{"id":"https://openalex.org/W2049053970","doi":"https://doi.org/10.1186/1471-2105-15-171","title":"Scoring docking conformations using predicted protein interfaces","display_name":"Scoring docking conformations using predicted protein interfaces","publication_year":2014,"publication_date":"2014-06-06","ids":{"openalex":"https://openalex.org/W2049053970","doi":"https://doi.org/10.1186/1471-2105-15-171","mag":"2049053970","pmid":"https://pubmed.ncbi.nlm.nih.gov/24906633"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-171","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002295568","display_name":"Reyhaneh Esmaielbeiki","orcid":null},"institutions":[{"id":"https://openalex.org/I40120149","display_name":"University of Oxford","ror":"https://ror.org/052gg0110","country_code":"GB","type":"education","lineage":["https://openalex.org/I40120149"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Reyhaneh Esmaielbeiki","raw_affiliation_strings":["Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK. Reyhaneh.Esmaielbeiki@dtc.ox.ac.uk","Department of Statistics, University of Oxford, Oxford\u00a0, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Statistics, University of Oxford, 1 South Parks Road, Oxford OX1 3TG, UK. Reyhaneh.Esmaielbeiki@dtc.ox.ac.uk","institution_ids":["https://openalex.org/I40120149"]},{"raw_affiliation_string":"Department of Statistics, University of Oxford, Oxford\u00a0, UK","institution_ids":["https://openalex.org/I40120149"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5005552930","display_name":"Jean\u2010Christophe Nebel","orcid":"https://orcid.org/0000-0003-1812-5269"},"institutions":[{"id":"https://openalex.org/I205051169","display_name":"Kingston University London","ror":"https://ror.org/05bbqza97","country_code":"GB","type":"education","lineage":["https://openalex.org/I205051169"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jean-Christophe Nebel","raw_affiliation_strings":["Faculty of Science, Engineering and Computing, Kingston University London, Kingston-Upon-Thames, Surrey, KT1 2EE, UK","Faculty of Science, Engineering and Computing, Kingston University London, Surrey, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Faculty of Science, Engineering and Computing, Kingston University London, Kingston-Upon-Thames, Surrey, KT1 2EE, UK","institution_ids":["https://openalex.org/I205051169"]},{"raw_affiliation_string":"Faculty of Science, Engineering and Computing, Kingston University London, Surrey, UK","institution_ids":["https://openalex.org/I205051169"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5002295568"],"corresponding_institution_ids":["https://openalex.org/I40120149"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.6553,"has_fulltext":true,"cited_by_count":18,"citation_normalized_percentile":{"value":0.67435118,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":88,"max":98},"biblio":{"volume":"15","issue":"1","first_page":"171","last_page":"171"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6057000160217285,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.6057000160217285,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.30959999561309814,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.026900000870227814,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/docking","display_name":"Docking (animal)","score":0.8396645784378052},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.724185585975647},{"id":"https://openalex.org/keywords/macromolecular-docking","display_name":"Macromolecular docking","score":0.6969057321548462},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6576032638549805},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.4875197112560272},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.44137436151504517},{"id":"https://openalex.org/keywords/protein\u2013ligand-docking","display_name":"Protein\u2013ligand docking","score":0.430624783039093},{"id":"https://openalex.org/keywords/protein\u2013protein-interaction","display_name":"Protein\u2013protein interaction","score":0.4134831726551056},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.38791200518608093},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.3846527338027954},{"id":"https://openalex.org/keywords/virtual-screening","display_name":"Virtual screening","score":0.38095664978027344},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3750618100166321},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.36454734206199646},{"id":"https://openalex.org/keywords/drug-discovery","display_name":"Drug discovery","score":0.35125046968460083},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.25005966424942017},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.21123087406158447},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.09189155697822571}],"concepts":[{"id":"https://openalex.org/C41685203","wikidata":"https://www.wikidata.org/wiki/Q1974042","display_name":"Docking (animal)","level":2,"score":0.8396645784378052},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.724185585975647},{"id":"https://openalex.org/C116887118","wikidata":"https://www.wikidata.org/wiki/Q836685","display_name":"Macromolecular docking","level":3,"score":0.6969057321548462},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6576032638549805},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.4875197112560272},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.44137436151504517},{"id":"https://openalex.org/C77319485","wikidata":"https://www.wikidata.org/wiki/Q7251520","display_name":"Protein\u2013ligand docking","level":4,"score":0.430624783039093},{"id":"https://openalex.org/C11804247","wikidata":"https://www.wikidata.org/wiki/Q896177","display_name":"Protein\u2013protein interaction","level":2,"score":0.4134831726551056},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.38791200518608093},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.3846527338027954},{"id":"https://openalex.org/C103697762","wikidata":"https://www.wikidata.org/wiki/Q4112105","display_name":"Virtual screening","level":3,"score":0.38095664978027344},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3750618100166321},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.36454734206199646},{"id":"https://openalex.org/C74187038","wikidata":"https://www.wikidata.org/wiki/Q1418791","display_name":"Drug discovery","level":2,"score":0.35125046968460083},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.25005966424942017},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.21123087406158447},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.09189155697822571},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.0},{"id":"https://openalex.org/C159110408","wikidata":"https://www.wikidata.org/wiki/Q121176","display_name":"Nursing","level":1,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011485","descriptor_name":"Protein Binding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D054730","descriptor_name":"Protein Interaction Domains and Motifs","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-15-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24906633","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24906633","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:eprints.kingston.ac.uk:28962","is_oa":false,"landing_page_url":"https://eprints.kingston.ac.uk/id/eprint/28962/1/Esmaielbeiki-R-28962.pdf","pdf_url":"https://eprints.kingston.ac.uk/id/eprint/28962/1/Esmaielbeiki-R-28962.pdf","source":{"id":"https://openalex.org/S4306400991","display_name":"Research Repository (Kingston University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801636071","host_organization_name":"Kingston Hospital NHS Trust","host_organization_lineage":["https://openalex.org/I2801636071"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4057934","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4057934","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-171","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-171","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-171","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6000000238418579,"id":"https://metadata.un.org/sdg/3"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2049053970.pdf","grobid_xml":"https://content.openalex.org/works/W2049053970.grobid-xml"},"referenced_works_count":87,"referenced_works":["https://openalex.org/W1521843029","https://openalex.org/W1573386462","https://openalex.org/W1965410913","https://openalex.org/W1969842170","https://openalex.org/W1977845138","https://openalex.org/W1985222378","https://openalex.org/W2000093524","https://openalex.org/W2008679330","https://openalex.org/W2009344101","https://openalex.org/W2010244302","https://openalex.org/W2010535661","https://openalex.org/W2012104865","https://openalex.org/W2014499409","https://openalex.org/W2014744153","https://openalex.org/W2018410079","https://openalex.org/W2021343666","https://openalex.org/W2021703339","https://openalex.org/W2021904716","https://openalex.org/W2024103356","https://openalex.org/W2027403155","https://openalex.org/W2028820256","https://openalex.org/W2036000659","https://openalex.org/W2039473152","https://openalex.org/W2043699100","https://openalex.org/W2046319392","https://openalex.org/W2057813163","https://openalex.org/W2064383522","https://openalex.org/W2066003542","https://openalex.org/W2067305633","https://openalex.org/W2067596330","https://openalex.org/W2072284383","https://openalex.org/W2074104861","https://openalex.org/W2080167197","https://openalex.org/W2083995470","https://openalex.org/W2090183113","https://openalex.org/W2091734240","https://openalex.org/W2094148990","https://openalex.org/W2095157453","https://openalex.org/W2096119514","https://openalex.org/W2098280758","https://openalex.org/W2100543317","https://openalex.org/W2102312699","https://openalex.org/W2103485392","https://openalex.org/W2104760790","https://openalex.org/W2105438341","https://openalex.org/W2106882534","https://openalex.org/W2107432340","https://openalex.org/W2109300715","https://openalex.org/W2109571828","https://openalex.org/W2110150937","https://openalex.org/W2110217865","https://openalex.org/W2110585060","https://openalex.org/W2111387452","https://openalex.org/W2112130467","https://openalex.org/W2112743424","https://openalex.org/W2115410056","https://openalex.org/W2117012297","https://openalex.org/W2119333768","https://openalex.org/W2126265982","https://openalex.org/W2126755078","https://openalex.org/W2129454543","https://openalex.org/W2129954993","https://openalex.org/W2130479394","https://openalex.org/W2131818083","https://openalex.org/W2131989561","https://openalex.org/W2132328103","https://openalex.org/W2133712572","https://openalex.org/W2136525667","https://openalex.org/W2136832587","https://openalex.org/W2137167381","https://openalex.org/W2138227733","https://openalex.org/W2141627824","https://openalex.org/W2143881057","https://openalex.org/W2147718842","https://openalex.org/W2148219066","https://openalex.org/W2151311229","https://openalex.org/W2152872596","https://openalex.org/W2153983456","https://openalex.org/W2154100560","https://openalex.org/W2154110104","https://openalex.org/W2155699197","https://openalex.org/W2158714788","https://openalex.org/W2162682281","https://openalex.org/W2163561348","https://openalex.org/W2163614321","https://openalex.org/W2171249995","https://openalex.org/W2915344963"],"related_works":["https://openalex.org/W2057846043","https://openalex.org/W2336040088","https://openalex.org/W2208175234","https://openalex.org/W2422751523","https://openalex.org/W2100241209","https://openalex.org/W2001586003","https://openalex.org/W2027065525","https://openalex.org/W3015273333","https://openalex.org/W2750247885","https://openalex.org/W1967954266"],"abstract_inverted_index":{"BACKGROUND:":[0],"Since":[1],"proteins":[2,234],"function":[3],"by":[4,61,89,97],"interacting":[5,237],"with":[6],"other":[7,134],"molecules,":[8],"analysis":[9],"of":[10,21,34,68,79,111,155,177,186,245],"protein-protein":[11],"interactions":[12,23,232],"is":[13,27,48,124,147],"essential":[14],"for":[15,30,51,66,219],"comprehending":[16],"biological":[17],"processes.":[18],"Whereas":[19],"understanding":[20],"atomic":[22],"within":[24],"a":[25,64,69,125,181],"complex":[26,72,246],"especially":[28],"useful":[29],"drug":[31],"design,":[32],"limitations":[33,201],"experimental":[35],"techniques":[36],"have":[37,198],"restricted":[38],"their":[39,236],"practical":[40],"use.":[41],"Despite":[42],"progress":[43,161],"in":[44,162],"docking":[45,86,156,163,208],"predictions,":[46],"there":[47,146],"still":[49,211],"room":[50],"improvement.":[52],"In":[53],"this":[54,59],"study,":[55],"we":[56,197],"contribute":[57],"to":[58,121,166,204,214],"topic":[60],"proposing":[62],"T-PioDock,":[63,196],"framework":[65],"detection":[67],"native-like":[70],"docked":[71],"3D":[73,83,187],"structure.":[74],"T-PioDock":[75,132,139,151],"supports":[76],"the":[77,98,141],"identification":[78,176],"near-native":[80,172,178],"conformations":[81,179],"from":[82,191],"models":[84,92,218],"that":[85,115,160],"software":[87,209],"produced":[88],"scoring":[90,136],"those":[91],"using":[93],"binding":[94],"interfaces":[95],"predicted":[96],"interface":[99,112,224],"predictor,":[100],"Template":[101],"based":[102],"Protein":[103],"Interface":[104],"Prediction":[105],"(T-PIP).":[106],"RESULTS:":[107],"First,":[108,207],"exhaustive":[109],"evaluation":[110],"predictors":[113,225],"demonstrates":[114],"T-PIP,":[116],"whose":[117],"predictions":[118],"are":[119,210],"customised":[120],"target":[122],"complexity,":[123],"state-of-the-art":[126,135],"method.":[127],"Second,":[128,222],"comparative":[129],"study":[130],"between":[131,150,233],"and":[133,153,235],"methods":[137,193],"establishes":[138],"as":[140,195],"best":[142],"performing":[143],"approach.":[144],"Moreover,":[145],"good":[148],"correlation":[149],"performance":[152],"quality":[154,244],"models,":[157],"which":[158,202,239],"suggests":[159],"will":[164,189],"lead":[165],"even":[167],"better":[168],"results":[169],"at":[170],"recognising":[171],"conformations.":[173,247],"CONCLUSION:":[174],"Accurate":[175],"remains":[180],"challenging":[182],"task.":[183],"Although":[184],"availability":[185],"complexes":[188],"benefit":[190],"template-based":[192],"such":[194],"identified":[199],"specific":[200],"need":[203],"be":[205],"addressed.":[206],"not":[212,227],"able":[213],"produce":[215],"native":[216],"like":[217],"every":[220],"target.":[221],"current":[223],"do":[226],"explicitly":[228],"consider":[229],"pairwise":[230],"residue":[231],"partners":[238],"leaves":[240],"ambiguity":[241],"when":[242],"assessing":[243]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-27T14:10:00.468798","created_date":"2025-10-10T00:00:00"}
