{"id":"https://openalex.org/W2005381675","doi":"https://doi.org/10.1186/1471-2105-15-259","title":"Helium: visualization of large scale plant pedigrees","display_name":"Helium: visualization of large scale plant pedigrees","publication_year":2014,"publication_date":"2014-08-01","ids":{"openalex":"https://openalex.org/W2005381675","doi":"https://doi.org/10.1186/1471-2105-15-259","mag":"2005381675","pmid":"https://pubmed.ncbi.nlm.nih.gov/25085009"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-259","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-259","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-259","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-259","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5022489667","display_name":"Paul D. Shaw","orcid":"https://orcid.org/0000-0002-0202-1150"},"institutions":[{"id":"https://openalex.org/I15477984","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127","country_code":"GB","type":"funder","lineage":["https://openalex.org/I15477984"]},{"id":"https://openalex.org/I251738","display_name":"Edinburgh Napier University","ror":"https://ror.org/03zjvnn91","country_code":"GB","type":"education","lineage":["https://openalex.org/I251738"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Paul D Shaw","raw_affiliation_strings":["Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK. paul.shaw@hutton.ac.uk","School of Computing, Edinburgh Napier University, Edinburgh, UK","Information and Computational Sciences, The James Hutton Institute, Invergowrie, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee DD2 5DA, UK. paul.shaw@hutton.ac.uk","institution_ids":["https://openalex.org/I15477984"]},{"raw_affiliation_string":"School of Computing, Edinburgh Napier University, Edinburgh, UK","institution_ids":["https://openalex.org/I251738"]},{"raw_affiliation_string":"Information and Computational Sciences, The James Hutton Institute, Invergowrie, UK","institution_ids":["https://openalex.org/I15477984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088565793","display_name":"Martin Graham","orcid":"https://orcid.org/0000-0002-7882-4881"},"institutions":[{"id":"https://openalex.org/I251738","display_name":"Edinburgh Napier University","ror":"https://ror.org/03zjvnn91","country_code":"GB","type":"education","lineage":["https://openalex.org/I251738"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin Graham","raw_affiliation_strings":["School of Computing, Edinburgh Napier University, 10 Colinton Road, Edinburgh, EH10 5DT, UK","School of Computing, Edinburgh Napier University, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Edinburgh Napier University, 10 Colinton Road, Edinburgh, EH10 5DT, UK","institution_ids":["https://openalex.org/I251738"]},{"raw_affiliation_string":"School of Computing, Edinburgh Napier University, Edinburgh, UK","institution_ids":["https://openalex.org/I251738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076694922","display_name":"Jessie Kennedy","orcid":"https://orcid.org/0000-0002-0023-2595"},"institutions":[{"id":"https://openalex.org/I251738","display_name":"Edinburgh Napier University","ror":"https://ror.org/03zjvnn91","country_code":"GB","type":"education","lineage":["https://openalex.org/I251738"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jessie Kennedy","raw_affiliation_strings":["School of Computing, Edinburgh Napier University, 10 Colinton Road, Edinburgh, EH10 5DT, UK","School of Computing, Edinburgh Napier University, Edinburgh, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"School of Computing, Edinburgh Napier University, 10 Colinton Road, Edinburgh, EH10 5DT, UK","institution_ids":["https://openalex.org/I251738"]},{"raw_affiliation_string":"School of Computing, Edinburgh Napier University, Edinburgh, UK","institution_ids":["https://openalex.org/I251738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022036984","display_name":"Iain Milne","orcid":"https://orcid.org/0000-0002-4126-0859"},"institutions":[{"id":"https://openalex.org/I15477984","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127","country_code":"GB","type":"funder","lineage":["https://openalex.org/I15477984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Iain Milne","raw_affiliation_strings":["Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK","Information and Computational Sciences, The James Hutton Institute, Invergowrie, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK","institution_ids":["https://openalex.org/I15477984"]},{"raw_affiliation_string":"Information and Computational Sciences, The James Hutton Institute, Invergowrie, UK","institution_ids":["https://openalex.org/I15477984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038782060","display_name":"David Marshall","orcid":"https://orcid.org/0000-0001-9309-2570"},"institutions":[{"id":"https://openalex.org/I15477984","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127","country_code":"GB","type":"funder","lineage":["https://openalex.org/I15477984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David F Marshall","raw_affiliation_strings":["Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK","Information and Computational Sciences, The James Hutton Institute, Invergowrie, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Information and Computational Sciences, The James Hutton Institute, Invergowrie, Dundee, DD2 5DA, UK","institution_ids":["https://openalex.org/I15477984"]},{"raw_affiliation_string":"Information and Computational Sciences, The James Hutton Institute, Invergowrie, UK","institution_ids":["https://openalex.org/I15477984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5022489667"],"corresponding_institution_ids":["https://openalex.org/I15477984","https://openalex.org/I251738"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.7194,"has_fulltext":true,"cited_by_count":81,"citation_normalized_percentile":{"value":0.92140824,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"259","last_page":"259"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.8870000243186951,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.8870000243186951,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10616","display_name":"Smart Agriculture and AI","score":0.013700000010430813,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12093","display_name":"Greenhouse Technology and Climate Control","score":0.009200000204145908,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7753767967224121},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6584622859954834},{"id":"https://openalex.org/keywords/pedigree-chart","display_name":"Pedigree chart","score":0.6370244026184082},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.5938114523887634},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.5405283570289612},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.5044494867324829},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.49332085251808167},{"id":"https://openalex.org/keywords/scale","display_name":"Scale (ratio)","score":0.49108386039733887},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4884185194969177},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.46937990188598633},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.457307368516922},{"id":"https://openalex.org/keywords/adaptation","display_name":"Adaptation (eye)","score":0.45040518045425415},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2333255410194397},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2188030183315277},{"id":"https://openalex.org/keywords/cartography","display_name":"Cartography","score":0.10063114762306213},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.09603482484817505},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08275800943374634},{"id":"https://openalex.org/keywords/geography","display_name":"Geography","score":0.07493659853935242}],"concepts":[{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7753767967224121},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6584622859954834},{"id":"https://openalex.org/C22593422","wikidata":"https://www.wikidata.org/wiki/Q3242583","display_name":"Pedigree chart","level":3,"score":0.6370244026184082},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.5938114523887634},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.5405283570289612},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.5044494867324829},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.49332085251808167},{"id":"https://openalex.org/C2778755073","wikidata":"https://www.wikidata.org/wiki/Q10858537","display_name":"Scale (ratio)","level":2,"score":0.49108386039733887},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4884185194969177},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.46937990188598633},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.457307368516922},{"id":"https://openalex.org/C139807058","wikidata":"https://www.wikidata.org/wiki/Q352374","display_name":"Adaptation (eye)","level":2,"score":0.45040518045425415},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2333255410194397},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2188030183315277},{"id":"https://openalex.org/C58640448","wikidata":"https://www.wikidata.org/wiki/Q42515","display_name":"Cartography","level":1,"score":0.10063114762306213},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.09603482484817505},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08275800943374634},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.07493659853935242},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C169760540","wikidata":"https://www.wikidata.org/wiki/Q207011","display_name":"Neuroscience","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000483","descriptor_name":"Alleles","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001467","descriptor_name":"Hordeum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001467","descriptor_name":"Hordeum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001467","descriptor_name":"Hordeum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001947","descriptor_name":"Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001947","descriptor_name":"Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001947","descriptor_name":"Breeding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003299","descriptor_name":"Cooperative Behavior","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010641","descriptor_name":"Phenotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-15-259","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-259","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-259","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25085009","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25085009","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:discovery.dundee.ac.uk:openaire/937dfe7b-133a-4eb2-bacc-90d25e23582d","is_oa":true,"landing_page_url":"https://discovery.dundee.ac.uk/en/publications/937dfe7b-133a-4eb2-bacc-90d25e23582d","pdf_url":null,"source":{"id":"https://openalex.org/S4306400523","display_name":"Discovery Research Portal (University of Dundee)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I177639307","host_organization_name":"University of Dundee","host_organization_lineage":["https://openalex.org/I177639307"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Shaw, P D, Graham, M, Kennedy, J, Milne, I & Marshall, D F 2014, 'Helium : visualization of large scale plant pedigrees', BMC Bioinformatics, vol. 15, 259. https://doi.org/10.1186/1471-2105-15-259","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:pubmedcentral.nih.gov:4133633","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4133633","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:napier-surface.worktribe.com:180309","is_oa":true,"landing_page_url":"https://napier-surface.worktribe.com/180309/1/Helium%3A%20visualization%20of%20large%20scale%20plant%20pedigrees","pdf_url":null,"source":{"id":"https://openalex.org/S4306400544","display_name":"Research Output (Edinburgh Napier University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I251738","host_organization_name":"Edinburgh Napier University","host_organization_lineage":["https://openalex.org/I251738"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"},{"id":"pmh:oai:repository@napier.ac.uk:180309","is_oa":true,"landing_page_url":"http://researchrepository.napier.ac.uk/id/eprint/7262","pdf_url":null,"source":{"id":"https://openalex.org/S4306402591","display_name":"Edinburgh Napier Research Repository (Edinburgh Napier University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I251738","host_organization_name":"Edinburgh Napier University","host_organization_lineage":["https://openalex.org/I251738"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-259","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-259","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-259","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/13","score":0.7699999809265137,"display_name":"Climate action"}],"awards":[{"id":"https://openalex.org/G3423977123","display_name":null,"funder_award_id":"BB/L027143/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"},{"id":"https://openalex.org/G4741169785","display_name":"Biological Visualisation Network","funder_award_id":"BB/L027143/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320312695","display_name":"Rural and Environment Science and Analytical Services Division","ror":null},{"id":"https://openalex.org/F4320313269","display_name":"Scottish Government","ror":"https://ror.org/04v2xmd71"},{"id":"https://openalex.org/F4320313466","display_name":"James Hutton Institute","ror":"https://ror.org/03rzp5127"},{"id":"https://openalex.org/F4320320619","display_name":"Edinburgh Napier University","ror":"https://ror.org/03zjvnn91"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2005381675.pdf","grobid_xml":"https://content.openalex.org/works/W2005381675.grobid-xml"},"referenced_works_count":41,"referenced_works":["https://openalex.org/W153582504","https://openalex.org/W1502938161","https://openalex.org/W1516174417","https://openalex.org/W1559069928","https://openalex.org/W1783808764","https://openalex.org/W1823329909","https://openalex.org/W1970569592","https://openalex.org/W1978116729","https://openalex.org/W1993849509","https://openalex.org/W1995923922","https://openalex.org/W1997424334","https://openalex.org/W2031837472","https://openalex.org/W2040792642","https://openalex.org/W2041852733","https://openalex.org/W2058203255","https://openalex.org/W2058437214","https://openalex.org/W2060205664","https://openalex.org/W2061656141","https://openalex.org/W2061786471","https://openalex.org/W2065669787","https://openalex.org/W2095094773","https://openalex.org/W2098417174","https://openalex.org/W2099162995","https://openalex.org/W2100966644","https://openalex.org/W2105762136","https://openalex.org/W2107935245","https://openalex.org/W2114566476","https://openalex.org/W2116904179","https://openalex.org/W2122050911","https://openalex.org/W2129518880","https://openalex.org/W2141466899","https://openalex.org/W2142493242","https://openalex.org/W2147248889","https://openalex.org/W2156580793","https://openalex.org/W2158875345","https://openalex.org/W2164710696","https://openalex.org/W2171381161","https://openalex.org/W2182218214","https://openalex.org/W2330407944","https://openalex.org/W2781767242","https://openalex.org/W3149637534"],"related_works":["https://openalex.org/W4225274103","https://openalex.org/W2013728941","https://openalex.org/W2154046714","https://openalex.org/W2579659702","https://openalex.org/W2189613078","https://openalex.org/W1574055964","https://openalex.org/W2923661510","https://openalex.org/W3003759491","https://openalex.org/W2542318691","https://openalex.org/W2547096368"],"abstract_inverted_index":{"BACKGROUND:":[0],"Plant":[1],"breeders":[2,75],"use":[3],"an":[4,144,173],"increasingly":[5],"diverse":[6],"range":[7],"of":[8,30,110,143,163,195],"data":[9,69,115,164],"types":[10,165],"to":[11,18,44,55,64,76,88,98,116,128,137,158,171],"identify":[12],"lines":[13,82],"with":[14,70,134,167,191],"desirable":[15],"characteristics":[16],"suitable":[17],"be":[19,45,56],"taken":[20],"forward":[21],"in":[22,86,176,201],"plant":[23,169],"breeding":[24],"programmes.":[25],"There":[26],"are":[27,84],"a":[28,51,105,118,130,161],"number":[29,162],"key":[31],"morphological":[32],"and":[33,40,47,66,96,107,139],"physiological":[34],"traits,":[35],"such":[36],"as":[37],"disease":[38],"resistance":[39],"yield":[41],"that":[42,60,83,154,187,197],"need":[43],"maintained":[46],"improved":[48],"upon":[49],"if":[50],"commercial":[52],"variety":[53],"is":[54],"successful.":[57],"Computational":[58],"tools":[59],"provide":[61],"the":[62,81,91,141,192],"ability":[63],"integrate":[65,160],"visualize":[67],"this":[68,126],"pedigree":[71,120,146,181],"structure,":[72],"will":[73],"enable":[74],"make":[77],"better":[78],"decisions":[79],"on":[80],"used":[85,104,125,200],"crossings":[87],"meet":[89],"both":[90],"demands":[92],"for":[93],"increased":[94],"yield/production":[95],"adaptation":[97],"climate":[99],"change.":[100],"RESULTS:":[101],"We":[102,123,152,183],"have":[103,184,199],"large":[106,168],"unique":[108],"set":[109],"experimental":[111],"barley":[112],"(H.":[113],"vulgare)":[114],"develop":[117],"prototype":[119,127],"visualization":[121,147,203],"system.":[122],"then":[124],"perform":[129],"subjective":[131],"user":[132],"evaluation":[133],"domain":[135],"experts":[136],"guide":[138],"direct":[140],"development":[142],"interactive":[145],"tool":[148],"called":[149],"Helium.":[150],"CONCLUSIONS:":[151],"show":[153],"Helium":[155],"allows":[156],"users":[157,188],"easily":[159],"along":[166],"pedigrees":[170,196],"offer":[172],"integrated":[174],"environment":[175],"which":[177],"they":[178],"can":[179],"explore":[180],"data.":[182],"also":[185],"verified":[186],"were":[189],"happy":[190],"abstract":[193],"representation":[194],"we":[198],"our":[202],"tool.":[204]},"counts_by_year":[{"year":2026,"cited_by_count":4},{"year":2025,"cited_by_count":10},{"year":2024,"cited_by_count":10},{"year":2023,"cited_by_count":7},{"year":2022,"cited_by_count":9},{"year":2021,"cited_by_count":10},{"year":2020,"cited_by_count":11},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1}],"updated_date":"2026-06-24T13:16:06.693445","created_date":"2025-10-10T00:00:00"}
