{"id":"https://openalex.org/W2037900507","doi":"https://doi.org/10.1186/1471-2105-15-202","title":"Addressing the unmet need for visualizing conditional random fields in biological data","display_name":"Addressing the unmet need for visualizing conditional random fields in biological data","publication_year":2014,"publication_date":"2014-07-07","ids":{"openalex":"https://openalex.org/W2037900507","doi":"https://doi.org/10.1186/1471-2105-15-202","mag":"2037900507","pmid":"https://pubmed.ncbi.nlm.nih.gov/25000815"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-202","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-202","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-202","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-202","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049477607","display_name":"William C. Ray","orcid":"https://orcid.org/0000-0002-4207-250X"},"institutions":[{"id":"https://openalex.org/I1314135232","display_name":"Nationwide Children's Hospital","ror":"https://ror.org/003rfsp33","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1314135232"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"William C Ray","raw_affiliation_strings":["Nationwide Children's Hospital, 575 Children's Crossroad, 43215 Columbus, OH, USA. ray.29@osu.edu","The Ohio State University, Columbus, USA","Nationwide Children\u2019s Hospital, Columbus, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nationwide Children's Hospital, 575 Children's Crossroad, 43215 Columbus, OH, USA. ray.29@osu.edu","institution_ids":["https://openalex.org/I1314135232"]},{"raw_affiliation_string":"The Ohio State University, Columbus, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Nationwide Children\u2019s Hospital, Columbus, USA","institution_ids":["https://openalex.org/I1314135232"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5078797319","display_name":"Samuel L. Wolock","orcid":"https://orcid.org/0000-0002-2120-4788"},"institutions":[{"id":"https://openalex.org/I1314135232","display_name":"Nationwide Children's Hospital","ror":"https://ror.org/003rfsp33","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1314135232"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Samuel L Wolock","raw_affiliation_strings":["Nationwide Children\u2019s Hospital, 575 Children\u2019s Crossroad, 43215, Columbus, OH, USA","Nationwide children's Hospital, columbus, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nationwide Children\u2019s Hospital, 575 Children\u2019s Crossroad, 43215, Columbus, OH, USA","institution_ids":["https://openalex.org/I1314135232"]},{"raw_affiliation_string":"Nationwide children's Hospital, columbus, USA","institution_ids":["https://openalex.org/I1314135232"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5088566643","display_name":"Nicholas Callahan","orcid":"https://orcid.org/0000-0002-2660-5679"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Nicholas W Callahan","raw_affiliation_strings":["The Ohio State University, 100 W. 18th Ave, 43210, Columbus, OH, USA","The Ohio State University Columbus, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State University, 100 W. 18th Ave, 43210, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University Columbus, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055608769","display_name":"Min Dong","orcid":"https://orcid.org/0000-0002-5907-8318"},"institutions":[{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Min Dong","raw_affiliation_strings":["Miami University, 501 E. High St., 45056, Oxford, OH, USA","Miami University , Oxford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Miami University, 501 E. High St., 45056, Oxford, OH, USA","institution_ids":["https://openalex.org/I83328450"]},{"raw_affiliation_string":"Miami University , Oxford, USA","institution_ids":["https://openalex.org/I83328450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011758500","display_name":"Qingshun Quinn Li","orcid":"https://orcid.org/0000-0003-4105-1480"},"institutions":[{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Q Quinn Li","raw_affiliation_strings":["Miami University, 501 E. High St., 45056, Oxford, OH, USA","Miami University , Oxford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Miami University, 501 E. High St., 45056, Oxford, OH, USA","institution_ids":["https://openalex.org/I83328450"]},{"raw_affiliation_string":"Miami University , Oxford, USA","institution_ids":["https://openalex.org/I83328450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101531536","display_name":"Chun Liang","orcid":"https://orcid.org/0000-0003-1996-6027"},"institutions":[{"id":"https://openalex.org/I83328450","display_name":"Miami University","ror":"https://ror.org/05nbqxr67","country_code":"US","type":"education","lineage":["https://openalex.org/I83328450"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chun Liang","raw_affiliation_strings":["Miami University, 501 E. High St., 45056, Oxford, OH, USA","Miami University , Oxford, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Miami University, 501 E. High St., 45056, Oxford, OH, USA","institution_ids":["https://openalex.org/I83328450"]},{"raw_affiliation_string":"Miami University , Oxford, USA","institution_ids":["https://openalex.org/I83328450"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5013114112","display_name":"Thomas J. Magliery","orcid":"https://orcid.org/0000-0003-0779-1477"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Thomas J Magliery","raw_affiliation_strings":["The Ohio State University, 100 W. 18th Ave, 43210, Columbus, OH, USA","The Ohio State University Columbus, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Ohio State University, 100 W. 18th Ave, 43210, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"The Ohio State University Columbus, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5055130575","display_name":"Christopher W. Bartlett","orcid":"https://orcid.org/0000-0001-7837-6348"},"institutions":[{"id":"https://openalex.org/I1314135232","display_name":"Nationwide Children's Hospital","ror":"https://ror.org/003rfsp33","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I1314135232"]},{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Christopher W Bartlett","raw_affiliation_strings":["Nationwide Children\u2019s Hospital, 575 Children\u2019s Crossroad, 43215, Columbus, OH, USA","The Ohio State University, 100 W. 18th Ave, 43210, Columbus, OH, USA","Nationwide Children\u2019s Hospital, Columbus, USA","The Ohio State University, Columbus, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Nationwide Children\u2019s Hospital, 575 Children\u2019s Crossroad, 43215, Columbus, OH, USA","institution_ids":["https://openalex.org/I1314135232"]},{"raw_affiliation_string":"The Ohio State University, 100 W. 18th Ave, 43210, Columbus, OH, USA","institution_ids":["https://openalex.org/I52357470"]},{"raw_affiliation_string":"Nationwide Children\u2019s Hospital, Columbus, USA","institution_ids":["https://openalex.org/I1314135232"]},{"raw_affiliation_string":"The Ohio State University, Columbus, USA","institution_ids":["https://openalex.org/I52357470"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5049477607"],"corresponding_institution_ids":["https://openalex.org/I1314135232","https://openalex.org/I52357470"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.427,"has_fulltext":true,"cited_by_count":7,"citation_normalized_percentile":{"value":0.63484409,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"15","issue":"1","first_page":"202","last_page":"202"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5640000104904175,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.5640000104904175,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.14069999754428864,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.05249999836087227,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.698360800743103},{"id":"https://openalex.org/keywords/crfs","display_name":"CRFS","score":0.6693590879440308},{"id":"https://openalex.org/keywords/conditional-random-field","display_name":"Conditional random field","score":0.6224680542945862},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.6125276684761047},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5596747994422913},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5567545294761658},{"id":"https://openalex.org/keywords/variety","display_name":"Variety (cybernetics)","score":0.5115919709205627},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.49068892002105713},{"id":"https://openalex.org/keywords/field","display_name":"Field (mathematics)","score":0.4728403687477112},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.45507800579071045},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.4530853033065796},{"id":"https://openalex.org/keywords/representation","display_name":"Representation (politics)","score":0.44339048862457275},{"id":"https://openalex.org/keywords/graphical-model","display_name":"Graphical model","score":0.44142845273017883},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.2595266103744507},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.23307892680168152},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.1802150309085846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16684198379516602}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.698360800743103},{"id":"https://openalex.org/C2775953691","wikidata":"https://www.wikidata.org/wiki/Q5013874","display_name":"CRFS","level":3,"score":0.6693590879440308},{"id":"https://openalex.org/C152565575","wikidata":"https://www.wikidata.org/wiki/Q1124538","display_name":"Conditional random field","level":2,"score":0.6224680542945862},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.6125276684761047},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5596747994422913},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5567545294761658},{"id":"https://openalex.org/C136197465","wikidata":"https://www.wikidata.org/wiki/Q1729295","display_name":"Variety (cybernetics)","level":2,"score":0.5115919709205627},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.49068892002105713},{"id":"https://openalex.org/C9652623","wikidata":"https://www.wikidata.org/wiki/Q190109","display_name":"Field (mathematics)","level":2,"score":0.4728403687477112},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.45507800579071045},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.4530853033065796},{"id":"https://openalex.org/C2776359362","wikidata":"https://www.wikidata.org/wiki/Q2145286","display_name":"Representation (politics)","level":3,"score":0.44339048862457275},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.44142845273017883},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.2595266103744507},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.23307892680168152},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.1802150309085846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16684198379516602},{"id":"https://openalex.org/C202444582","wikidata":"https://www.wikidata.org/wiki/Q837863","display_name":"Pure mathematics","level":1,"score":0.0},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.0},{"id":"https://openalex.org/C199539241","wikidata":"https://www.wikidata.org/wiki/Q7748","display_name":"Law","level":1,"score":0.0},{"id":"https://openalex.org/C94625758","wikidata":"https://www.wikidata.org/wiki/Q7163","display_name":"Politics","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C17744445","wikidata":"https://www.wikidata.org/wiki/Q36442","display_name":"Political science","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-15-202","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-202","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-202","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:25000815","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/25000815","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:3197066","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4227292","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-202","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-202","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-202","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G775009472","display_name":null,"funder_award_id":"1R15GM94732-1 A1","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320309374","display_name":"Ohio State University","ror":"https://ror.org/00rs6vg23"},{"id":"https://openalex.org/F4320309858","display_name":"Nationwide Children's Hospital","ror":"https://ror.org/003rfsp33"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2037900507.pdf","grobid_xml":"https://content.openalex.org/works/W2037900507.grobid-xml"},"referenced_works_count":34,"referenced_works":["https://openalex.org/W666325486","https://openalex.org/W1489773237","https://openalex.org/W1528012351","https://openalex.org/W1563940013","https://openalex.org/W1775412516","https://openalex.org/W1786047609","https://openalex.org/W1963515373","https://openalex.org/W2003833874","https://openalex.org/W2025920838","https://openalex.org/W2037647672","https://openalex.org/W2038100259","https://openalex.org/W2044950686","https://openalex.org/W2047046780","https://openalex.org/W2049053063","https://openalex.org/W2084629283","https://openalex.org/W2113372262","https://openalex.org/W2123229374","https://openalex.org/W2123540217","https://openalex.org/W2124144223","https://openalex.org/W2128886742","https://openalex.org/W2132435308","https://openalex.org/W2137886330","https://openalex.org/W2147880316","https://openalex.org/W2148329479","https://openalex.org/W2160180855","https://openalex.org/W2167915891","https://openalex.org/W2273974934","https://openalex.org/W2290195878","https://openalex.org/W2497099222","https://openalex.org/W2671739255","https://openalex.org/W2801222638","https://openalex.org/W2951801774","https://openalex.org/W4252075954","https://openalex.org/W4254681198"],"related_works":["https://openalex.org/W50079190","https://openalex.org/W2356597680","https://openalex.org/W182104056","https://openalex.org/W2111726165","https://openalex.org/W2011251309","https://openalex.org/W4302218341","https://openalex.org/W2950342388","https://openalex.org/W2088024891","https://openalex.org/W2129999749","https://openalex.org/W2006196395"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,27,49],"biological":[2,37,197,239],"world":[3],"is":[4,31,86,98],"replete":[5],"with":[6,204],"phenomena":[7],"that":[8,39,52,105,130,199,209],"appear":[9],"to":[10,44,81,113,119,124,136,145,202],"be":[11,117,180],"ideally":[12,69],"modeled":[13],"and":[14,121,149,155,171,212,220,243],"analyzed":[15],"by":[16,101,142],"one":[17],"archetypal":[18,147],"statistical":[19],"framework":[20],"-":[21],"the":[22,46,102,106,131,140,175,183,192,207],"Graphical":[23],"Probabilistic":[24],"Model":[25],"(GPM).":[26],"structure":[28],"of":[29,63,109,139,160,195],"GPMs":[30,53,68,97],"a":[32,60,84,88,114,158,163],"uniquely":[33],"good":[34],"match":[35],"for":[36,91,217,231],"problems":[38,198],"range":[40],"from":[41],"aligning":[42],"sequences":[43],"modeling":[45,203],"genome-to-phenome":[47],"relationship.":[48],"fundamental":[50],"questions":[51,72],"address":[54,146],"involve":[55],"making":[56],"decisions":[57],"based":[58],"on":[59,182],"complex":[61],"web":[62,108],"interacting":[64,110],"factors.":[65],"Unfortunately,":[66],"while":[67,228],"fit":[70],"many":[71,137],"in":[73,153,156,237],"biology,":[74],"they":[75],"are":[76,200,245],"not":[77,87],"an":[78,92,222],"easy":[79,118],"solution":[80,224],"apply.":[82],"Building":[83],"GPM":[85,161],"simple":[89],"task":[90],"end":[93],"user.":[94],"Moreover,":[95],"applying":[96],"also":[99,122],"impeded":[100],"insidious":[103],"fact":[104],"\"complex":[107],"factors\"":[111],"inherent":[112],"problem":[115],"might":[116],"define":[120],"intractable":[123],"compute":[125],"upon.":[126],"DISCUSSION:":[127],"We":[128],"propose":[129],"visualization":[132,211],"sciences":[133],"can":[134,179],"contribute":[135],"domains":[138],"bio-sciences,":[141],"developing":[143],"tools":[144],"representation":[148],"user":[150],"interaction":[151],"issues":[152],"GPMs,":[154],"particular":[157],"variety":[159],"called":[162,225],"Conditional":[164],"Random":[165],"Field(CRF).":[166],"CRFs":[167],"bring":[168],"additional":[169,172],"power,":[170],"complexity,":[173],"because":[174],"CRF":[176],"dependency":[177],"network":[178],"conditioned":[181],"query":[184],"data.":[185],"CONCLUSIONS:":[186],"In":[187],"this":[188],"manuscript":[189],"we":[190],"examine":[191],"shared":[193],"features":[194],"several":[196,238],"amenable":[201],"CRFs,":[205],"highlight":[206],"challenges":[208],"existing":[210],"visual":[213],"analytics":[214],"paradigms":[215],"induce":[216],"these":[218],"data,":[219],"document":[221],"experimental":[223],"StickWRLD":[226],"which,":[227],"leaving":[229],"room":[230],"improvement,":[232],"has":[233],"been":[234],"successfully":[235],"applied":[236],"research":[240],"projects.":[241],"Software":[242],"tutorials":[244],"available":[246],"at":[247],"http://www.stickwrld.org/.":[248]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2015,"cited_by_count":3}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}