{"id":"https://openalex.org/W2163184742","doi":"https://doi.org/10.1186/1471-2105-14-s7-s13","title":"A subgraph isomorphism algorithm and its application to biochemical data","display_name":"A subgraph isomorphism algorithm and its application to biochemical data","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2163184742","doi":"https://doi.org/10.1186/1471-2105-14-s7-s13","mag":"2163184742","pmid":"https://pubmed.ncbi.nlm.nih.gov/23815292"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s7-s13","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s13","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S13","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S13","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058658234","display_name":"Vincenzo Bonnici","orcid":"https://orcid.org/0000-0002-1637-7545"},"institutions":[{"id":"https://openalex.org/I119439378","display_name":"University of Verona","ror":"https://ror.org/039bp8j42","country_code":"IT","type":"education","lineage":["https://openalex.org/I119439378"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Vincenzo Bonnici","raw_affiliation_strings":["Dept. Computer Science - University of Verona, Verona, 37134, Italy","Dept. Computer Science, University of Verona, Verona, 37134, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Computer Science - University of Verona, Verona, 37134, Italy","institution_ids":["https://openalex.org/I119439378"]},{"raw_affiliation_string":"Dept. Computer Science, University of Verona, Verona, 37134, Italy","institution_ids":["https://openalex.org/I119439378"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5002057785","display_name":"Rosalba Giugno","orcid":"https://orcid.org/0000-0001-9843-7638"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Rosalba Giugno","raw_affiliation_strings":["Dept. Clinical and Molecular Biomedicine, University of Catania, Catania, 95125, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Clinical and Molecular Biomedicine, University of Catania, Catania, 95125, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5057481978","display_name":"Alfredo Pulvirenti","orcid":"https://orcid.org/0000-0002-9764-0295"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Pulvirenti","raw_affiliation_strings":["Dept. Clinical and Molecular Biomedicine, University of Catania, Catania, 95125, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Clinical and Molecular Biomedicine, University of Catania, Catania, 95125, Italy","institution_ids":["https://openalex.org/I39063666"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055576104","display_name":"Dennis Shasha","orcid":"https://orcid.org/0000-0002-7036-3312"},"institutions":[{"id":"https://openalex.org/I36672615","display_name":"Courant Institute of Mathematical Sciences","ror":"https://ror.org/037tm7f56","country_code":"US","type":"education","lineage":["https://openalex.org/I36672615","https://openalex.org/I57206974"]},{"id":"https://openalex.org/I57206974","display_name":"New York University","ror":"https://ror.org/0190ak572","country_code":"US","type":"education","lineage":["https://openalex.org/I57206974"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dennis Shasha","raw_affiliation_strings":["Courant Institute of Mathematical Sciences - New York University, NY, 10012, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Courant Institute of Mathematical Sciences - New York University, NY, 10012, USA","institution_ids":["https://openalex.org/I36672615","https://openalex.org/I57206974"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5000272110","display_name":"Alfredo Ferro","orcid":"https://orcid.org/0000-0002-9431-5788"},"institutions":[{"id":"https://openalex.org/I39063666","display_name":"University of Catania","ror":"https://ror.org/03a64bh57","country_code":"IT","type":"education","lineage":["https://openalex.org/I39063666"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alfredo Ferro","raw_affiliation_strings":["Dept. Clinical and Molecular Biomedicine, University of Catania, Catania, 95125, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Dept. Clinical and Molecular Biomedicine, University of Catania, Catania, 95125, Italy","institution_ids":["https://openalex.org/I39063666"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5002057785"],"corresponding_institution_ids":["https://openalex.org/I39063666"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":9.1147,"has_fulltext":true,"cited_by_count":206,"citation_normalized_percentile":{"value":0.98257683,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"14","issue":"S7","first_page":"S13","last_page":"S13"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.6841999888420105,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T12292","display_name":"Graph Theory and Algorithms","score":0.6841999888420105,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.17159999907016754,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11273","display_name":"Advanced Graph Neural Networks","score":0.04859999939799309,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/subgraph-isomorphism-problem","display_name":"Subgraph isomorphism problem","score":0.9558050632476807},{"id":"https://openalex.org/keywords/induced-subgraph-isomorphism-problem","display_name":"Induced subgraph isomorphism problem","score":0.7839720249176025},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6893374919891357},{"id":"https://openalex.org/keywords/reduction","display_name":"Reduction (mathematics)","score":0.574093759059906},{"id":"https://openalex.org/keywords/pruning","display_name":"Pruning","score":0.571909487247467},{"id":"https://openalex.org/keywords/graph-isomorphism","display_name":"Graph isomorphism","score":0.5662532448768616},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.5456985235214233},{"id":"https://openalex.org/keywords/heuristic","display_name":"Heuristic","score":0.4911932647228241},{"id":"https://openalex.org/keywords/isomorphism","display_name":"Isomorphism (crystallography)","score":0.4888538718223572},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4206932485103607},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3771277368068695},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.21371126174926758},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.14024856686592102},{"id":"https://openalex.org/keywords/line-graph","display_name":"Line graph","score":0.08868977427482605}],"concepts":[{"id":"https://openalex.org/C131992880","wikidata":"https://www.wikidata.org/wiki/Q2528185","display_name":"Subgraph isomorphism problem","level":3,"score":0.9558050632476807},{"id":"https://openalex.org/C191241153","wikidata":"https://www.wikidata.org/wiki/Q6027240","display_name":"Induced subgraph isomorphism problem","level":5,"score":0.7839720249176025},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6893374919891357},{"id":"https://openalex.org/C111335779","wikidata":"https://www.wikidata.org/wiki/Q3454686","display_name":"Reduction (mathematics)","level":2,"score":0.574093759059906},{"id":"https://openalex.org/C108010975","wikidata":"https://www.wikidata.org/wiki/Q500094","display_name":"Pruning","level":2,"score":0.571909487247467},{"id":"https://openalex.org/C61665672","wikidata":"https://www.wikidata.org/wiki/Q303100","display_name":"Graph isomorphism","level":4,"score":0.5662532448768616},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.5456985235214233},{"id":"https://openalex.org/C173801870","wikidata":"https://www.wikidata.org/wiki/Q201413","display_name":"Heuristic","level":2,"score":0.4911932647228241},{"id":"https://openalex.org/C203436722","wikidata":"https://www.wikidata.org/wiki/Q902950","display_name":"Isomorphism (crystallography)","level":3,"score":0.4888538718223572},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4206932485103607},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3771277368068695},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.21371126174926758},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.14024856686592102},{"id":"https://openalex.org/C203776342","wikidata":"https://www.wikidata.org/wiki/Q1378376","display_name":"Line graph","level":3,"score":0.08868977427482605},{"id":"https://openalex.org/C115624301","wikidata":"https://www.wikidata.org/wiki/Q895901","display_name":"Crystal structure","level":2,"score":0.0},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C2524010","wikidata":"https://www.wikidata.org/wiki/Q8087","display_name":"Geometry","level":1,"score":0.0},{"id":"https://openalex.org/C6557445","wikidata":"https://www.wikidata.org/wiki/Q173113","display_name":"Agronomy","level":1,"score":0.0},{"id":"https://openalex.org/C22149727","wikidata":"https://www.wikidata.org/wiki/Q7940747","display_name":"Voltage graph","level":4,"score":0.0},{"id":"https://openalex.org/C8010536","wikidata":"https://www.wikidata.org/wiki/Q160398","display_name":"Crystallography","level":1,"score":0.0},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-14-s7-s13","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s13","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S13","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23815292","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23815292","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2631490","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3633016","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s7-s13","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s7-s13","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S7-S13","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15","score":0.4000000059604645}],"awards":[{"id":"https://openalex.org/G3848063861","display_name":null,"funder_award_id":"2007-2013","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5077087964","display_name":null,"funder_award_id":"1.1.2","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"}],"funders":[{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2163184742.pdf","grobid_xml":"https://content.openalex.org/works/W2163184742.grobid-xml"},"referenced_works_count":62,"referenced_works":["https://openalex.org/W9419878","https://openalex.org/W85648037","https://openalex.org/W627487437","https://openalex.org/W1498814251","https://openalex.org/W1508044906","https://openalex.org/W1536376495","https://openalex.org/W1641749581","https://openalex.org/W1677817168","https://openalex.org/W1967688579","https://openalex.org/W1968743014","https://openalex.org/W1971105294","https://openalex.org/W1975068437","https://openalex.org/W1978019457","https://openalex.org/W1990600049","https://openalex.org/W1991477862","https://openalex.org/W2010532254","https://openalex.org/W2010541316","https://openalex.org/W2011039300","https://openalex.org/W2013497015","https://openalex.org/W2022209941","https://openalex.org/W2022239314","https://openalex.org/W2026155585","https://openalex.org/W2056524360","https://openalex.org/W2057545775","https://openalex.org/W2068379792","https://openalex.org/W2082403159","https://openalex.org/W2087237081","https://openalex.org/W2088901672","https://openalex.org/W2096779641","https://openalex.org/W2102057828","https://openalex.org/W2105302963","https://openalex.org/W2109464129","https://openalex.org/W2110034858","https://openalex.org/W2112262143","https://openalex.org/W2123916114","https://openalex.org/W2123966888","https://openalex.org/W2126359798","https://openalex.org/W2136593687","https://openalex.org/W2141366228","https://openalex.org/W2142491343","https://openalex.org/W2142965177","https://openalex.org/W2143163611","https://openalex.org/W2145580869","https://openalex.org/W2145631416","https://openalex.org/W2147405597","https://openalex.org/W2152475379","https://openalex.org/W2153624566","https://openalex.org/W2155070669","https://openalex.org/W2165107146","https://openalex.org/W2167205203","https://openalex.org/W2169310183","https://openalex.org/W2170726034","https://openalex.org/W2171081680","https://openalex.org/W2498422370","https://openalex.org/W2561675875","https://openalex.org/W2903174694","https://openalex.org/W3106926726","https://openalex.org/W3156146620","https://openalex.org/W4239067298","https://openalex.org/W4285719527","https://openalex.org/W4300874750","https://openalex.org/W4301404790"],"related_works":["https://openalex.org/W1482551403","https://openalex.org/W2954463587","https://openalex.org/W2393701947","https://openalex.org/W2915540008","https://openalex.org/W2018568077","https://openalex.org/W2128390795","https://openalex.org/W1965191464","https://openalex.org/W231720905","https://openalex.org/W84561889","https://openalex.org/W2183579781"],"abstract_inverted_index":{"BACKGROUND:":[0],"Graphs":[1],"can":[2],"represent":[3],"biological":[4],"networks":[5,130],"at":[6],"the":[7,36,42,47,85,103,138,222],"molecular,":[8],"protein,":[9],"or":[10,94],"species":[11],"level.":[12],"An":[13],"important":[14],"query":[15],"is":[16,31,56],"to":[17,25,57,82,181,234],"find":[18],"all":[19,221],"matches":[20],"of":[21,38,53,117,141,177,217],"a":[22,26,72,79,134,174,194],"pattern":[23],"graph":[24],"target":[27],"graph.":[28],"Accomplishing":[29],"this":[30],"inherently":[32],"difficult":[33],"(NP-complete)":[34],"and":[35,64,106,113,128,150,187,212],"efficiency":[37],"heuristic":[39],"algorithms":[40,55,110,164],"for":[41],"problem":[43],"may":[44,231],"depend":[45],"upon":[46],"input":[48],"graphs.":[49],"The":[50],"common":[51],"aim":[52],"existing":[54],"eliminate":[58],"unsuccessful":[59],"mappings":[60],"as":[61,63,65,67,157],"early":[62],"inexpensively":[66],"possible.":[68],"RESULTS:":[69],"We":[70,98,132,203],"propose":[71],"new":[73],"subgraph":[74,108,182,236],"isomorphism":[75,109,163,183,237],"algorithm":[76,154],"which":[77,119],"applies":[78],"search":[80,86],"strategy":[81],"significantly":[83],"reduce":[84],"space":[87],"without":[88],"using":[89],"any":[90],"complex":[91],"pruning":[92],"rules":[93],"domain":[95],"reduction":[96,136],"procedures.":[97],"compare":[99],"our":[100,114,142,153,210,213,229],"method":[101],"with":[102,145,220],"most":[104],"recent":[105],"efficient":[107],"(VFlib,":[111],"LAD,":[112],"C++":[115,215],"implementation":[116,216],"FocusSearch":[118,218],"was":[120],"originally":[121],"distributed":[122],"in":[123,137],"Modula2)":[124],"on":[125,200],"synthetic,":[126],"molecules,":[127],"interaction":[129],"data.":[131],"show":[133,151],"significant":[135],"running":[139],"time":[140],"approach":[143],"compared":[144],"these":[146],"other":[147],"excellent":[148],"methods":[149,198],"that":[152],"scales":[155],"well":[156],"memory":[158],"demands":[159],"increase.":[160],"CONCLUSIONS:":[161],"Subgraph":[162],"are":[165],"intensively":[166],"used":[167,223],"by":[168],"biochemical":[169],"tools.":[170],"Our":[171],"analysis":[172],"gives":[173],"comprehensive":[175],"comparison":[176],"different":[178],"software":[179],"approaches":[180],"highlighting":[184],"their":[185,201],"weaknesses":[186],"strengths.":[188],"This":[189],"will":[190],"help":[191],"researchers":[192],"make":[193],"rational":[195],"choice":[196],"among":[197],"depending":[199],"application.":[202],"also":[204],"distribute":[205],"an":[206],"open-source":[207],"package":[208],"including":[209],"system":[211],"own":[214],"together":[219],"datasets":[224],"(http://ferrolab.dmi.unict.it/ri.html).":[225],"In":[226],"future":[227],"work,":[228],"findings":[230],"be":[232],"extended":[233],"approximate":[235],"algorithms.":[238]},"counts_by_year":[{"year":2026,"cited_by_count":2},{"year":2025,"cited_by_count":23},{"year":2024,"cited_by_count":26},{"year":2023,"cited_by_count":24},{"year":2022,"cited_by_count":14},{"year":2021,"cited_by_count":22},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":18},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":11},{"year":2016,"cited_by_count":10},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":1}],"updated_date":"2026-06-10T14:10:52.464848","created_date":"2025-10-10T00:00:00"}
