{"id":"https://openalex.org/W2145247721","doi":"https://doi.org/10.1186/1471-2105-14-s19-s4","title":"Visual cavity analysis in molecular simulations","display_name":"Visual cavity analysis in molecular simulations","publication_year":2013,"publication_date":"2013-11-01","ids":{"openalex":"https://openalex.org/W2145247721","doi":"https://doi.org/10.1186/1471-2105-14-s19-s4","mag":"2145247721","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564409"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s19-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025345988","display_name":"J\u00falius Parulek","orcid":null},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":true,"raw_author_name":"Julius Parulek","raw_affiliation_strings":["Department of Informatics, University of Bergen, Norway","Department of Informatics, University of Bergen, Norway,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Informatics, University of Bergen, Norway,","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5065040154","display_name":"\u00c7a\u011fatay Turkay","orcid":"https://orcid.org/0000-0001-6788-251X"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Cagatay Turkay","raw_affiliation_strings":["Department of Informatics, University of Bergen, Norway","Department of Informatics, University of Bergen, Norway,"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Department of Informatics, University of Bergen, Norway,","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5090274388","display_name":"Nathalie Reuter","orcid":"https://orcid.org/0000-0002-3649-7675"},"institutions":[{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["NO"],"is_corresponding":false,"raw_author_name":"Nathalie Reuter","raw_affiliation_strings":["CBU, University of Bergen, Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CBU, University of Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5022294742","display_name":"Ivan Viola","orcid":"https://orcid.org/0000-0003-4248-6574"},"institutions":[{"id":"https://openalex.org/I145847075","display_name":"TU Wien","ror":"https://ror.org/04d836q62","country_code":"AT","type":"education","lineage":["https://openalex.org/I145847075"]},{"id":"https://openalex.org/I4432739","display_name":"University of Bergen","ror":"https://ror.org/03zga2b32","country_code":"NO","type":"education","lineage":["https://openalex.org/I4432739"]}],"countries":["AT","NO"],"is_corresponding":false,"raw_author_name":"Ivan Viola","raw_affiliation_strings":["Department of Informatics, University of Bergen, Norway","Vienna University of Technology, Austria","Vienna University of Technology, , Austria","Department of Informatics, University of Bergen, , Norway"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Informatics, University of Bergen, Norway","institution_ids":["https://openalex.org/I4432739"]},{"raw_affiliation_string":"Vienna University of Technology, Austria","institution_ids":["https://openalex.org/I145847075"]},{"raw_affiliation_string":"Vienna University of Technology, , Austria","institution_ids":["https://openalex.org/I145847075"]},{"raw_affiliation_string":"Department of Informatics, University of Bergen, , Norway","institution_ids":["https://openalex.org/I4432739"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5025345988"],"corresponding_institution_ids":["https://openalex.org/I4432739"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.7884,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.85062285,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"S19","first_page":"S4","last_page":"S4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9965999722480774,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.9962000250816345,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10540","display_name":"Advanced Fluorescence Microscopy Techniques","score":0.9919999837875366,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biomolecule","display_name":"Biomolecule","score":0.6144238114356995},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5254361033439636},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.522826075553894},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.4937003552913666},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4426971971988678},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.37712347507476807},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.2622653543949127},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.24629992246627808},{"id":"https://openalex.org/keywords/materials-science","display_name":"Materials science","score":0.2326640784740448},{"id":"https://openalex.org/keywords/nanotechnology","display_name":"Nanotechnology","score":0.23264384269714355}],"concepts":[{"id":"https://openalex.org/C49853544","wikidata":"https://www.wikidata.org/wiki/Q206229","display_name":"Biomolecule","level":2,"score":0.6144238114356995},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5254361033439636},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.522826075553894},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.4937003552913666},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4426971971988678},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.37712347507476807},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.2622653543949127},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.24629992246627808},{"id":"https://openalex.org/C192562407","wikidata":"https://www.wikidata.org/wiki/Q228736","display_name":"Materials science","level":0,"score":0.2326640784740448},{"id":"https://openalex.org/C171250308","wikidata":"https://www.wikidata.org/wiki/Q11468","display_name":"Nanotechnology","level":1,"score":0.23264384269714355},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000596","descriptor_name":"Amino Acids","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001665","descriptor_name":"Binding Sites","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008024","descriptor_name":"Ligands","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008958","descriptor_name":"Models, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053146","descriptor_name":"Myeloblastin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053146","descriptor_name":"Myeloblastin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D053146","descriptor_name":"Myeloblastin","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D062105","descriptor_name":"Molecular Docking Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-s19-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564409","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564409","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:openaccess.city.ac.uk:3614","is_oa":false,"landing_page_url":"https://openaccess.city.ac.uk/view/creators_id/cagatay=2Eturkay=2E1.html>,","pdf_url":null,"source":{"id":"https://openalex.org/S4306401940","display_name":"City Research Online (City University London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I180825142","host_organization_name":"City, University of London","host_organization_lineage":["https://openalex.org/I180825142"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":null,"raw_type":"Article"},{"id":"pmh:oai:bora.uib.no:1956/8305","is_oa":true,"landing_page_url":"http://hdl.handle.net/1956/8305","pdf_url":null,"source":{"id":"https://openalex.org/S4306400085","display_name":"Bergen Open Research Archive (BORA) (University of Bergen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4432739","host_organization_name":"University of Bergen","host_organization_lineage":["https://openalex.org/I4432739"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"S4","raw_type":null},{"id":"pmh:oai:europepmc.org:2974732","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3980935","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s19-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2196299318","display_name":null,"funder_award_id":"218023","funder_id":"https://openalex.org/F4320323299","funder_display_name":"Norges Forskningsr\u00e5d"},{"id":"https://openalex.org/G8424453579","display_name":"Visual Computing: Illustrative Visualization","funder_award_id":"VRG11-010","funder_id":"https://openalex.org/F4320321003","funder_display_name":"Vienna Science and Technology Fund"}],"funders":[{"id":"https://openalex.org/F4320321003","display_name":"Vienna Science and Technology Fund","ror":"https://ror.org/01f9mc681"},{"id":"https://openalex.org/F4320323299","display_name":"Norges Forskningsr\u00e5d","ror":"https://ror.org/00epmv149"},{"id":"https://openalex.org/F4320323898","display_name":"Bergens Forskningsstiftelse","ror":"https://ror.org/04efaep75"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145247721.pdf","grobid_xml":"https://content.openalex.org/works/W2145247721.grobid-xml"},"referenced_works_count":36,"referenced_works":["https://openalex.org/W1503550591","https://openalex.org/W1753524162","https://openalex.org/W1963821710","https://openalex.org/W1965680834","https://openalex.org/W1989519540","https://openalex.org/W1993244675","https://openalex.org/W2004360551","https://openalex.org/W2005120335","https://openalex.org/W2006930542","https://openalex.org/W2022993040","https://openalex.org/W2023734581","https://openalex.org/W2028753963","https://openalex.org/W2034542871","https://openalex.org/W2039181331","https://openalex.org/W2043901383","https://openalex.org/W2058207803","https://openalex.org/W2063831812","https://openalex.org/W2067963143","https://openalex.org/W2099407246","https://openalex.org/W2104441030","https://openalex.org/W2105902442","https://openalex.org/W2128934301","https://openalex.org/W2131080603","https://openalex.org/W2141742950","https://openalex.org/W2150981663","https://openalex.org/W2152167878","https://openalex.org/W2154069299","https://openalex.org/W2162166182","https://openalex.org/W2169113748","https://openalex.org/W2169242540","https://openalex.org/W2177731497","https://openalex.org/W2229412420","https://openalex.org/W2244686166","https://openalex.org/W2284871597","https://openalex.org/W3037896947","https://openalex.org/W4233857083"],"related_works":["https://openalex.org/W2367089784","https://openalex.org/W4281383848","https://openalex.org/W2344707987","https://openalex.org/W3021795417","https://openalex.org/W3182059148","https://openalex.org/W2914491564","https://openalex.org/W2028396431","https://openalex.org/W4386497600","https://openalex.org/W2073308043","https://openalex.org/W2753855002"],"abstract_inverted_index":{"Molecular":[0],"surfaces":[1],"provide":[2],"a":[3,21,26,111],"useful":[4],"mean":[5],"for":[6],"analyzing":[7],"interactions":[8],"between":[9],"biomolecules;":[10],"such":[11],"as":[12],"identification":[13],"and":[14,37,43,57,72,109],"characterization":[15],"of":[16,85,96,99],"ligand":[17],"binding":[18,32,48],"sites":[19,49],"to":[20,93,115],"host":[22],"macromolecule.":[23],"We":[24,60,89],"present":[25],"novel":[27],"technique,":[28],"which":[29],"extracts":[30],"potential":[31,113],"sites,":[33],"represented":[34],"by":[35,40,44],"cavities,":[36],"characterize":[38],"them":[39],"3D":[41],"graphs":[42,81],"amino":[45,74],"acids.":[46,75],"The":[47],"are":[50],"extracted":[51],"using":[52],"an":[53,62],"implicit":[54],"function":[55],"sampling":[56],"graph":[58,70],"algorithms.":[59],"propose":[61],"advanced":[63],"cavity":[64,114],"exploration":[65],"technique":[66],"based":[67],"on":[68],"the":[69,80,83,86,94,105],"parameters":[71],"associated":[73],"Additionally,":[76],"we":[77,103],"interactively":[78],"visualize":[79],"in":[82],"context":[84],"molecular":[87],"surface.":[88],"apply":[90],"our":[91],"method":[92],"analysis":[95],"MD":[97],"simulations":[98],"Proteinase":[100],"3,":[101],"where":[102],"verify":[104],"previously":[106],"described":[107],"cavities":[108],"suggest":[110],"new":[112],"be":[116],"studied.":[117]},"counts_by_year":[{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
