{"id":"https://openalex.org/W1977453933","doi":"https://doi.org/10.1186/1471-2105-14-s2-s16","title":"Spiral search: a hydrophobic-core directed local search for simplified PSP on 3D FCC lattice","display_name":"Spiral search: a hydrophobic-core directed local search for simplified PSP on 3D FCC lattice","publication_year":2013,"publication_date":"2013-01-01","ids":{"openalex":"https://openalex.org/W1977453933","doi":"https://doi.org/10.1186/1471-2105-14-s2-s16","mag":"1977453933","pmid":"https://pubmed.ncbi.nlm.nih.gov/23368706"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s2-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s2-s16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S2-S16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S2-S16","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5086125031","display_name":"Mahmood A. Rashid","orcid":"https://orcid.org/0000-0003-3347-2381"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]}],"countries":["AU"],"is_corresponding":true,"raw_author_name":"Mahmood A Rashid","raw_affiliation_strings":["Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia. mahmood.rashid@nicta.com.au","Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia. mahmood.rashid@nicta.com.au","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029449783","display_name":"MA Hakim Newton","orcid":null},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"MA Hakim Newton","raw_affiliation_strings":["Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","Queensland Research Lab, National ICT Australia, QLD, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Queensland Research Lab, National ICT Australia, QLD, Australia","institution_ids":["https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055092646","display_name":"Md Tamjidul Hoque","orcid":"https://orcid.org/0000-0002-0110-2194"},"institutions":[{"id":"https://openalex.org/I192396691","display_name":"University of New Orleans","ror":"https://ror.org/034mtvk83","country_code":"US","type":"education","lineage":["https://openalex.org/I192396691","https://openalex.org/I2799628689"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Md Tamjidul Hoque","raw_affiliation_strings":["Computer Science, University of New Orleans, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Computer Science, University of New Orleans, USA","institution_ids":["https://openalex.org/I192396691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067504579","display_name":"Swakkhar Shatabda","orcid":"https://orcid.org/0000-0003-0669-072X"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Swakkhar Shatabda","raw_affiliation_strings":["Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","Queensland Research Lab, National ICT Australia, QLD, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Queensland Research Lab, National ICT Australia, QLD, Australia","institution_ids":["https://openalex.org/I42894916"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5033848427","display_name":"Duc Nghia Pham","orcid":"https://orcid.org/0009-0001-8985-017X"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Duc Nghia Pham","raw_affiliation_strings":["Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","Queensland Research Lab, National ICT Australia, QLD, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Queensland Research Lab, National ICT Australia, QLD, Australia","institution_ids":["https://openalex.org/I42894916"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5038675407","display_name":"Abdul Sattar","orcid":"https://orcid.org/0000-0002-2567-2052"},"institutions":[{"id":"https://openalex.org/I11701301","display_name":"Griffith University","ror":"https://ror.org/02sc3r913","country_code":"AU","type":"education","lineage":["https://openalex.org/I11701301"]},{"id":"https://openalex.org/I42894916","display_name":"Data61","ror":"https://ror.org/03q397159","country_code":"AU","type":"other","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I42894916","https://openalex.org/I4387156119"]}],"countries":["AU"],"is_corresponding":false,"raw_author_name":"Abdul Sattar","raw_affiliation_strings":["Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","Queensland Research Lab, National ICT Australia, QLD, Australia"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Integrated & Intelligent Systems, Griffith University, QLD, Australia","institution_ids":["https://openalex.org/I11701301"]},{"raw_affiliation_string":"Queensland Research Lab, National ICT Australia, QLD, Australia","institution_ids":["https://openalex.org/I42894916"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5086125031"],"corresponding_institution_ids":["https://openalex.org/I11701301"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.7884,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.84138118,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"S2","first_page":"S16","last_page":"S16"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9085000157356262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9085000157356262,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.05220000073313713,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10222","display_name":"Genomics and Chromatin Dynamics","score":0.014600000344216824,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/tabu-search","display_name":"Tabu search","score":0.6296062469482422},{"id":"https://openalex.org/keywords/protein-structure-prediction","display_name":"Protein structure prediction","score":0.6001931428909302},{"id":"https://openalex.org/keywords/local-search","display_name":"Local search (optimization)","score":0.5490708947181702},{"id":"https://openalex.org/keywords/benchmark","display_name":"Benchmark (surveying)","score":0.5305419564247131},{"id":"https://openalex.org/keywords/convergence","display_name":"Convergence (economics)","score":0.4975917637348175},{"id":"https://openalex.org/keywords/lattice-protein","display_name":"Lattice protein","score":0.4945811927318573},{"id":"https://openalex.org/keywords/lattice","display_name":"Lattice (music)","score":0.49405649304389954},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.4890936017036438},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.4884573519229889},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.46686363220214844},{"id":"https://openalex.org/keywords/core","display_name":"Core (optical fiber)","score":0.4623791575431824},{"id":"https://openalex.org/keywords/energy-minimization","display_name":"Energy minimization","score":0.4251975417137146},{"id":"https://openalex.org/keywords/statistical-physics","display_name":"Statistical physics","score":0.3632426857948303},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.3481794595718384},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.25846654176712036},{"id":"https://openalex.org/keywords/chemistry","display_name":"Chemistry","score":0.18361890316009521},{"id":"https://openalex.org/keywords/computational-chemistry","display_name":"Computational chemistry","score":0.15583348274230957}],"concepts":[{"id":"https://openalex.org/C123370116","wikidata":"https://www.wikidata.org/wiki/Q1424540","display_name":"Tabu search","level":2,"score":0.6296062469482422},{"id":"https://openalex.org/C18051474","wikidata":"https://www.wikidata.org/wiki/Q899656","display_name":"Protein structure prediction","level":3,"score":0.6001931428909302},{"id":"https://openalex.org/C135320971","wikidata":"https://www.wikidata.org/wiki/Q1868524","display_name":"Local search (optimization)","level":2,"score":0.5490708947181702},{"id":"https://openalex.org/C185798385","wikidata":"https://www.wikidata.org/wiki/Q1161707","display_name":"Benchmark (surveying)","level":2,"score":0.5305419564247131},{"id":"https://openalex.org/C2777303404","wikidata":"https://www.wikidata.org/wiki/Q759757","display_name":"Convergence (economics)","level":2,"score":0.4975917637348175},{"id":"https://openalex.org/C32598905","wikidata":"https://www.wikidata.org/wiki/Q6497130","display_name":"Lattice protein","level":3,"score":0.4945811927318573},{"id":"https://openalex.org/C2781204021","wikidata":"https://www.wikidata.org/wiki/Q6497091","display_name":"Lattice (music)","level":2,"score":0.49405649304389954},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.4890936017036438},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.4884573519229889},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.46686363220214844},{"id":"https://openalex.org/C2164484","wikidata":"https://www.wikidata.org/wiki/Q5170150","display_name":"Core (optical fiber)","level":2,"score":0.4623791575431824},{"id":"https://openalex.org/C14961307","wikidata":"https://www.wikidata.org/wiki/Q5377176","display_name":"Energy minimization","level":2,"score":0.4251975417137146},{"id":"https://openalex.org/C121864883","wikidata":"https://www.wikidata.org/wiki/Q677916","display_name":"Statistical physics","level":1,"score":0.3632426857948303},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.3481794595718384},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.25846654176712036},{"id":"https://openalex.org/C185592680","wikidata":"https://www.wikidata.org/wiki/Q2329","display_name":"Chemistry","level":0,"score":0.18361890316009521},{"id":"https://openalex.org/C147597530","wikidata":"https://www.wikidata.org/wiki/Q369472","display_name":"Computational chemistry","level":1,"score":0.15583348274230957},{"id":"https://openalex.org/C50522688","wikidata":"https://www.wikidata.org/wiki/Q189833","display_name":"Economic growth","level":1,"score":0.0},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.0},{"id":"https://openalex.org/C24890656","wikidata":"https://www.wikidata.org/wiki/Q82811","display_name":"Acoustics","level":1,"score":0.0},{"id":"https://openalex.org/C205649164","wikidata":"https://www.wikidata.org/wiki/Q1071","display_name":"Geography","level":0,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C13280743","wikidata":"https://www.wikidata.org/wiki/Q131089","display_name":"Geodesy","level":1,"score":0.0},{"id":"https://openalex.org/C76155785","wikidata":"https://www.wikidata.org/wiki/Q418","display_name":"Telecommunications","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008962","descriptor_name":"Models, Theoretical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011487","descriptor_name":"Protein Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057927","descriptor_name":"Hydrophobic and Hydrophilic Interactions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-14-s2-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s2-s16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S2-S16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23368706","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23368706","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:eprints.vu.edu.au:38560","is_oa":true,"landing_page_url":"https://vuir.vu.edu.au/38560/","pdf_url":"https://vuir.vu.edu.au/38560/1/1471-2105-14-S2-S16.pdf","source":{"id":"https://openalex.org/S4306400215","display_name":"Victoria University Research Repository (Victoria University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I41156924","host_organization_name":"Victoria University of Wellington","host_organization_lineage":["https://openalex.org/I41156924"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Conference or Workshop Item"},{"id":"pmh:oai:research-repository.griffith.edu.au:10072/53603","is_oa":true,"landing_page_url":"http://hdl.handle.net/10072/53603","pdf_url":"http://hdl.handle.net/10072/53603","source":{"id":"https://openalex.org/S4306402548","display_name":"Griffith Research Online (Griffith University, Queensland, Australia)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I11701301","host_organization_name":"Griffith University","host_organization_lineage":["https://openalex.org/I11701301"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Conference output"},{"id":"pmh:oai:doaj.org/article:4b7d950601594d25b1d410cee4a4b0a2","is_oa":false,"landing_page_url":"https://doaj.org/article/4b7d950601594d25b1d410cee4a4b0a2","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 14, Iss Suppl 2, p S16 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2552330","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3549848","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s2-s16","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s2-s16","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S2-S16","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6399999856948853,"id":"https://metadata.un.org/sdg/7","display_name":"Affordable and clean energy"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310369","display_name":"National ICT Australia","ror":"https://ror.org/03q397159"},{"id":"https://openalex.org/F4320320981","display_name":"Griffith University","ror":"https://ror.org/02sc3r913"}],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1977453933.pdf"},"referenced_works_count":40,"referenced_works":["https://openalex.org/W83406085","https://openalex.org/W113688923","https://openalex.org/W123766325","https://openalex.org/W1539892855","https://openalex.org/W1548178570","https://openalex.org/W1564001275","https://openalex.org/W1973897761","https://openalex.org/W1984527736","https://openalex.org/W2013205100","https://openalex.org/W2019158263","https://openalex.org/W2030955117","https://openalex.org/W2033475723","https://openalex.org/W2045777307","https://openalex.org/W2070292124","https://openalex.org/W2077390161","https://openalex.org/W2080382112","https://openalex.org/W2088025175","https://openalex.org/W2100356383","https://openalex.org/W2104670598","https://openalex.org/W2121876872","https://openalex.org/W2124848384","https://openalex.org/W2129469300","https://openalex.org/W2137105118","https://openalex.org/W2139415631","https://openalex.org/W2144981983","https://openalex.org/W2154811699","https://openalex.org/W2156381947","https://openalex.org/W2159130720","https://openalex.org/W2162042205","https://openalex.org/W2163333444","https://openalex.org/W2171283513","https://openalex.org/W2216040507","https://openalex.org/W2339500526","https://openalex.org/W2611927968","https://openalex.org/W3023334178","https://openalex.org/W4246598646","https://openalex.org/W4252178616","https://openalex.org/W4254442549","https://openalex.org/W4285719527","https://openalex.org/W4406046522"],"related_works":["https://openalex.org/W1533229056","https://openalex.org/W2519041592","https://openalex.org/W1979763505","https://openalex.org/W2726888863","https://openalex.org/W1555693598","https://openalex.org/W200248288","https://openalex.org/W2344044609","https://openalex.org/W2158562723","https://openalex.org/W1787433968","https://openalex.org/W1968503485"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein":[1],"structure":[2,29,39,46,71,108,169],"prediction":[3,30],"is":[4,57],"an":[5],"important":[6],"but":[7],"unsolved":[8],"problem":[9],"in":[10],"biological":[11],"science.":[12],"Predicted":[13],"structures":[14],"vary":[15],"much":[16],"with":[17,72],"energy":[18,36,50],"functions":[19],"and":[20,41,122],"structure-mapping":[21],"spaces.":[22],"In":[23,79],"our":[24,142,156],"simplified":[25,167],"ab":[26],"initio":[27],"protein":[28,149,168],"methods,":[31],"we":[32,84],"use":[33],"hydrophobic-polar":[34],"(HP)":[35],"model":[37],"for":[38,45,59,166],"evaluation,":[40],"3-dimensional":[42],"face-centred-cubic":[43],"lattice":[44],"mapping.":[47],"For":[48],"HP":[49],"model,":[51],"developing":[52],"a":[53,69,86,99,110,131,145],"compact":[54],"hydrophobic-core":[55,112],"(H-core)":[56],"essential":[58],"the":[60,63,73,107,161,175,178],"progress":[61],"of":[62,147,177],"search.":[64,95],"The":[65,151],"H-core":[66,101],"helps":[67],"find":[68],"stable":[70],"lowest":[74],"possible":[75],"free":[76],"energy.":[77],"RESULTS:":[78],"order":[80],"to":[81,118,124,135],"build":[82],"H-cores,":[83],"present":[85],"new":[87],"Spiral":[88],"Search":[89],"algorithm":[90,97,159],"based":[91],"on":[92,144],"tabu-guided":[93],"local":[94,163],"Our":[96],"uses":[98],"novel":[100,132],"directed":[102],"guidance":[103],"heuristic":[104],"that":[105,155],"squeezes":[106],"around":[109],"dynamic":[111],"centre.":[113],"We":[114,128,139,171],"applied":[115],"random":[116],"walks":[117],"break":[119],"premature":[120],"H-cores":[121],"thus":[123],"avoid":[125],"early":[126],"convergence.":[127],"also":[129,172],"used":[130],"relay-restart":[133],"technique":[134],"handle":[136],"stagnation.":[137],"CONCLUSIONS:":[138],"have":[140],"tested":[141],"algorithms":[143,165],"set":[146],"benchmark":[148],"sequences.":[150],"experimental":[152],"results":[153],"show":[154,174],"spiral":[157],"search":[158,164],"outperforms":[160],"state-of-the-art":[162],"prediction.":[170],"experimentally":[173],"effectiveness":[176],"relay-restart.":[179]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":7},{"year":2013,"cited_by_count":5}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
