{"id":"https://openalex.org/W1956617022","doi":"https://doi.org/10.1186/1471-2105-14-s6-s9","title":"In silico investigation into dendritic cell regulation of CD8Treg mediated killing of Th1 cells in murine experimental autoimmune encephalomyelitis","display_name":"In silico investigation into dendritic cell regulation of CD8Treg mediated killing of Th1 cells in murine experimental autoimmune encephalomyelitis","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W1956617022","doi":"https://doi.org/10.1186/1471-2105-14-s6-s9","mag":"1956617022","pmid":"https://pubmed.ncbi.nlm.nih.gov/23734666"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s6-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s6-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S6-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S6-S9","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072139660","display_name":"Richard A. Williams","orcid":"https://orcid.org/0000-0001-6333-9448"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Richard A Williams","raw_affiliation_strings":["Department of Computer Science, University of York, York, UK. raw507@york.ac.uk","[Dept. of Comput. Sci., Univ. of York, York, UK]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of York, York, UK. raw507@york.ac.uk","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"[Dept. of Comput. Sci., Univ. of York, York, UK]","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110498085","display_name":"Richard B. Greaves","orcid":null},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Richard Greaves","raw_affiliation_strings":["Department of Computer Science, University of York, York, YO10 5GH, UK","[Dept. of Comput. Sci., Univ. of York, York, UK]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of York, York, YO10 5GH, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"[Dept. of Comput. Sci., Univ. of York, York, UK]","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5071891762","display_name":"Mark Read","orcid":"https://orcid.org/0000-0002-1481-4780"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Read","raw_affiliation_strings":["Department of Electronics, University of York, York, YO10 5DD, UK","[Dept of Electronics, University of York, York, UK]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronics, University of York, York, YO10 5DD, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"[Dept of Electronics, University of York, York, UK]","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5080582720","display_name":"Jon Timmis","orcid":"https://orcid.org/0000-0003-1055-0471"},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Jon Timmis","raw_affiliation_strings":["Department of Computer Science, University of York, York, YO10 5GH, UK","Department of Electronics, University of York, York, YO10 5DD, UK","Department of Electronics, University of York, York, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of York, York, YO10 5GH, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"Department of Electronics, University of York, York, YO10 5DD, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"Department of Electronics, University of York, York, UK","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5105835589","display_name":"Paul S. Andrews","orcid":null},"institutions":[{"id":"https://openalex.org/I52099693","display_name":"University of York","ror":"https://ror.org/04m01e293","country_code":"GB","type":"education","lineage":["https://openalex.org/I52099693"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Paul S Andrews","raw_affiliation_strings":["Department of Computer Science, University of York, York, YO10 5GH, UK","[Dept. of Comput. Sci., Univ. of York, York, UK]"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science, University of York, York, YO10 5GH, UK","institution_ids":["https://openalex.org/I52099693"]},{"raw_affiliation_string":"[Dept. of Comput. Sci., Univ. of York, York, UK]","institution_ids":["https://openalex.org/I52099693"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5072512711","display_name":"Vipin Kumar","orcid":"https://orcid.org/0000-0002-2838-2472"},"institutions":[{"id":"https://openalex.org/I40399489","display_name":"Torrey Pines Institute For Molecular Studies","ror":"https://ror.org/01grq2104","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I40399489"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Vipin Kumar","raw_affiliation_strings":["Laboratory of Autoimmunity, Torrey Pines Institute for Molecular Studies, San Diego, CA, 92121-1122, USA","Laboratory of Autoimmunity,  Torrey Pines Institute for Molecular Studies, San Diego, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Laboratory of Autoimmunity, Torrey Pines Institute for Molecular Studies, San Diego, CA, 92121-1122, USA","institution_ids":["https://openalex.org/I40399489"]},{"raw_affiliation_string":"Laboratory of Autoimmunity,  Torrey Pines Institute for Molecular Studies, San Diego, USA","institution_ids":["https://openalex.org/I40399489"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5072139660"],"corresponding_institution_ids":["https://openalex.org/I52099693"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.3114,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.78760738,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"S6","first_page":"S9","last_page":"S9"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.5763999819755554,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10031","display_name":"T-cell and B-cell Immunology","score":0.5763999819755554,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.28600001335144043,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.0357000008225441,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/priming","display_name":"Priming (agriculture)","score":0.733979344367981},{"id":"https://openalex.org/keywords/experimental-autoimmune-encephalomyelitis","display_name":"Experimental autoimmune encephalomyelitis","score":0.6761422753334045},{"id":"https://openalex.org/keywords/cytotoxic-t-cell","display_name":"Cytotoxic T cell","score":0.6492205858230591},{"id":"https://openalex.org/keywords/antigen-presenting-cell","display_name":"Antigen-presenting cell","score":0.6033374071121216},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.593515157699585},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5674462914466858},{"id":"https://openalex.org/keywords/dendritic-cell","display_name":"Dendritic cell","score":0.5042546987533569},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.45755138993263245},{"id":"https://openalex.org/keywords/t-cell","display_name":"T cell","score":0.44090837240219116},{"id":"https://openalex.org/keywords/follicular-dendritic-cells","display_name":"Follicular dendritic cells","score":0.43604621291160583},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.3943481147289276},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.37794575095176697},{"id":"https://openalex.org/keywords/in-vitro","display_name":"In vitro","score":0.10694751143455505}],"concepts":[{"id":"https://openalex.org/C81444415","wikidata":"https://www.wikidata.org/wiki/Q7243535","display_name":"Priming (agriculture)","level":3,"score":0.733979344367981},{"id":"https://openalex.org/C2778486448","wikidata":"https://www.wikidata.org/wiki/Q494066","display_name":"Experimental autoimmune encephalomyelitis","level":3,"score":0.6761422753334045},{"id":"https://openalex.org/C154317977","wikidata":"https://www.wikidata.org/wiki/Q376266","display_name":"Cytotoxic T cell","level":3,"score":0.6492205858230591},{"id":"https://openalex.org/C67662055","wikidata":"https://www.wikidata.org/wiki/Q1047791","display_name":"Antigen-presenting cell","level":4,"score":0.6033374071121216},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.593515157699585},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5674462914466858},{"id":"https://openalex.org/C2778170410","wikidata":"https://www.wikidata.org/wiki/Q506253","display_name":"Dendritic cell","level":3,"score":0.5042546987533569},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.45755138993263245},{"id":"https://openalex.org/C2776090121","wikidata":"https://www.wikidata.org/wiki/Q193529","display_name":"T cell","level":3,"score":0.44090837240219116},{"id":"https://openalex.org/C3753494","wikidata":"https://www.wikidata.org/wiki/Q2631550","display_name":"Follicular dendritic cells","level":5,"score":0.43604621291160583},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.3943481147289276},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.37794575095176697},{"id":"https://openalex.org/C202751555","wikidata":"https://www.wikidata.org/wiki/Q221681","display_name":"In vitro","level":2,"score":0.10694751143455505},{"id":"https://openalex.org/C100701293","wikidata":"https://www.wikidata.org/wiki/Q193838","display_name":"Germination","level":2,"score":0.0},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000938","descriptor_name":"Antigen-Presenting Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000938","descriptor_name":"Antigen-Presenting Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000938","descriptor_name":"Antigen-Presenting Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000150","qualifier_name":"complications","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D001327","descriptor_name":"Autoimmune Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003713","descriptor_name":"Dendritic Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003713","descriptor_name":"Dendritic Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D003713","descriptor_name":"Dendritic Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D004681","descriptor_name":"Encephalomyelitis, Autoimmune, Experimental","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D004681","descriptor_name":"Encephalomyelitis, Autoimmune, Experimental","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D004681","descriptor_name":"Encephalomyelitis, Autoimmune, Experimental","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D004681","descriptor_name":"Encephalomyelitis, Autoimmune, Experimental","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004681","descriptor_name":"Encephalomyelitis, Autoimmune, Experimental","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004681","descriptor_name":"Encephalomyelitis, Autoimmune, Experimental","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013602","descriptor_name":"T-Lymphocytes, Cytotoxic","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013602","descriptor_name":"T-Lymphocytes, Cytotoxic","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D013602","descriptor_name":"T-Lymphocytes, Cytotoxic","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D015395","descriptor_name":"Histocompatibility Antigens Class I","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018414","descriptor_name":"CD8-Positive T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018414","descriptor_name":"CD8-Positive T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018414","descriptor_name":"CD8-Positive T-Lymphocytes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018417","descriptor_name":"Th1 Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018417","descriptor_name":"Th1 Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D018417","descriptor_name":"Th1 Cells","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D050378","descriptor_name":"T-Lymphocytes, Regulatory","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D050378","descriptor_name":"T-Lymphocytes, Regulatory","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D050378","descriptor_name":"T-Lymphocytes, Regulatory","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-14-s6-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s6-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S6-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23734666","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23734666","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.lancs.ac.uk:65379","is_oa":true,"landing_page_url":"https://eprints.lancs.ac.uk/id/eprint/65379/","pdf_url":null,"source":{"id":"https://openalex.org/S4306401916","display_name":"Lancaster EPrints (Lancaster University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I67415387","host_organization_name":"Lancaster University","host_organization_lineage":["https://openalex.org/I67415387"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2631497","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3633023","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s6-s9","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s6-s9","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S6-S9","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","id":"https://metadata.un.org/sdg/3","score":0.47999998927116394}],"awards":[{"id":"https://openalex.org/G313042574","display_name":null,"funder_award_id":"EP/E053505/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G5748799696","display_name":"CoSMoS: Complex Systems Modelling and Simulation","funder_award_id":"EP/E053505/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G606666009","display_name":null,"funder_award_id":"EP/I005943/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320006","display_name":"Royal Society","ror":"https://ror.org/03wnrjx87"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1956617022.pdf","grobid_xml":"https://content.openalex.org/works/W1956617022.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W19500039","https://openalex.org/W599972599","https://openalex.org/W1492187062","https://openalex.org/W1563306815","https://openalex.org/W1571366845","https://openalex.org/W1869562044","https://openalex.org/W1965335252","https://openalex.org/W1968911802","https://openalex.org/W1972978214","https://openalex.org/W1986553367","https://openalex.org/W2022478282","https://openalex.org/W2029599607","https://openalex.org/W2052453488","https://openalex.org/W2076457786","https://openalex.org/W2079816176","https://openalex.org/W2122096954","https://openalex.org/W2132635773","https://openalex.org/W2136389988","https://openalex.org/W2144244247","https://openalex.org/W2149200785","https://openalex.org/W2151363901","https://openalex.org/W2152237445","https://openalex.org/W2170240282","https://openalex.org/W2184255997","https://openalex.org/W2395732550"],"related_works":["https://openalex.org/W1975194114","https://openalex.org/W2896082318","https://openalex.org/W2053977087","https://openalex.org/W2115362121","https://openalex.org/W2375999619","https://openalex.org/W2083909888","https://openalex.org/W2106433656","https://openalex.org/W2952658094","https://openalex.org/W1533866843","https://openalex.org/W2939962952"],"abstract_inverted_index":{"BACKGROUND:":[0],"Experimental":[1],"autoimmune":[2,98,261],"encephalomyelitis":[3,99],"has":[4,33],"been":[5,35],"used":[6],"extensively":[7],"as":[8,240],"an":[9],"animal":[10],"model":[11],"of":[12,47,79,96,113,125,175,192,226,246,266,270,291,321,326],"T":[13,30,294,329],"cell":[14,285],"mediated":[15,123,244],"autoimmunity.":[16],"A":[17],"down-regulatory":[18],"pathway":[19],"through":[20,181,189],"which":[21],"encephalitogenic":[22,126,163,205],"CD4Th1":[23,127,164,206,227,247],"cells":[24,31,40,58,68,115,132,158,187,207,211,233,248,252,272,281,299],"are":[25,178],"killed":[26],"by":[27,43,65,116,195,215,229],"CD8":[28],"regulatory":[29],"(Treg)":[32],"recently":[34],"proposed.":[36],"With":[37],"the":[38,74,83,111,120,190,204,216,259,264,267,274,283,289,292,313,318,324,327],"CD8Treg":[39,71,114,122,176,210,232,243,280,322],"being":[41],"primed":[42,214],"dendritic":[44,67,117,131,157,196,218,237,251,271,284,298],"cells,":[45,72,118,238,323],"regulation":[46,228],"recovery":[48,257],"may":[49],"be":[50,213,307,333],"occuring":[51],"around":[52,235,250,282],"these":[53],"antigen":[54],"presenting":[55],"cells.":[56,128,167,197,219],"CD4Treg":[57,186,268,278],"provide":[59],"critical":[60,255,287],"help":[61,81],"within":[62],"this":[63,80],"process,":[64,315],"licensing":[66,269,314],"to":[69,104,212,309],"prime":[70,161],"however":[73],"spatial":[75,183,275,319],"and":[76,119,165,188,208,239,273,279],"temporal":[77],"aspects":[78],"in":[82,107,137,169],"CTL":[84],"response":[85,331],"is":[86,152,200,253,286],"currently":[87],"unclear.":[88],"RESULTS:":[89],"We":[90,101,220],"have":[91,300],"previously":[92],"developed":[93],"a":[94,138,301],"simulator":[95],"experimental":[97],"(ARTIMMUS).":[100],"use":[102],"ARTIMMUS":[103],"perform":[105],"novel":[106],"silico":[108,170],"experimentation":[109,171],"regarding":[110],"priming":[112,177],"resulting":[121],"killing":[124,245],"Simulations":[129],"using":[130],"that":[133,150,159,173,222,242],"present":[134],"antigenic":[135],"peptides":[136],"mutually":[139],"exclusive":[140],"manner":[141],"(either":[142],"MBP":[143],"or":[144,316],"TCR-derived,":[145],"but":[146],"not":[147,254],"both)":[148],"suggest":[149],"there":[151],"no":[153,201,223],"significant":[154,224],"reliance":[155],"on":[156],"can":[160,306,332],"both":[162],"Treg":[166],"Further,":[168],"suggests":[172],"dynamics":[174],"significantly":[179],"influenced":[180],"their":[182],"competition":[184,276],"with":[185],"timing":[191,265],"Qa-1":[193,230],"expression":[194],"CONCLUSION:":[198],"There":[199],"requirement":[202],"for":[203,256,288],"cytotoxic":[209,293,328],"same":[217],"conjecture":[221],"portion":[225],"restricted":[231],"occurs":[234],"individual":[236],"such,":[241],"occurring":[249],"from":[258],"murine":[260],"disease.":[262],"Furthermore,":[263],"between":[277],"size":[290],"lymphocyte":[295,330],"response,":[296],"because":[297],"limited":[302],"lifespan.":[303],"If":[304],"treatments":[305],"found":[308],"either":[310],"speed":[311],"up":[312],"increase":[317],"competitiveness":[320],"magnitude":[325],"increased.":[334]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":2},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":2}],"updated_date":"2026-06-19T15:47:20.252518","created_date":"2025-10-10T00:00:00"}
