openalex.org/W2124904677","https://openalex.org/W2126414848","https://openalex.org/W2126755078","https://openalex.org/W2136832587","https://openalex.org/W2141099517","https://openalex.org/W2141627824","https://openalex.org/W2143881057","https://openalex.org/W2147880316","https://openalex.org/W2147974023","https://openalex.org/W2148219066","https://openalex.org/W2153606085","https://openalex.org/W2156515921","https://openalex.org/W2157576293","https://openalex.org/W2157892451","https://openalex.org/W2161975439","https://openalex.org/W2164391585","https://openalex.org/W2166814967","https://openalex.org/W2167315103","https://openalex.org/W2487770199","https://openalex.org/W2598224856","https://openalex.org/W2624029728"],"related_works":["https://openalex.org/W2356597680","https://openalex.org/W2114846443","https://openalex.org/W2487162673","https://openalex.org/W3102147106","https://openalex.org/W2093471820","https://openalex.org/W2942366970","https://openalex.org/W2793211469","https://openalex.org/W2949152769","https://openalex.org/W2963336968","https://openalex.org/W2805329439"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,55,153,267],"identification":[2],"of":[3,18,32,71,98,117,148,155,166,171,181,191,283,322],"protein-protein":[4,142,310],"interaction":[5],"sites":[6],"is":[7,22,47,57,235,253,269,325],"a":[8,23,39,118,124,138,264,303],"computationally":[9],"challenging":[10],"task":[11],"and":[12,123,214,243],"important":[13],"for":[14,128],"understanding":[15],"the":[16,49,53,66,69,72,92,96,146,149,156,162,167,169,188,195,206,216,238,244,250,258,281,284,314],"biology":[17],"protein":[19,150],"complexes.":[20],"There":[21],"rich":[24],"literature":[25],"in":[26,85,95],"this":[27,61,76],"field.":[28],"A":[29,319],"broad":[30],"class":[31],"approaches":[33],"assign":[34],"to":[35,52,91,133,136,187,222,272,279,306],"each":[36],"candidate":[37],"residue":[38,50,240,246],"real-valued":[40],"score":[41,241,247],"that":[42,48,231,273,300],"measures":[43],"how":[44,132],"likely":[45],"it":[46],"belongs":[51],"interface.":[54],"prediction":[56,282],"obtained":[58],"by":[59,102,200,209,288],"thresholding":[60],"score.Some":[62],"probabilistic":[63],"models":[64],"classify":[65],"residues":[67,190],"on":[68,145,161,293],"basis":[70],"posterior":[73],"probabilities.":[74],"In":[75,107],"paper,":[77],"we":[78,130,229,276],"introduce":[79],"pairwise":[80],"conditional":[81],"random":[82],"fields":[83],"(pCRFs)":[84],"which":[86,172],"edges":[87],"are":[88,158,248,260,316],"not":[89],"restricted":[90,271],"backbone":[93],"as":[94],"case":[97],"linear-chain":[99],"CRFs":[100],"utilized":[101],"Li":[103],"et":[104,202,211,224,290],"al.":[105,203,212,225,291],"(2007).":[106],"fact,":[108],"any":[109],"3D-neighborhood":[110],"relation":[111],"can":[112],"be":[113,174],"modeled.":[114],"On":[115],"grounds":[116],"generalized":[119],"Viterbi":[120],"inference":[121],"algorithm":[122],"piecewise":[125],"training":[126],"process":[127],"pCRFs,":[129],"demonstrate":[131],"utilize":[134],"pCRFs":[135,301],"enhance":[137],"given":[139,237,313],"residue-wise":[140,308],"score-based":[141,309],"interface":[143,163,239,311],"predictor":[144,168],"surface":[147,189],"under":[151],"study.":[152],"features":[154],"pCRF":[157],"solely":[159],"based":[160],"predictions":[164],"scores":[165,185,315],"performance":[170],"shall":[173],"improved.":[175],"RESULTS:":[176],"We":[177],"performed":[178],"three":[179],"sets":[180],"experiments":[182],"with":[183],"synthetic":[184],"assigned":[186],"proteins":[192],"taken":[193],"from":[194,205,215],"data":[196,219],"set":[197,220],"PlaneDimers":[198],"compiled":[199],"Zellner":[201,289],"(2011),":[204],"list":[207],"published":[208],"Keskin":[210],"(2004)":[213],"very":[217],"recent":[218],"due":[221],"Cukuroglu":[223],"(2014).":[226],"That":[227],"way":[228],"demonstrated":[230],"our":[232,323],"pCRF-based":[233,251],"enhancer":[234,252],"effective":[236],"distribution":[242],"non-interface":[245],"unimodal.Moreover,":[249],"also":[254],"successfully":[255],"applicable,":[256],"if":[257],"distributions":[259],"only":[261],"unimodal":[262],"over":[263],"certain":[265],"sub-domain.":[266],"improvement":[268],"then":[270],"domain.":[274],"Thus":[275],"were":[277],"able":[278],"improve":[280,307],"PresCont":[285],"server":[286],"devised":[287],"(2011)":[292],"PlaneDimers.":[294],"CONCLUSIONS:":[295],"Our":[296],"results":[297],"strongly":[298],"suggest":[299],"form":[302],"methodological":[304],"framework":[305],"predictors":[312],"appropriately":[317],"distributed.":[318],"prototypical":[320],"implementation":[321],"method":[324],"accessible":[326],"at":[327],"http://ppicrf.informatik.uni-goettingen.de/index.html.":[328]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-02T09:51:11.867554","created_date":"2025-10-10T00:00:00"}
