{"id":"https://openalex.org/W1971013885","doi":"https://doi.org/10.1186/1471-2105-15-186","title":"Detecting overlapping protein complexes based on a generative model with functional and topological properties","display_name":"Detecting overlapping protein complexes based on a generative model with functional and topological properties","publication_year":2014,"publication_date":"2014-06-13","ids":{"openalex":"https://openalex.org/W1971013885","doi":"https://doi.org/10.1186/1471-2105-15-186","mag":"1971013885","pmid":"https://pubmed.ncbi.nlm.nih.gov/24928559"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-186","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-186","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-186","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-186","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5100447043","display_name":"Xiao-Fei Zhang","orcid":"https://orcid.org/0000-0002-5052-9725"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]},{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]},{"id":"https://openalex.org/I40963666","display_name":"Central China Normal University","ror":"https://ror.org/03x1jna21","country_code":"CN","type":"education","lineage":["https://openalex.org/I40963666"]}],"countries":["CN","HK"],"is_corresponding":false,"raw_author_name":"Xiao-Fei Zhang","raw_affiliation_strings":["Department of Electronic Engineering, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Xingang Road West, 510275, Guangzhou, China","School of Mathematics and Statistics, Central China Normal University, Luoyu Road, 430079, Wuhan, China","Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Guangzhou, China","School of Mathematics and Statistics, Central China Normal University, Wuhan, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]},{"raw_affiliation_string":"Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Xingang Road West, 510275, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Central China Normal University, Luoyu Road, 430079, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]},{"raw_affiliation_string":"Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"School of Mathematics and Statistics, Central China Normal University, Wuhan, China","institution_ids":["https://openalex.org/I40963666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102004642","display_name":"Dao\u2010Qing Dai","orcid":"https://orcid.org/0000-0003-4622-8492"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Dao-Qing Dai","raw_affiliation_strings":["Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Xingang Road West, 510275 Guangzhou, China. stsddq@mail.sysu.edu.cn","Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Guangzhou, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Xingang Road West, 510275 Guangzhou, China. stsddq@mail.sysu.edu.cn","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Guangzhou, China#TAB#","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030129372","display_name":"Le Ou-Yang","orcid":"https://orcid.org/0000-0003-4007-4568"},"institutions":[{"id":"https://openalex.org/I157773358","display_name":"Sun Yat-sen University","ror":"https://ror.org/0064kty71","country_code":"CN","type":"education","lineage":["https://openalex.org/I157773358"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Le Ou-Yang","raw_affiliation_strings":["Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Xingang Road West, 510275, Guangzhou, China","Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Guangzhou, China#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Xingang Road West, 510275, Guangzhou, China","institution_ids":["https://openalex.org/I157773358"]},{"raw_affiliation_string":"Intelligent Data Center and Department of Mathematics, Sun Yat-Sen University, Guangzhou, China#TAB#","institution_ids":["https://openalex.org/I157773358"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100644375","display_name":"Hong Yan","orcid":"https://orcid.org/0000-0001-9661-3095"},"institutions":[{"id":"https://openalex.org/I168719708","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23","country_code":"HK","type":"education","lineage":["https://openalex.org/I168719708"]}],"countries":["HK"],"is_corresponding":false,"raw_author_name":"Hong Yan","raw_affiliation_strings":["Department of Electronic Engineering, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","Department of Electronic Engineering. City University of Hong Kong, Tat Chee Avenue, Hong Kong, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Engineering, City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]},{"raw_affiliation_string":"Department of Electronic Engineering. City University of Hong Kong, Tat Chee Avenue, Hong Kong, China","institution_ids":["https://openalex.org/I168719708"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5102004642"],"corresponding_institution_ids":["https://openalex.org/I157773358"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.3398,"has_fulltext":true,"cited_by_count":47,"citation_normalized_percentile":{"value":0.88588336,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":94,"max":99},"biblio":{"volume":"15","issue":"1","first_page":"186","last_page":"186"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9617000222206116,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9617000222206116,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.02250000089406967,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.003000000026077032,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6576040983200073},{"id":"https://openalex.org/keywords/generative-grammar","display_name":"Generative grammar","score":0.5879855751991272},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.566591203212738},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.5019738674163818},{"id":"https://openalex.org/keywords/mechanism","display_name":"Mechanism (biology)","score":0.4964326024055481},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4933876097202301},{"id":"https://openalex.org/keywords/generative-model","display_name":"Generative model","score":0.437957763671875},{"id":"https://openalex.org/keywords/domain","display_name":"Domain (mathematical analysis)","score":0.43738412857055664},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4333752989768982},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.4033905863761902},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3676626682281494},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3665383756160736},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.36264997720718384},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.22646188735961914},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.16003426909446716},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.08753353357315063}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6576040983200073},{"id":"https://openalex.org/C39890363","wikidata":"https://www.wikidata.org/wiki/Q36108","display_name":"Generative grammar","level":2,"score":0.5879855751991272},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.566591203212738},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.5019738674163818},{"id":"https://openalex.org/C89611455","wikidata":"https://www.wikidata.org/wiki/Q6804646","display_name":"Mechanism (biology)","level":2,"score":0.4964326024055481},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4933876097202301},{"id":"https://openalex.org/C167966045","wikidata":"https://www.wikidata.org/wiki/Q5532625","display_name":"Generative model","level":3,"score":0.437957763671875},{"id":"https://openalex.org/C36503486","wikidata":"https://www.wikidata.org/wiki/Q11235244","display_name":"Domain (mathematical analysis)","level":2,"score":0.43738412857055664},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4333752989768982},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.4033905863761902},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3676626682281494},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3665383756160736},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.36264997720718384},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.22646188735961914},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.16003426909446716},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.08753353357315063},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D025941","descriptor_name":"Protein Interaction Mapping","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-15-186","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-186","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-186","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24928559","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24928559","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:4073817","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4073817","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.atira.dk:publications/b89d9393-09b5-4231-9a51-f83050d85383","is_oa":true,"landing_page_url":"https://hdl.handle.net/2031/b89d9393-09b5-4231-9a51-f83050d85383","pdf_url":null,"source":{"id":"https://openalex.org/S7407055387","display_name":"CityU Scholars","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Zhang, X-F, Dai, D-Q, Ou-Yang, L & Yan, H 2014, 'Detecting overlapping protein complexes based on a generative model with functional and topological properties', BMC Bioinformatics, vol. 15, no. 1, 186. https://doi.org/10.1186/1471-2105-15-186","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-186","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-186","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-186","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5,"id":"https://metadata.un.org/sdg/17","display_name":"Partnerships for the goals"}],"awards":[{"id":"https://openalex.org/G1281649363","display_name":null,"funder_award_id":"11171354","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G1441404857","display_name":null,"funder_award_id":"9610308","funder_id":"https://openalex.org/F4320309893","funder_display_name":"City University of Hong Kong"},{"id":"https://openalex.org/G3002491232","display_name":null,"funder_award_id":"20120171110016","funder_id":"https://openalex.org/F4320321106","funder_display_name":"Ministry of Education of the People's Republic of China"},{"id":"https://openalex.org/G325242283","display_name":"PPD: Digital Audio with Integrated E-Text Reading System","funder_award_id":"9610308","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G660828770","display_name":null,"funder_award_id":"61375033","funder_id":"https://openalex.org/F4320306076","funder_display_name":"National Science Foundation"},{"id":"https://openalex.org/G7128375257","display_name":null,"funder_award_id":"11171354","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G7604058285","display_name":null,"funder_award_id":"61375033","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G804469284","display_name":null,"funder_award_id":"S2013020012796","funder_id":"https://openalex.org/F4320321921","funder_display_name":"Natural Science Foundation of Guangdong Province"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320309893","display_name":"City University of Hong Kong","ror":"https://ror.org/03q8dnn23"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320321106","display_name":"Ministry of Education of the People's Republic of China","ror":"https://ror.org/01mv9t934"},{"id":"https://openalex.org/F4320321921","display_name":"Natural Science Foundation of Guangdong Province","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1971013885.pdf","grobid_xml":"https://content.openalex.org/works/W1971013885.grobid-xml"},"referenced_works_count":64,"referenced_works":["https://openalex.org/W97059505","https://openalex.org/W143174683","https://openalex.org/W1479807131","https://openalex.org/W1503398984","https://openalex.org/W1647729745","https://openalex.org/W1972675431","https://openalex.org/W1974515660","https://openalex.org/W1987363726","https://openalex.org/W1990144966","https://openalex.org/W1991008210","https://openalex.org/W1994321911","https://openalex.org/W1994505288","https://openalex.org/W2003516452","https://openalex.org/W2006124679","https://openalex.org/W2007448777","https://openalex.org/W2042832558","https://openalex.org/W2044719661","https://openalex.org/W2050583899","https://openalex.org/W2050721857","https://openalex.org/W2051365847","https://openalex.org/W2061615066","https://openalex.org/W2082565035","https://openalex.org/W2084619201","https://openalex.org/W2085658677","https://openalex.org/W2096180769","https://openalex.org/W2096578372","https://openalex.org/W2097795961","https://openalex.org/W2097865522","https://openalex.org/W2099364528","https://openalex.org/W2100935296","https://openalex.org/W2101580881","https://openalex.org/W2103017472","https://openalex.org/W2103460693","https://openalex.org/W2104042033","https://openalex.org/W2107067224","https://openalex.org/W2107107106","https://openalex.org/W2110620844","https://openalex.org/W2116117181","https://openalex.org/W2116216716","https://openalex.org/W2116447934","https://openalex.org/W2123318061","https://openalex.org/W2124166542","https://openalex.org/W2127048411","https://openalex.org/W2130687290","https://openalex.org/W2131323902","https://openalex.org/W2132667911","https://openalex.org/W2135029798","https://openalex.org/W2136850043","https://openalex.org/W2138003801","https://openalex.org/W2145713685","https://openalex.org/W2146659008","https://openalex.org/W2152495216","https://openalex.org/W2158266097","https://openalex.org/W2159034862","https://openalex.org/W2160313295","https://openalex.org/W2162891889","https://openalex.org/W2164928285","https://openalex.org/W2165232124","https://openalex.org/W2166344835","https://openalex.org/W2403079677","https://openalex.org/W2614098532","https://openalex.org/W3098674174","https://openalex.org/W3102641634","https://openalex.org/W3143596294"],"related_works":["https://openalex.org/W4365211920","https://openalex.org/W3014948380","https://openalex.org/W4380551139","https://openalex.org/W2280377497","https://openalex.org/W3174044702","https://openalex.org/W4238433571","https://openalex.org/W2967848559","https://openalex.org/W4283803360","https://openalex.org/W4317695495","https://openalex.org/W4387506531"],"abstract_inverted_index":{"BACKGROUND:":[0],"Identification":[1],"of":[2,12,19,40,54,73,98,121,134,140,144,168,217,231,255],"protein":[3,136,257],"complexes":[4,33,49,137,220,258],"can":[5,270],"help":[6],"us":[7],"get":[8],"a":[9,84,109,142,208,249],"better":[10],"understanding":[11],"cellular":[13],"mechanism.":[14],"With":[15],"the":[16,35,41,65,74,95,99,103,114,118,125,132,153,162,166,183,212,226,239,253,261,265],"increasing":[17],"availability":[18],"large-scale":[20],"protein-protein":[21],"interaction":[22,115],"(PPI)":[23],"data,":[24],"numerous":[25],"computational":[26],"approaches":[27,43],"have":[28,157],"been":[29],"proposed":[30],"to":[31,63,93,200,247],"detect":[32],"from":[34,273],"PPI":[36,100,154,262],"networks.":[37],"However,":[38],"most":[39],"current":[42],"do":[44],"not":[45,60],"consider":[46],"overlaps":[47,176],"among":[48,177],"or":[50,69],"functional":[51,104,119,126,163,184,229,266],"annotation":[52,159],"information":[53],"individual":[55],"proteins.":[56,122,235],"Therefore,":[57],"they":[58],"might":[59],"be":[61,248,271],"able":[62],"reflect":[64],"biological":[66],"reality":[67],"faithfully":[68],"make":[70],"full":[71],"use":[72],"available":[75],"domain-specific":[76],"knowledge.":[77],"RESULTS:":[78],"In":[79],"this":[80,243],"paper,":[81],"we":[82,130],"develop":[83],"Generative":[85],"Model":[86],"with":[87,149,175,198],"Functional":[88],"and":[89,102,117,127,156,228,233,264],"Topological":[90],"Properties":[91],"(GMFTP)":[92],"describe":[94],"generative":[96],"processes":[97],"network":[101,155,263],"profile.":[105,164,267],"The":[106,179,192,215,268],"model":[107],"provides":[108],"working":[110],"mechanism":[111],"for":[112,252],"capturing":[113],"structures":[116],"patterns":[120,160],"By":[123],"combining":[124],"topological":[128,227],"properties,":[129],"formulate":[131],"problem":[133],"identifying":[135],"as":[138],"that":[139,205],"detecting":[141,218],"group":[143],"proteins":[145],"which":[146],"frequently":[147],"interact":[148],"each":[150],"other":[151],"in":[152,161,242],"similar":[158],"Using":[165],"idea":[167],"link":[169],"communities,":[170],"our":[171],"method":[172],"naturally":[173],"deals":[174],"complexes.":[178],"benefits":[180],"brought":[181],"by":[182,188,224],"properties":[185],"are":[186],"demonstrated":[187,223],"real":[189],"data":[190],"analysis.":[191],"results":[193,240],"evaluated":[194],"using":[195,259],"four":[196],"criteria":[197],"respect":[199],"two":[201],"gold":[202],"standards":[203],"show":[204],"GMFTP":[206,245],"has":[207],"competitive":[209],"performance":[210],"over":[211],"state-of-the-art":[213],"approaches.":[214],"effectiveness":[216],"overlapping":[219,256],"is":[221],"also":[222],"analyzing":[225],"features":[230],"multi-":[232],"mono-group":[234],"CONCLUSIONS:":[236],"Based":[237],"on":[238],"obtained":[241],"study,":[244],"presents":[246],"powerful":[250],"approach":[251],"identification":[254],"both":[260],"software":[269],"downloaded":[272],"http://mail.sysu.edu.cn/home/stsddq@mail.sysu.edu.cn/dai/others/GMFTP.zip.":[274]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":3},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":6},{"year":2016,"cited_by_count":5},{"year":2015,"cited_by_count":7}],"updated_date":"2026-07-28T07:46:37.118299","created_date":"2025-10-10T00:00:00"}