{"id":"https://openalex.org/W2137851650","doi":"https://doi.org/10.1186/1471-2105-14-s5-s2","title":"metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences","display_name":"metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences","publication_year":2013,"publication_date":"2013-04-01","ids":{"openalex":"https://openalex.org/W2137851650","doi":"https://doi.org/10.1186/1471-2105-14-s5-s2","mag":"2137851650","pmid":"https://pubmed.ncbi.nlm.nih.gov/23734710"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S5-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5072750845","display_name":"Christina Ander","orcid":null},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Christina Ander","raw_affiliation_strings":["Computational Biology Group, Illumina Cambridge Ltd,, Chesterford Research Park, Little Chesterford, Essex, United Kingdom","Genome Informatics, Faculty of Technology and CeBiTec, Bielefeld University, Bielefeld, Germany"],"affiliations":[{"raw_affiliation_string":"Computational Biology Group, Illumina Cambridge Ltd,, Chesterford Research Park, Little Chesterford, Essex, United Kingdom","institution_ids":[]},{"raw_affiliation_string":"Genome Informatics, Faculty of Technology and CeBiTec, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5001197834","display_name":"Ole Schulz-Trieglaff","orcid":null},"institutions":[{"id":"https://openalex.org/I4210113899","display_name":"Illumina (United Kingdom)","ror":"https://ror.org/027c2yv63","country_code":"GB","type":"company","lineage":["https://openalex.org/I178645029","https://openalex.org/I4210113899"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ole B Schulz-Trieglaff","raw_affiliation_strings":["Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex, CB10 1XL, United Kingdom","Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex, CB10 1XL, United Kingdom","institution_ids":["https://openalex.org/I4210113899"]},{"raw_affiliation_string":"Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, United Kingdom","institution_ids":["https://openalex.org/I4210113899"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019771245","display_name":"Jens Stoye","orcid":"https://orcid.org/0000-0002-4656-7155"},"institutions":[{"id":"https://openalex.org/I20121455","display_name":"Bielefeld University","ror":"https://ror.org/02hpadn98","country_code":"DE","type":"education","lineage":["https://openalex.org/I20121455"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens Stoye","raw_affiliation_strings":["Genome Informatics, Faculty of Technology and CeBiTec, Bielefeld University, Bielefeld, Germany"],"affiliations":[{"raw_affiliation_string":"Genome Informatics, Faculty of Technology and CeBiTec, Bielefeld University, Bielefeld, Germany","institution_ids":["https://openalex.org/I20121455"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5075502199","display_name":"Anthony J. Cox","orcid":"https://orcid.org/0000-0002-6534-749X"},"institutions":[{"id":"https://openalex.org/I4210113899","display_name":"Illumina (United Kingdom)","ror":"https://ror.org/027c2yv63","country_code":"GB","type":"company","lineage":["https://openalex.org/I178645029","https://openalex.org/I4210113899"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Anthony J Cox","raw_affiliation_strings":["Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex, CB10 1XL, United Kingdom","Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, United Kingdom"],"affiliations":[{"raw_affiliation_string":"Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, Essex, CB10 1XL, United Kingdom","institution_ids":["https://openalex.org/I4210113899"]},{"raw_affiliation_string":"Computational Biology Group, Illumina Cambridge Ltd., Chesterford Research Park, Little Chesterford, United Kingdom","institution_ids":["https://openalex.org/I4210113899"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5072750845"],"corresponding_institution_ids":["https://openalex.org/I20121455"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.894,"has_fulltext":true,"cited_by_count":19,"citation_normalized_percentile":{"value":0.9001727,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"S5","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T11791","display_name":"Microbial Community Ecology and Physiology","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/2303","display_name":"Ecology"},"field":{"id":"https://openalex.org/fields/23","display_name":"Environmental Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9995999932289124,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10066","display_name":"Gut microbiota and health","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/shotgun-sequencing","display_name":"Shotgun sequencing","score":0.7719405889511108},{"id":"https://openalex.org/keywords/shotgun","display_name":"Shotgun","score":0.6630967259407043},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.6459077000617981},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6363528966903687},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5827308297157288},{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.5462101101875305},{"id":"https://openalex.org/keywords/throughput","display_name":"Throughput","score":0.46998491883277893},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.4690825045108795},{"id":"https://openalex.org/keywords/dna","display_name":"DNA","score":0.44141316413879395},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.23052403330802917},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.21645274758338928},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.06547358632087708}],"concepts":[{"id":"https://openalex.org/C101985253","wikidata":"https://www.wikidata.org/wiki/Q1073526","display_name":"Shotgun sequencing","level":4,"score":0.7719405889511108},{"id":"https://openalex.org/C2781434637","wikidata":"https://www.wikidata.org/wiki/Q486396","display_name":"Shotgun","level":3,"score":0.6630967259407043},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.6459077000617981},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6363528966903687},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5827308297157288},{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.5462101101875305},{"id":"https://openalex.org/C157764524","wikidata":"https://www.wikidata.org/wiki/Q1383412","display_name":"Throughput","level":3,"score":0.46998491883277893},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.4690825045108795},{"id":"https://openalex.org/C552990157","wikidata":"https://www.wikidata.org/wiki/Q7430","display_name":"DNA","level":2,"score":0.44141316413879395},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.23052403330802917},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.21645274758338928},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.06547358632087708},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0},{"id":"https://openalex.org/C555944384","wikidata":"https://www.wikidata.org/wiki/Q249","display_name":"Wireless","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004783","descriptor_name":"Environmental Microbiology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D056186","descriptor_name":"Metagenomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D064307","descriptor_name":"Microbiota","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23734710","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23734710","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2624527","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3622627","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pub.librecat.org:2575011","is_oa":false,"landing_page_url":"https://pub.uni-bielefeld.de/record/2575011","pdf_url":null,"source":{"id":"https://openalex.org/S4306401671","display_name":"PUB \u2013 Publications at Bielefeld University (Bielefeld University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I20121455","host_organization_name":"Bielefeld University","host_organization_lineage":["https://openalex.org/I20121455"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Ander C, Schulz-Trieglaff OB, Stoye J, Cox AJ. metaBEETL: high-throughput analysis of heterogeneous microbial populations from shotgun DNA sequences. &lt;em&gt;BMC Bioinformatics&lt;/em&gt;. 2013;14(Suppl 5: Proc. of RECOMB-Seq 2013):S2.","raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3622627","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3622627","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s5-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s5-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S5-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","score":0.5400000214576721,"display_name":"Life in Land"}],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2137851650.pdf","grobid_xml":"https://content.openalex.org/works/W2137851650.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W9498632","https://openalex.org/W1488229309","https://openalex.org/W1972166243","https://openalex.org/W2000589358","https://openalex.org/W2048818637","https://openalex.org/W2055043387","https://openalex.org/W2070958311","https://openalex.org/W2091922579","https://openalex.org/W2103441770","https://openalex.org/W2113601822","https://openalex.org/W2113606293","https://openalex.org/W2115501618","https://openalex.org/W2116895571","https://openalex.org/W2124985265","https://openalex.org/W2150484441","https://openalex.org/W2152885278","https://openalex.org/W2156841201","https://openalex.org/W2158322625","https://openalex.org/W2161048357","https://openalex.org/W2171571559","https://openalex.org/W3105789150","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W4210312276","https://openalex.org/W2417514914","https://openalex.org/W1641084016","https://openalex.org/W2018832993","https://openalex.org/W4255415692","https://openalex.org/W3128701120","https://openalex.org/W2733238538","https://openalex.org/W2994945316","https://openalex.org/W4253705341","https://openalex.org/W1989359751"],"abstract_inverted_index":{"Environmental":[0],"shotgun":[1,70],"sequencing":[2,15,29,81],"(ESS)":[3],"has":[4,30,97],"potential":[5],"to":[6,42,127,134,142,164,197,200,204],"give":[7],"greater":[8],"insight":[9],"into":[10],"microbial":[11,88],"communities":[12],"than":[13],"targeted":[14],"of":[16,27,79,87,108,217],"16S":[17],"regions,":[18],"but":[19,50,138],"requires":[20],"much":[21],"higher":[22,144],"sequence":[23,117],"coverage.":[24],"The":[25],"advent":[26],"next-generation":[28],"made":[31],"it":[32],"feasible":[33],"for":[34,54,68,211],"the":[35,80,102,105,109,171,179,184,206,212,218],"Human":[36],"Microbiome":[37],"Project":[38],"and":[39,83,191,210],"other":[40,92,168],"initiatives":[41],"generate":[43],"ESS":[44],"data":[45,57,202],"on":[46,101,147],"a":[47,64,74,223],"large":[48,201],"scale,":[49],"computationally":[51],"efficient":[52],"methods":[53],"analysing":[55],"such":[56],"sets":[58],"are":[59,131,139,157],"needed.Here":[60],"we":[61],"present":[62],"metaBEETL,":[63],"fast":[65],"taxonomic":[66,151,172,213],"classifier":[67],"environmental":[69,181],"sequences.":[71,90],"It":[72],"uses":[73],"Burrows-Wheeler":[75],"Transform":[76],"(BWT)":[77],"index":[78,123],"reads":[82,129],"an":[84,135],"indexed":[85,208],"database":[86,209],"reference":[89,110,122],"Unlike":[91],"BWT-based":[93],"tools,":[94],"our":[95,121],"method":[96],"no":[98],"upper":[99],"limit":[100],"number":[103],"or":[104],"total":[106],"size":[107],"sequences":[111],"in":[112],"its":[113,187],"database.":[114],"By":[115],"capturing":[116],"relationships":[118],"between":[119],"strains,":[120],"also":[124],"allows":[125],"us":[126],"classify":[128],"which":[130,167],"not":[132],"unique":[133],"individual":[136],"strain":[137],"nevertheless":[140],"specific":[141],"some":[143],"phylogenetic":[145],"order.Tested":[146],"datasets":[148],"with":[149,159],"known":[150],"composition,":[152],"metaBEETL":[153,176,196],"gave":[154],"results":[155],"that":[156],"competitive":[158],"existing":[160],"similarity-based":[161],"tools:":[162],"due":[163],"normalization":[165],"steps":[166],"classifiers":[169],"lack,":[170],"profile":[173],"computed":[174],"by":[175],"closely":[177],"matched":[178],"true":[180],"profile.":[182],"At":[183],"same":[185],"time,":[186],"moderate":[188],"running":[189],"time":[190],"low":[192],"memory":[193],"footprint":[194],"allow":[195],"scale":[198],"well":[199],"sets.Code":[203],"construct":[205],"BWT":[207],"classification":[214],"is":[215],"part":[216],"BEETL":[219],"library,":[220],"available":[221],"as":[222],"github":[224],"repository":[225],"at":[226],"git@github.com:BEETL/BEETL.git.":[227]},"counts_by_year":[{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-04-04T16:13:02.066488","created_date":"2025-10-10T00:00:00"}
