{"id":"https://openalex.org/W2033881810","doi":"https://doi.org/10.1186/1471-2105-15-101","title":"Improving clustering with metabolic pathway data","display_name":"Improving clustering with metabolic pathway data","publication_year":2014,"publication_date":"2014-04-10","ids":{"openalex":"https://openalex.org/W2033881810","doi":"https://doi.org/10.1186/1471-2105-15-101","mag":"2033881810","pmid":"https://pubmed.ncbi.nlm.nih.gov/24717120"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-15-101","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-101","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-101","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-101","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077266711","display_name":"Diego H. Milone","orcid":"https://orcid.org/0000-0003-2182-4351"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210087179","display_name":"Centro de Investigaci\u00f3n de M\u00e9todos Computacionales","ror":"https://ror.org/0041aya12","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I3121987637","https://openalex.org/I4210087179","https://openalex.org/I4210087694","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":true,"raw_author_name":"Diego H Milone","raw_affiliation_strings":["Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, (3000) Santa Fe, Argentina. d.milone@ieee.org","Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, Santa Fe, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, (3000) Santa Fe, Argentina. d.milone@ieee.org","institution_ids":["https://openalex.org/I4210087179"]},{"raw_affiliation_string":"Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, Santa Fe, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5091024901","display_name":"Georgina Stegmayer","orcid":"https://orcid.org/0000-0003-4459-4560"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210087179","display_name":"Centro de Investigaci\u00f3n de M\u00e9todos Computacionales","ror":"https://ror.org/0041aya12","country_code":"AR","type":"facility","lineage":["https://openalex.org/I151201029","https://openalex.org/I3121987637","https://openalex.org/I4210087179","https://openalex.org/I4210087694","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]}],"countries":["AR"],"is_corresponding":false,"raw_author_name":"Georgina Stegmayer","raw_affiliation_strings":["Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, (3000), Santa Fe, Argentina","Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, Santa Fe, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, (3000), Santa Fe, Argentina","institution_ids":["https://openalex.org/I4210087179"]},{"raw_affiliation_string":"Research Center for Signals, Systems and Computational Intelligence, sinc(i), FICH-UNL, CONICET, Ciudad Universitaria UNL, Santa Fe, Argentina","institution_ids":["https://openalex.org/I151201029"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027622307","display_name":"Mariana G. L\u00f3pez","orcid":"https://orcid.org/0000-0002-2216-9232"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210107052","display_name":"Instituto Nacional de Tecnologia","ror":"https://ror.org/012ang229","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210107052","https://openalex.org/I4210151455"]},{"id":"https://openalex.org/I4210153948","display_name":"National Agricultural Technology Institute","ror":"https://ror.org/04wm52x94","country_code":"AR","type":"government","lineage":["https://openalex.org/I4210153948"]}],"countries":["AR","BR"],"is_corresponding":false,"raw_author_name":"Mariana L\u00f3pez","raw_affiliation_strings":["Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, PO Box 25, B1712WAA, Castelar, Argentina","Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, Castelar, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, PO Box 25, B1712WAA, Castelar, Argentina","institution_ids":["https://openalex.org/I4210107052"]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, Castelar, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I4210153948"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054602423","display_name":"Laura Kamenetzky","orcid":"https://orcid.org/0000-0003-3778-4833"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210107052","display_name":"Instituto Nacional de Tecnologia","ror":"https://ror.org/012ang229","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210107052","https://openalex.org/I4210151455"]},{"id":"https://openalex.org/I4210153948","display_name":"National Agricultural Technology Institute","ror":"https://ror.org/04wm52x94","country_code":"AR","type":"government","lineage":["https://openalex.org/I4210153948"]}],"countries":["AR","BR"],"is_corresponding":false,"raw_author_name":"Laura Kamenetzky","raw_affiliation_strings":["Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, PO Box 25, B1712WAA, Castelar, Argentina","Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, Castelar, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, PO Box 25, B1712WAA, Castelar, Argentina","institution_ids":["https://openalex.org/I4210107052"]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, Castelar, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I4210153948"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5032238783","display_name":"Fernando Carrari","orcid":"https://orcid.org/0000-0003-0145-156X"},"institutions":[{"id":"https://openalex.org/I151201029","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59","country_code":"AR","type":"government","lineage":["https://openalex.org/I151201029","https://openalex.org/I4210123736","https://openalex.org/I4387155568"]},{"id":"https://openalex.org/I4210107052","display_name":"Instituto Nacional de Tecnologia","ror":"https://ror.org/012ang229","country_code":"BR","type":"government","lineage":["https://openalex.org/I4210107052","https://openalex.org/I4210151455"]},{"id":"https://openalex.org/I4210153948","display_name":"National Agricultural Technology Institute","ror":"https://ror.org/04wm52x94","country_code":"AR","type":"government","lineage":["https://openalex.org/I4210153948"]}],"countries":["AR","BR"],"is_corresponding":false,"raw_author_name":"Fernando Carrari","raw_affiliation_strings":["Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, PO Box 25, B1712WAA, Castelar, Argentina","Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, Castelar, Argentina"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, PO Box 25, B1712WAA, Castelar, Argentina","institution_ids":["https://openalex.org/I4210107052"]},{"raw_affiliation_string":"Instituto de Biotecnolog\u00eda, Instituto Nacional de Tecnolog\u00eda Agropecuaria (IB-INTA), CONICET, Castelar, Argentina","institution_ids":["https://openalex.org/I151201029","https://openalex.org/I4210153948"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5077266711"],"corresponding_institution_ids":["https://openalex.org/I151201029","https://openalex.org/I4210087179"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.9012,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.92086223,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"15","issue":"1","first_page":"101","last_page":"101"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.37139999866485596,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10320","display_name":"Neural Networks and Applications","score":0.37139999866485596,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.12300000339746475,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.10100000351667404,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.8749905824661255},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6581577062606812},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.634815514087677},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.596721887588501},{"id":"https://openalex.org/keywords/centroid","display_name":"Centroid","score":0.531877875328064},{"id":"https://openalex.org/keywords/a-priori-and-a-posteriori","display_name":"A priori and a posteriori","score":0.5249329209327698},{"id":"https://openalex.org/keywords/data-point","display_name":"Data point","score":0.43619608879089355},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.42144742608070374},{"id":"https://openalex.org/keywords/clustering-high-dimensional-data","display_name":"Clustering high-dimensional data","score":0.413411945104599},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.3584381639957428},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.29281705617904663},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14862367510795593}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.8749905824661255},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6581577062606812},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.634815514087677},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.596721887588501},{"id":"https://openalex.org/C146599234","wikidata":"https://www.wikidata.org/wiki/Q511093","display_name":"Centroid","level":2,"score":0.531877875328064},{"id":"https://openalex.org/C75553542","wikidata":"https://www.wikidata.org/wiki/Q178161","display_name":"A priori and a posteriori","level":2,"score":0.5249329209327698},{"id":"https://openalex.org/C21080849","wikidata":"https://www.wikidata.org/wiki/Q13611879","display_name":"Data point","level":2,"score":0.43619608879089355},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.42144742608070374},{"id":"https://openalex.org/C184509293","wikidata":"https://www.wikidata.org/wiki/Q5136711","display_name":"Clustering high-dimensional data","level":3,"score":0.413411945104599},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.3584381639957428},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.29281705617904663},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14862367510795593},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011381","descriptor_name":"Programming Languages","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D017360","descriptor_name":"Arabidopsis","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018551","descriptor_name":"Solanum lycopersicum","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018551","descriptor_name":"Solanum lycopersicum","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D018551","descriptor_name":"Solanum lycopersicum","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-15-101","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-101","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-101","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24717120","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24717120","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2992318","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4002909","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:americanae.aecid.es:3099295","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3099295","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 15 : 101 (2014)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:americanae.aecid.es:3920633","is_oa":true,"landing_page_url":"http://americanae.aecid.es/americanae/es/registros/registro.do?tipoRegistro=MTD&idBib=3920633","pdf_url":null,"source":{"id":"https://openalex.org/S4306400786","display_name":"Americanae (AECID Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:localhost:20.500.12123/4292","is_oa":true,"landing_page_url":"https://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-15-101","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 15 : 101 (2014)","raw_type":"http://purl.org/coar/resource_type/c_6501"},{"id":"pmh:oai:ri.conicet.gov.ar:11336/31795","is_oa":true,"landing_page_url":"http://hdl.handle.net/11336/31795","pdf_url":null,"source":{"id":"https://openalex.org/S4306402641","display_name":"LA Referencia (Red Federada de Repositorios Institucionales de Publicaciones Cient\u00edficas)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4383465926","host_organization_name":"LA Referencia","host_organization_lineage":["https://openalex.org/I4383465926"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-sa","license_id":"https://openalex.org/licenses/cc-by-nc-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"reponame:CONICET Digital (CONICET)","raw_type":"http://purl.org/coar/resource_type/c_6501"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-15-101","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-15-101","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-15-101","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1690295768","display_name":null,"funder_award_id":"PIP 2013?","funder_id":"https://openalex.org/F4320321594","funder_display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas"},{"id":"https://openalex.org/G592866923","display_name":null,"funder_award_id":"CAI+D 2011","funder_id":"https://openalex.org/F4320321594","funder_display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas"},{"id":"https://openalex.org/G841842749","display_name":null,"funder_award_id":"2011-","funder_id":"https://openalex.org/F4320321594","funder_display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas"}],"funders":[{"id":"https://openalex.org/F4320321594","display_name":"Consejo Nacional de Investigaciones Cient\u00edficas y T\u00e9cnicas","ror":"https://ror.org/03cqe8w59"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2033881810.pdf","grobid_xml":"https://content.openalex.org/works/W2033881810.grobid-xml"},"referenced_works_count":50,"referenced_works":["https://openalex.org/W85881369","https://openalex.org/W1513910506","https://openalex.org/W1561625715","https://openalex.org/W1565399663","https://openalex.org/W1679913846","https://openalex.org/W1788898868","https://openalex.org/W1963732909","https://openalex.org/W1974304567","https://openalex.org/W1985695385","https://openalex.org/W1995869668","https://openalex.org/W2009791743","https://openalex.org/W2021105899","https://openalex.org/W2022397039","https://openalex.org/W2042007306","https://openalex.org/W2051224630","https://openalex.org/W2055867223","https://openalex.org/W2071949631","https://openalex.org/W2079609797","https://openalex.org/W2079810998","https://openalex.org/W2094129019","https://openalex.org/W2098234936","https://openalex.org/W2100374693","https://openalex.org/W2103017472","https://openalex.org/W2109047523","https://openalex.org/W2122260233","https://openalex.org/W2124798265","https://openalex.org/W2130410032","https://openalex.org/W2131776976","https://openalex.org/W2132680932","https://openalex.org/W2133098435","https://openalex.org/W2133129825","https://openalex.org/W2135187880","https://openalex.org/W2142046354","https://openalex.org/W2142354265","https://openalex.org/W2144317357","https://openalex.org/W2146609409","https://openalex.org/W2146914454","https://openalex.org/W2150394469","https://openalex.org/W2153020710","https://openalex.org/W2159482845","https://openalex.org/W2159767718","https://openalex.org/W2161444669","https://openalex.org/W2162972849","https://openalex.org/W2170746618","https://openalex.org/W2569325085","https://openalex.org/W2609196176","https://openalex.org/W2612526924","https://openalex.org/W4244022615","https://openalex.org/W4285719527","https://openalex.org/W4294216483"],"related_works":["https://openalex.org/W2330313492","https://openalex.org/W2533990316","https://openalex.org/W2952300832","https://openalex.org/W2963069872","https://openalex.org/W2160539666","https://openalex.org/W3143121722","https://openalex.org/W2506153445","https://openalex.org/W2541308381","https://openalex.org/W2016708865","https://openalex.org/W4297688808"],"abstract_inverted_index":{"BACKGROUND:":[0],"It":[1,270],"is":[2,46,105,271,290],"a":[3,14,50,138,195,293],"common":[4],"practice":[5],"in":[6,88,217,227,233],"bioinformatics":[7],"to":[8,21,32,59,69,72,90,185,229,273],"validate":[9],"each":[10],"group":[11],"returned":[12],"by":[13,79,191],"clustering":[15,75,104,188,225],"algorithm":[16,102,289],"through":[17],"manual":[18],"analysis,":[19],"according":[20,58],"a-priori":[22],"biological":[23,40,77,93,110,203,252,260],"knowledge.":[24],"This":[25],"procedure":[26],"helps":[27],"finding":[28],"functionally":[29],"related":[30],"patterns":[31],"propose":[33],"hypotheses":[34],"for":[35,103,222],"their":[36,60,286],"behavior":[37],"and":[38,134,169,174,220,300],"the":[39,74,84,92,96,109,114,118,127,155,187,202,206,218,223,236,244,259,263,267,281,301,305],"processes":[41],"involved.":[42],"Therefore,":[43],"this":[44,124,276,308],"knowledge":[45,82],"used":[47,184],"only":[48],"as":[49,292],"second":[51],"step,":[52],"after":[53],"data":[54,78,115,132,165,179,302],"are":[55,120,310],"just":[56],"clustered":[57],"expression":[61],"patterns.":[62],"Thus,":[63],"it":[64],"could":[65],"be":[66,70],"very":[67],"useful":[68],"able":[71],"improve":[73],"of":[76,95,113,129,167,205,212,239,243,262,307],"incorporating":[80],"prior":[81],"into":[83,200],"cluster":[85],"formation":[86],"itself,":[87],"order":[89],"enhance":[91],"value":[94,261],"clusters.":[97],"RESULTS:":[98],"A":[99],"novel":[100],"training":[101,125,153,159,255],"presented,":[106],"which":[107,283],"evaluates":[108],"internal":[111],"connections":[112],"points":[116,133],"while":[117],"clusters":[119,207,245,264],"being":[121],"formed.":[122],"Within":[123],"algorithm,":[126],"calculation":[128],"distances":[130],"among":[131],"neurons":[135],"centroids":[136],"includes":[137],"new":[139,196],"term":[140],"based":[141],"on":[142],"information":[143,253],"from":[144,171,235],"well-known":[145],"metabolic":[146],"pathways.":[147],"The":[148,210,297],"standard":[149,230],"self-organizing":[150],"map":[151],"(SOM)":[152],"versus":[154],"biologically-inspired":[156],"SOM":[157,231],"(bSOM)":[158],"were":[160,183],"tested":[161],"with":[162,247,266],"two":[163],"real":[164],"sets":[166,303],"transcripts":[168],"metabolites":[170],"Solanum":[172],"lycopersicum":[173],"Arabidopsis":[175],"thaliana":[176],"species.":[177],"Classical":[178],"mining":[180],"validation":[181],"measures":[182],"evaluate":[186],"solutions":[189],"obtained":[190,246],"both":[192],"algorithms.":[193],"Moreover,":[194],"measure":[197],"that":[198,250,275],"takes":[199],"account":[201],"connectivity":[204],"was":[208],"applied.":[209],"results":[211,306],"bSOM":[213,248],"show":[214],"important":[215],"improvements":[216],"convergence":[219],"performance":[221],"proposed":[224,268],"method":[226],"comparison":[228],"training,":[232],"particular,":[234],"application":[237],"point":[238],"view.":[240],"CONCLUSIONS:":[241],"Analyses":[242],"indicate":[249],"including":[251],"during":[254],"can":[256,284],"certainly":[257],"increase":[258],"found":[265],"method.":[269],"worth":[272],"highlight":[274],"fact":[277],"has":[278],"effectively":[279],"improved":[280],"results,":[282],"simplify":[285],"further":[287],"analysis.The":[288],"available":[291,311],"web-demo":[294],"at":[295,312],"http://fich.unl.edu.ar/sinc/web-demo/bsom-lite/.":[296],"source":[298],"code":[299],"supporting":[304],"article":[309],"http://sourceforge.net/projects/sourcesinc/files/bsom.":[313]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":4}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
