{"id":"https://openalex.org/W2104568271","doi":"https://doi.org/10.1186/1471-2105-14-s7-s5","title":"VIRGO: visualization of A-to-I RNA editing sites in genomic sequences","display_name":"VIRGO: visualization of A-to-I RNA editing sites in genomic sequences","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2104568271","doi":"https://doi.org/10.1186/1471-2105-14-s7-s5","mag":"2104568271","pmid":"https://pubmed.ncbi.nlm.nih.gov/23815474"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s7-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5031773625","display_name":"Rosario Distefano","orcid":"https://orcid.org/0000-0001-7241-7751"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rosario Distefano","raw_affiliation_strings":["Department of Mathematics and Computer Science - University of Catania, Catania, Italy","Dept. of Mathematics & Computer Science - University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science - University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"Dept. of Mathematics & Computer Science - University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5061759967","display_name":"Giovanni Nigita","orcid":"https://orcid.org/0000-0001-8880-4334"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Giovanni Nigita","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Catania, Italy","Dept. of Mathematics & Computer Science - University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"Dept. of Mathematics & Computer Science - University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074619457","display_name":"Valentina Macca","orcid":null},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valentina Macca","raw_affiliation_strings":["Department of Mathematics and Computer Science, University of Catania, Catania, Italy","Dept. of Mathematics & Computer Science - University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Computer Science, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]},{"raw_affiliation_string":"Dept. of Mathematics & Computer Science - University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5089682157","display_name":"Alessandro Lagan\u00e0","orcid":"https://orcid.org/0000-0003-1134-0564"},"institutions":[{"id":"https://openalex.org/I52357470","display_name":"The Ohio State University","ror":"https://ror.org/00rs6vg23","country_code":"US","type":"education","lineage":["https://openalex.org/I52357470"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Alessandro Lagan\u00e0","raw_affiliation_strings":["Department of Molecular Virology, Immunology and Medical Genetics Comprehensive Cancer Center - The Ohio State University, Ohio, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Molecular Virology, Immunology and Medical Genetics Comprehensive Cancer Center - The Ohio State University, Ohio, USA","institution_ids":["https://openalex.org/I52357470"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002057785","display_name":"Rosalba Giugno","orcid":"https://orcid.org/0000-0001-9843-7638"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Rosalba Giugno","raw_affiliation_strings":["Department of Clinical and Molecular Biomedicine, University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical and Molecular Biomedicine, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057481978","display_name":"Alfredo Pulvirenti","orcid":"https://orcid.org/0000-0002-9764-0295"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Alfredo Pulvirenti","raw_affiliation_strings":["Department of Clinical and Molecular Biomedicine, University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical and Molecular Biomedicine, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000272110","display_name":"Alfredo Ferro","orcid":"https://orcid.org/0000-0002-9431-5788"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Ferro","raw_affiliation_strings":["Department of Clinical and Molecular Biomedicine, University of Catania, Catania, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Clinical and Molecular Biomedicine, University of Catania, Catania, Italy","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5057481978"],"corresponding_institution_ids":["https://openalex.org/I39063666"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7481,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.72165725,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"14","issue":"S7","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12610","display_name":"RNA regulation and disease","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.0010999999940395355,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.0006000000284984708,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome-browser","display_name":"Genome browser","score":0.6128211617469788},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5876341462135315},{"id":"https://openalex.org/keywords/rna-editing","display_name":"RNA editing","score":0.5821720957756042},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5087812542915344},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.44637709856033325},{"id":"https://openalex.org/keywords/guide-rna","display_name":"Guide RNA","score":0.4325907230377197},{"id":"https://openalex.org/keywords/genomics","display_name":"Genomics","score":0.4066808819770813},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4056549668312073},{"id":"https://openalex.org/keywords/genome-editing","display_name":"Genome editing","score":0.4023646116256714},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.36015868186950684},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.3209719955921173},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.3204793632030487},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.31982696056365967},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2774618864059448}],"concepts":[{"id":"https://openalex.org/C2781148417","wikidata":"https://www.wikidata.org/wiki/Q5533486","display_name":"Genome browser","level":5,"score":0.6128211617469788},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5876341462135315},{"id":"https://openalex.org/C21786251","wikidata":"https://www.wikidata.org/wiki/Q14886350","display_name":"RNA editing","level":4,"score":0.5821720957756042},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5087812542915344},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.44637709856033325},{"id":"https://openalex.org/C97702854","wikidata":"https://www.wikidata.org/wiki/Q4039747","display_name":"Guide RNA","level":5,"score":0.4325907230377197},{"id":"https://openalex.org/C189206191","wikidata":"https://www.wikidata.org/wiki/Q222046","display_name":"Genomics","level":4,"score":0.4066808819770813},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4056549668312073},{"id":"https://openalex.org/C144501496","wikidata":"https://www.wikidata.org/wiki/Q5533489","display_name":"Genome editing","level":4,"score":0.4023646116256714},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.36015868186950684},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.3209719955921173},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.3204793632030487},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.31982696056365967},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2774618864059448}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017393","descriptor_name":"RNA Editing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020224","descriptor_name":"Expressed Sequence Tags","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-14-s7-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23815474","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23815474","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2823700","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3837470","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s7-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104568271.pdf","grobid_xml":"https://content.openalex.org/works/W2104568271.grobid-xml"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W1547213195","https://openalex.org/W1968302884","https://openalex.org/W1977627012","https://openalex.org/W1987602399","https://openalex.org/W1990478192","https://openalex.org/W1996713482","https://openalex.org/W2003451384","https://openalex.org/W2007558709","https://openalex.org/W2022192230","https://openalex.org/W2028423947","https://openalex.org/W2033385373","https://openalex.org/W2034869545","https://openalex.org/W2041676007","https://openalex.org/W2050345155","https://openalex.org/W2056573404","https://openalex.org/W2062714021","https://openalex.org/W2063538505","https://openalex.org/W2069084578","https://openalex.org/W2071112983","https://openalex.org/W2072016877","https://openalex.org/W2076961967","https://openalex.org/W2092910058","https://openalex.org/W2100984579","https://openalex.org/W2104190774","https://openalex.org/W2108230228","https://openalex.org/W2115221577","https://openalex.org/W2116660130","https://openalex.org/W2122289183","https://openalex.org/W2123497973","https://openalex.org/W2124985265","https://openalex.org/W2137786443","https://openalex.org/W2141923234","https://openalex.org/W2149217126","https://openalex.org/W2150138226","https://openalex.org/W2153498291","https://openalex.org/W2157958624","https://openalex.org/W2162277004","https://openalex.org/W2170939429","https://openalex.org/W3102334290","https://openalex.org/W4242239745"],"related_works":["https://openalex.org/W2127264766","https://openalex.org/W1994441110","https://openalex.org/W2023514407","https://openalex.org/W2059094833","https://openalex.org/W2164863097","https://openalex.org/W2048571001","https://openalex.org/W2107247956","https://openalex.org/W2156753325","https://openalex.org/W2068495621","https://openalex.org/W2052004935"],"abstract_inverted_index":{"BACKGROUND:":[0],"RNA":[1,21,32],"Editing":[2],"is":[3,107,132,154,194],"a":[4,89,112,135,155,159],"type":[5],"of":[6,19,31,48,54,69,111,116,121,162,172,178],"post-transcriptional":[7],"modification":[8],"that":[9,92],"takes":[10],"place":[11],"in":[12,67,144,167],"the":[13,17,46,52,72,176,185],"eukaryotes.":[14],"It":[15],"alters":[16],"sequence":[18],"primary":[20],"transcripts":[22],"by":[23],"deleting,":[24],"inserting":[25],"or":[26],"modifying":[27],"residues.":[28],"Several":[29],"forms":[30],"editing":[33,104,150,165,187],"have":[34],"been":[35],"discovered":[36],"including":[37,57],"A-to-I,":[38],"C-to-U,":[39],"U-to-C":[40],"and":[41,98,125,180,198],"G-to-A.":[42],"In":[43,82],"recent":[44],"years,":[45],"application":[47],"global":[49],"approaches":[50],"to":[51,63,140,146,183],"study":[53],"A-to-I":[55,103,149,164],"editing,":[56],"high":[58],"throughput":[59],"sequencing,":[60],"has":[61],"led":[62],"important":[64],"advances.":[65],"However,":[66],"spite":[68],"enormous":[70],"efforts,":[71],"real":[73],"biological":[74],"mechanism":[75],"underlying":[76],"this":[77,83],"phenomenon":[78],"remains":[79],"unknown.":[80],"DESCRIPTION:":[81],"work,":[84],"we":[85],"present":[86],"VIRGO":[87,106,153],"(http://atlas.dmi.unict.it/virgo/),":[88],"web-based":[90],"tool":[91,131,157],"maps":[93],"Ato-G":[94],"mismatches":[95],"between":[96],"genomic":[97,142,168],"EST":[99,120],"sequences":[100,143],"as":[101,203],"candidate":[102,148],"sites.":[105,151],"built":[108],"on":[109],"top":[110],"knowledge-base":[113],"integrating":[114],"information":[115],"genes":[117],"from":[118],"UCSC,":[119],"NCBI,":[122],"SNPs,":[123],"DARNED,":[124],"Next":[126],"Generations":[127],"Sequencing":[128],"data.":[129],"The":[130,170,190],"equipped":[133],"with":[134],"user-friendly":[136],"interface":[137],"allowing":[138,158],"users":[139],"analyze":[141],"order":[145],"identify":[147],"CONCLUSIONS:":[152],"powerful":[156],"systematic":[160],"identification":[161],"putative":[163],"sites":[166,188],"sequences.":[169],"integration":[171],"NGS":[173,205],"data":[174,206],"allows":[175],"computation":[177],"p-values":[179,182],"adjusted":[181],"measure":[184],"mapped":[186],"confidence.":[189],"whole":[191],"knowledge":[192],"base":[193],"available":[195],"for":[196],"download":[197],"will":[199],"be":[200],"continuously":[201],"updated":[202],"new":[204],"becomes":[207],"available.":[208]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}