{"id":"https://openalex.org/W2072841531","doi":"https://doi.org/10.1186/1471-2105-14-s7-s6","title":"GAM-NGS: genomic assemblies merger for next generation sequencing","display_name":"GAM-NGS: genomic assemblies merger for next generation sequencing","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2072841531","doi":"https://doi.org/10.1186/1471-2105-14-s7-s6","mag":"2072841531","pmid":"https://pubmed.ncbi.nlm.nih.gov/23815503"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s7-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S6","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5047480681","display_name":"Riccardo Vicedomini","orcid":"https://orcid.org/0000-0002-7706-0998"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Riccardo Vicedomini","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Udine, 33100 Udine, Italy. rvicedomini@appliedgenomics.org","Department of Mathematics and Computer Science, University of Udine, 33100, Udine, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Udine, 33100 Udine, Italy. rvicedomini@appliedgenomics.org","institution_ids":["https://openalex.org/I129043915"]},{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Udine, 33100, Udine, Italy","institution_ids":["https://openalex.org/I129043915"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5006807738","display_name":"Francesco Vezzi","orcid":"https://orcid.org/0000-0002-0243-0018"},"institutions":[{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Francesco Vezzi","raw_affiliation_strings":["KTH Royal Institute of Technology, Science for Life Laboratory, School of Computer Science and Communication, 17121, Solna, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology, Science for Life Laboratory, School of Computer Science and Communication, 17121, Solna, Sweden","institution_ids":["https://openalex.org/I86987016","https://openalex.org/I2800139495"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025719945","display_name":"Simone Scalabrin","orcid":"https://orcid.org/0000-0001-8686-8385"},"institutions":[{"id":"https://openalex.org/I4210155277","display_name":"Istituto di Genomica Applicata","ror":"https://ror.org/057w9fs93","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155277"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Simone Scalabrin","raw_affiliation_strings":["IGA, Institute of Applied Genomics, 33100, Udine, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IGA, Institute of Applied Genomics, 33100, Udine, Italy","institution_ids":["https://openalex.org/I4210155277"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5062941325","display_name":"Lars Arvestad","orcid":"https://orcid.org/0000-0001-5341-1733"},"institutions":[{"id":"https://openalex.org/I2800139495","display_name":"Science for Life Laboratory","ror":"https://ror.org/04ev03g22","country_code":"SE","type":"facility","lineage":["https://openalex.org/I2800139495"]},{"id":"https://openalex.org/I4210103991","display_name":"Swedish e-Science Research Centre","ror":"https://ror.org/01e59yk92","country_code":"SE","type":"facility","lineage":["https://openalex.org/I4210103991"]},{"id":"https://openalex.org/I86987016","display_name":"KTH Royal Institute of Technology","ror":"https://ror.org/026vcq606","country_code":"SE","type":"education","lineage":["https://openalex.org/I86987016"]}],"countries":["SE"],"is_corresponding":false,"raw_author_name":"Lars Arvestad","raw_affiliation_strings":["KTH Royal Institute of Technology, Science for Life Laboratory, School of Computer Science and Communication, 17121, Solna, Sweden","Swedish e-Science Research Centre, Dept. of Computer Science and Numerical Analysis, Stockholm University, 17121, Solna, Sweden"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"KTH Royal Institute of Technology, Science for Life Laboratory, School of Computer Science and Communication, 17121, Solna, Sweden","institution_ids":["https://openalex.org/I86987016","https://openalex.org/I2800139495"]},{"raw_affiliation_string":"Swedish e-Science Research Centre, Dept. of Computer Science and Numerical Analysis, Stockholm University, 17121, Solna, Sweden","institution_ids":["https://openalex.org/I4210103991"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5042115100","display_name":"Alberto Policriti","orcid":"https://orcid.org/0000-0001-8502-5896"},"institutions":[{"id":"https://openalex.org/I129043915","display_name":"University of Udine","ror":"https://ror.org/05ht0mh31","country_code":"IT","type":"education","lineage":["https://openalex.org/I129043915"]},{"id":"https://openalex.org/I4210155277","display_name":"Istituto di Genomica Applicata","ror":"https://ror.org/057w9fs93","country_code":"IT","type":"facility","lineage":["https://openalex.org/I4210155277"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Policriti","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Udine, 33100, Udine, Italy","IGA, Institute of Applied Genomics, 33100, Udine, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Udine, 33100, Udine, Italy","institution_ids":["https://openalex.org/I129043915"]},{"raw_affiliation_string":"IGA, Institute of Applied Genomics, 33100, Udine, Italy","institution_ids":["https://openalex.org/I4210155277"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5047480681"],"corresponding_institution_ids":["https://openalex.org/I129043915"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":6.4898,"has_fulltext":true,"cited_by_count":96,"citation_normalized_percentile":{"value":0.97479416,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"14","issue":"S7","first_page":"S6","last_page":"S6"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9157999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9157999753952026,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.05550000071525574,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.0017000000225380063,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/merge","display_name":"Merge (version control)","score":0.6509146690368652},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6051814556121826},{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.5477893948554993},{"id":"https://openalex.org/keywords/sequence-assembly","display_name":"Sequence assembly","score":0.46819671988487244},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.45922815799713135},{"id":"https://openalex.org/keywords/correctness","display_name":"Correctness","score":0.44465968012809753},{"id":"https://openalex.org/keywords/contiguity","display_name":"Contiguity","score":0.4368937313556671},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4050600528717041},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.31702184677124023},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.26999425888061523},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.217512309551239},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.1618497371673584},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1473434865474701},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.09122559428215027}],"concepts":[{"id":"https://openalex.org/C197129107","wikidata":"https://www.wikidata.org/wiki/Q1921621","display_name":"Merge (version control)","level":2,"score":0.6509146690368652},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6051814556121826},{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.5477893948554993},{"id":"https://openalex.org/C18949551","wikidata":"https://www.wikidata.org/wiki/Q740578","display_name":"Sequence assembly","level":5,"score":0.46819671988487244},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.45922815799713135},{"id":"https://openalex.org/C55439883","wikidata":"https://www.wikidata.org/wiki/Q360812","display_name":"Correctness","level":2,"score":0.44465968012809753},{"id":"https://openalex.org/C68767595","wikidata":"https://www.wikidata.org/wiki/Q1677999","display_name":"Contiguity","level":2,"score":0.4368937313556671},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4050600528717041},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.31702184677124023},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.26999425888061523},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.217512309551239},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.1618497371673584},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1473434865474701},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.09122559428215027},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002875","descriptor_name":"Chromosomes","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012242","descriptor_name":"Rhodobacter sphaeroides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012242","descriptor_name":"Rhodobacter sphaeroides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012242","descriptor_name":"Rhodobacter sphaeroides","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D013211","descriptor_name":"Staphylococcus aureus","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016680","descriptor_name":"Genome, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-s7-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23815503","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23815503","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:HAL:hal-03465165v1","is_oa":false,"landing_page_url":"https://hal.science/hal-03465165","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2013, 14 (S7), &#x27E8;10.1186/1471-2105-14-S7-S6&#x27E9;","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:air.uniud.it:11390/1029950","is_oa":true,"landing_page_url":"http://hdl.handle.net/11390/1029950","pdf_url":null,"source":{"id":"https://openalex.org/S4306401163","display_name":"Institutional Research Information System (University of Udine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I129043915","host_organization_name":"University of Udine","host_organization_lineage":["https://openalex.org/I129043915"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-nc-nd","license_id":"https://openalex.org/licenses/cc-by-nc-nd","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:europepmc.org:2631513","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3633056","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s7-s6","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s6","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S6","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.41999998688697815,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322327","display_name":"Knut och Alice Wallenbergs Stiftelse","ror":"https://ror.org/004hzzk67"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2072841531.pdf","grobid_xml":"https://content.openalex.org/works/W2072841531.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1966822396","https://openalex.org/W2011632873","https://openalex.org/W2041926007","https://openalex.org/W2044540291","https://openalex.org/W2061338306","https://openalex.org/W2068543706","https://openalex.org/W2078331392","https://openalex.org/W2103441770","https://openalex.org/W2104775949","https://openalex.org/W2114765236","https://openalex.org/W2118382442","https://openalex.org/W2127768708","https://openalex.org/W2132787769","https://openalex.org/W2135361281","https://openalex.org/W2154203776","https://openalex.org/W2157068560","https://openalex.org/W2158682869","https://openalex.org/W2159946869","https://openalex.org/W2160718893","https://openalex.org/W2161546116","https://openalex.org/W2616754551","https://openalex.org/W2912500497"],"related_works":["https://openalex.org/W2089480001","https://openalex.org/W3167837387","https://openalex.org/W2885619582","https://openalex.org/W54719527","https://openalex.org/W4250462852","https://openalex.org/W2944010518","https://openalex.org/W2993223466","https://openalex.org/W2105191441","https://openalex.org/W2589404674","https://openalex.org/W3110957961"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,218,316],"recent":[2,43],"years":[3],"more":[4,92,274,303],"than":[5,54,215,304],"20":[6,305],"assemblers":[7,31,49,307],"have":[8],"been":[9,158],"proposed":[10],"to":[11,28,39,51,88,96,166,183,191,207,220,242,260,270,278,311,344],"tackle":[12],"the":[13,35,112,116,140,254,313,338],"hard":[14,310],"task":[15],"of":[16,101,111,142,151,173,179,197,256],"assembling":[17,24],"NGS":[18],"data.":[19],"A":[20],"common":[21],"heuristic":[22],"when":[23],"a":[25,130,174,188,202,249,267,321,328],"genome":[26],"is":[27,87,136,187,200,252,266,309,341],"use":[29],"several":[30],"and":[32,99,127,164,245,281,292,336],"then":[33],"select":[34,312],"best":[36,314],"assembly":[37,168,236,290],"according":[38],"some":[40,48],"criteria.":[41],"However,":[42],"results":[44],"clearly":[45],"show":[46,184],"that":[47,146,323,340],"lead":[50],"better":[52],"statistics":[53],"others":[55],"on":[56,62,66,107,160,287],"specific":[57],"regions":[58,64,110],"but":[59],"are":[60,122],"outperformed":[61],"other":[63,167,235],"or":[65,91,273],"different":[67,162],"evaluation":[68],"measures.":[69],"To":[70],"limit":[71],"these":[72],"problems":[73],"we":[74,319],"developed":[75],"GAM-NGS":[76,103,156,186,199,224,265],"(Genomic":[77],"Assemblies":[78],"Merger":[79],"for":[80,177],"Next":[81],"Generation":[82],"Sequencing),":[83],"whose":[84],"primary":[85],"goal":[86],"merge":[89,208,271],"two":[90,113,272],"assemblies":[93,114,209,247,275,325],"in":[94,129,276],"order":[95,219,277],"enhance":[97,261],"contiguity":[98,280],"correctness":[100],"both.":[102],"does":[104],"not":[105],"rely":[106],"global":[108,226],"alignment:":[109],"representing":[115],"same":[117],"genomic":[118],"locus":[119],"(called":[120],"blocks)":[121],"identified":[123],"through":[124],"reads'":[125],"alignments":[126],"stored":[128],"weighted":[131,144],"graph.":[132],"The":[133,171,240],"merging":[134,334],"phase":[135],"carried":[137],"out":[138],"with":[139,298],"help":[141],"this":[143,317],"graph":[145],"allows":[147],"an":[148,193],"optimal":[149],"resolution":[150],"local":[152],"problematic":[153],"regions.":[154],"RESULTS:":[155],"has":[157],"tested":[159],"six":[161],"datasets":[163],"compared":[165],"reconciliation":[169,237],"tools.":[170,217,238],"availability":[172],"reference":[175],"sequence":[176],"three":[178],"them":[180,335],"allowed":[181],"us":[182],"how":[185],"tool":[189,205,268,322],"able":[190,206,259,269],"output":[192],"improved":[194],"reliable":[195,246],"set":[196],"sequences.":[198],"also":[201],"very":[203],"efficient":[204],"using":[210,248],"substantially":[211],"less":[212],"computational":[213],"resources":[214],"comparable":[216],"achieve":[221],"such":[222],"goals,":[223],"avoids":[225],"alignment":[227],"between":[228],"contigs,":[229],"making":[230],"its":[231,295],"strategy":[232],"unique":[233],"among":[234],"CONCLUSIONS:":[239],"difficulty":[241],"obtain":[243],"correct":[244],"single":[250],"assembler":[251],"forcing":[253],"introduction":[255],"new":[257],"algorithms":[258],"de":[262],"novo":[263],"assemblies.":[264],"improve":[279],"correctness.":[282],"It":[283],"can":[284],"be":[285,345],"used":[286],"all":[288],"NGS-based":[289],"projects":[291],"it":[293,308],"shows":[294],"full":[296],"potential":[297],"multi-library":[299],"Illumina-based":[300],"projects.":[301],"With":[302],"available":[306],"tool.":[315],"context":[318],"propose":[320],"improves":[324],"(and,":[326],"as":[327],"by-product,":[329],"perhaps":[330],"even":[331],"assemblers)":[332],"by":[333],"selecting":[337],"generating":[339],"most":[342],"likely":[343],"correct.":[346]},"counts_by_year":[{"year":2026,"cited_by_count":5},{"year":2025,"cited_by_count":4},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":4},{"year":2021,"cited_by_count":8},{"year":2020,"cited_by_count":7},{"year":2019,"cited_by_count":6},{"year":2018,"cited_by_count":5},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":19},{"year":2014,"cited_by_count":10},{"year":2013,"cited_by_count":4}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
