{"id":"https://openalex.org/W2135306251","doi":"https://doi.org/10.1186/1471-2105-14-s19-s3","title":"enRoute: dynamic path extraction from biological pathway maps for exploring heterogeneous experimental datasets","display_name":"enRoute: dynamic path extraction from biological pathway maps for exploring heterogeneous experimental datasets","publication_year":2013,"publication_date":"2013-11-01","ids":{"openalex":"https://openalex.org/W2135306251","doi":"https://doi.org/10.1186/1471-2105-14-s19-s3","mag":"2135306251","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564375"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s19-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5003116261","display_name":"Christian Partl","orcid":"https://orcid.org/0009-0005-4039-3392"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":true,"raw_author_name":"Christian Partl","raw_affiliation_strings":["Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","[Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria]"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"[Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria]","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031057530","display_name":"Alexander Lex","orcid":"https://orcid.org/0000-0001-6930-5468"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]},{"id":"https://openalex.org/I136199984","display_name":"Harvard University","ror":"https://ror.org/03vek6s52","country_code":"US","type":"education","lineage":["https://openalex.org/I136199984"]}],"countries":["AT","US"],"is_corresponding":false,"raw_author_name":"Alexander Lex","raw_affiliation_strings":["Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","Harvard School of Engineering and Applied Sciences, Visual Computing Group, 33 Oxford Street, MA, 02138, Cambridge, USA","Harvard School of Engineering and Applied Sciences, Visual Computing Group, Cambridge, USA","Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"Harvard School of Engineering and Applied Sciences, Visual Computing Group, 33 Oxford Street, MA, 02138, Cambridge, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Harvard School of Engineering and Applied Sciences, Visual Computing Group, Cambridge, USA","institution_ids":["https://openalex.org/I136199984"]},{"raw_affiliation_string":"Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5042080340","display_name":"Marc Streit","orcid":"https://orcid.org/0000-0001-9186-2092"},"institutions":[{"id":"https://openalex.org/I121883995","display_name":"Johannes Kepler University of Linz","ror":"https://ror.org/052r2xn60","country_code":"AT","type":"education","lineage":["https://openalex.org/I121883995"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Marc Streit","raw_affiliation_strings":["Johannes Kepler University Linz, Institute of Computer Graphics, Altenberger Stra\u00dfe 69, 4040, Linz, Austria","Johannes Kepler University Linz, Institute of Computer Graphics, Linz, Austria"],"affiliations":[{"raw_affiliation_string":"Johannes Kepler University Linz, Institute of Computer Graphics, Altenberger Stra\u00dfe 69, 4040, Linz, Austria","institution_ids":["https://openalex.org/I121883995"]},{"raw_affiliation_string":"Johannes Kepler University Linz, Institute of Computer Graphics, Linz, Austria","institution_ids":["https://openalex.org/I121883995"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031236945","display_name":"Denis Kalkofen","orcid":"https://orcid.org/0000-0002-0359-206X"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Denis Kalkofen","raw_affiliation_strings":["Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","[Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria]"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"[Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria]","institution_ids":["https://openalex.org/I4092182"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5037132971","display_name":"Karl Kashofer","orcid":"https://orcid.org/0000-0002-5803-4014"},"institutions":[{"id":"https://openalex.org/I202276237","display_name":"Medical University of Graz","ror":"https://ror.org/02n0bts35","country_code":"AT","type":"education","lineage":["https://openalex.org/I202276237"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Karl Kashofer","raw_affiliation_strings":["Medical University of Graz, Institute of Pathology, Auenbruggerplatz 25, 8036, Graz, Austria","Medical University of Graz Institute of Pathology Graz Austria"],"affiliations":[{"raw_affiliation_string":"Medical University of Graz, Institute of Pathology, Auenbruggerplatz 25, 8036, Graz, Austria","institution_ids":["https://openalex.org/I202276237"]},{"raw_affiliation_string":"Medical University of Graz Institute of Pathology Graz Austria","institution_ids":["https://openalex.org/I202276237"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5048047909","display_name":"Dieter Schmalstieg","orcid":"https://orcid.org/0000-0003-2813-2235"},"institutions":[{"id":"https://openalex.org/I4092182","display_name":"Graz University of Technology","ror":"https://ror.org/00d7xrm67","country_code":"AT","type":"education","lineage":["https://openalex.org/I4092182"]}],"countries":["AT"],"is_corresponding":false,"raw_author_name":"Dieter Schmalstieg","raw_affiliation_strings":["Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","[Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria]"],"affiliations":[{"raw_affiliation_string":"Graz University of Technology, Institute for Computer Graphics and Vision, Inffeldgasse 16, 8010, Graz, Austria","institution_ids":["https://openalex.org/I4092182"]},{"raw_affiliation_string":"[Graz University of Technology, Institute for Computer Graphics and Vision, Graz, Austria]","institution_ids":["https://openalex.org/I4092182"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5003116261"],"corresponding_institution_ids":["https://openalex.org/I4092182"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.1978,"has_fulltext":true,"cited_by_count":26,"citation_normalized_percentile":{"value":0.79006512,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"S19","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9987000226974487,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.982200026512146,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.9819999933242798,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7465641498565674},{"id":"https://openalex.org/keywords/kegg","display_name":"KEGG","score":0.6711380481719971},{"id":"https://openalex.org/keywords/path","display_name":"Path (computing)","score":0.5681109428405762},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.5552904009819031},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5346217751502991},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.5171510577201843},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.4670630395412445},{"id":"https://openalex.org/keywords/network-topology","display_name":"Network topology","score":0.4494379460811615},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.44883981347084045},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.38353580236434937},{"id":"https://openalex.org/keywords/topology","display_name":"Topology (electrical circuits)","score":0.3218182921409607},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.14982911944389343},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.10255888104438782}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7465641498565674},{"id":"https://openalex.org/C152724338","wikidata":"https://www.wikidata.org/wiki/Q909442","display_name":"KEGG","level":5,"score":0.6711380481719971},{"id":"https://openalex.org/C2777735758","wikidata":"https://www.wikidata.org/wiki/Q817765","display_name":"Path (computing)","level":2,"score":0.5681109428405762},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.5552904009819031},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5346217751502991},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.5171510577201843},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.4670630395412445},{"id":"https://openalex.org/C199845137","wikidata":"https://www.wikidata.org/wiki/Q145490","display_name":"Network topology","level":2,"score":0.4494379460811615},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.44883981347084045},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.38353580236434937},{"id":"https://openalex.org/C184720557","wikidata":"https://www.wikidata.org/wiki/Q7825049","display_name":"Topology (electrical circuits)","level":2,"score":0.3218182921409607},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.14982911944389343},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.10255888104438782},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-14-s19-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564375","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564375","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:http://openlib.tugraz.at/564996186e328","is_oa":true,"landing_page_url":"http://openlib.tugraz.at/564996186e328","pdf_url":null,"source":{"id":"https://openalex.org/S4306400660","display_name":"TUGraz OPEN Library (Graz University of Technology)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I4092182","host_organization_name":"Graz University of Technology","host_organization_lineage":["https://openalex.org/I4092182"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"","raw_type":null},{"id":"pmh:oai:europepmc.org:2974713","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3980897","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s19-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G1929210755","display_name":null,"funder_award_id":"J 3437-N15","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"},{"id":"https://openalex.org/G8654607920","display_name":"Visual Analysis of Heterogeneous Data using Semantic Subsets","funder_award_id":"J 3437","funder_id":"https://openalex.org/F4320321181","funder_display_name":"Austrian Science Fund"}],"funders":[{"id":"https://openalex.org/F4320321181","display_name":"Austrian Science Fund","ror":"https://ror.org/013tf3c58"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2135306251.pdf","grobid_xml":"https://content.openalex.org/works/W2135306251.grobid-xml"},"referenced_works_count":33,"referenced_works":["https://openalex.org/W1946371345","https://openalex.org/W1983359980","https://openalex.org/W1984418041","https://openalex.org/W1998767819","https://openalex.org/W2005773722","https://openalex.org/W2023098599","https://openalex.org/W2037746522","https://openalex.org/W2040676413","https://openalex.org/W2076799601","https://openalex.org/W2091789479","https://openalex.org/W2097285241","https://openalex.org/W2103963076","https://openalex.org/W2107139603","https://openalex.org/W2111495777","https://openalex.org/W2119494621","https://openalex.org/W2125748785","https://openalex.org/W2132881639","https://openalex.org/W2133298156","https://openalex.org/W2142913541","https://openalex.org/W2144333758","https://openalex.org/W2147053292","https://openalex.org/W2152621157","https://openalex.org/W2155405213","https://openalex.org/W2155843307","https://openalex.org/W2156424362","https://openalex.org/W2157316473","https://openalex.org/W2157348185","https://openalex.org/W2159147775","https://openalex.org/W2162601703","https://openalex.org/W2165253681","https://openalex.org/W2227557434","https://openalex.org/W4241876622","https://openalex.org/W4299298909"],"related_works":["https://openalex.org/W1964572291","https://openalex.org/W4387948744","https://openalex.org/W1987520879","https://openalex.org/W184793361","https://openalex.org/W2352732738","https://openalex.org/W2123060905","https://openalex.org/W2559588208","https://openalex.org/W4318778067","https://openalex.org/W1923384484","https://openalex.org/W3120676751"],"abstract_inverted_index":{"Jointly":[0],"analyzing":[1],"biological":[2,13],"pathway":[3,47,57,155,169],"maps":[4],"and":[5,19,96,119,143,182,200,233,256],"experimental":[6,99,121,188],"data":[7,100,122,189,252],"is":[8,158],"critical":[9],"for":[10,34,215],"understanding":[11],"how":[12],"processes":[14],"work":[15],"in":[16,85,175,261],"different":[17,21],"conditions":[18],"why":[20],"samples":[22],"exhibit":[23],"certain":[24],"characteristics.":[25],"This":[26,113],"joint":[27,139],"analysis,":[28],"however,":[29],"poses":[30],"a":[31,74,81,86,92,209,216,227],"significant":[32],"challenge":[33],"visualization.":[35],"Current":[36],"techniques":[37],"are":[38],"either":[39],"well":[40],"suited":[41],"to":[42,51,79,111,125],"visualize":[43],"large":[44,128,217],"amounts":[45,129],"of":[46,55,83,105,115,130,138,141,154,166,177,212,219,226,230,241,264],"node":[48,144],"attributes,":[49],"or":[50],"represent":[52],"the":[53,56,65,103,116,120,136,152,173,180,183,194,239,254,257,262],"topology":[54,142],"well,":[58],"but":[59],"do":[60],"not":[61,150],"accomplish":[62],"both":[63,207],"at":[64],"same":[66],"time.":[67],"To":[68,237],"address":[69],"this":[70,89,106,147],"we":[71,223],"introduce":[72],"enRoute,":[73,242],"technique":[75,174],"that":[76,206],"enables":[77],"analysts":[78,124],"specify":[80],"path":[82,90,108,118],"interest":[84],"pathway,":[87],"extract":[88],"into":[91],"separate,":[93],"linked":[94],"view,":[95],"show":[97],"detailed":[98],"associated":[101],"with":[102,160],"nodes":[104],"extracted":[107,117],"right":[109],"next":[110],"it.":[112],"juxtaposition":[114],"allows":[123],"simultaneously":[126],"investigate":[127],"potentially":[131],"heterogeneous":[132],"data,":[133],"thereby":[134],"solving":[135],"problem":[137],"analysis":[140],"attributes.":[145],"As":[146],"approach":[148],"does":[149],"modify":[151],"layout":[153],"maps,":[156],"it":[157],"compatible":[159],"arbitrary":[161],"graph":[162],"layouts,":[163],"including":[164],"those":[165],"hand-crafted,":[167],"image-based":[168],"maps.":[170],"We":[171,186],"demonstrate":[172],"context":[176,263],"pathways":[178],"from":[179,190,253],"KEGG":[181],"Wikipathways":[184],"databases.":[185],"apply":[187],"two":[191,246],"public":[192],"databases,":[193],"Cancer":[195,202],"Cell":[196],"Line":[197],"Encyclopedia":[198],"(CCLE)":[199],"The":[201],"Genome":[203],"Atlas":[204],"(TCGA)":[205],"contain":[208],"wide":[210],"variety":[211],"genomic":[213],"datasets":[214,260],"number":[218],"samples.":[220],"In":[221],"addition,":[222],"make":[224],"use":[225],"smaller":[228],"dataset":[229],"hepatocellular":[231,258],"carcinoma":[232,259],"common":[234],"xenograft":[235],"models.":[236],"verify":[238],"utility":[240],"domain":[243],"experts":[244],"conducted":[245],"case":[247],"studies":[248],"where":[249],"they":[250],"explore":[251],"CCLE":[255],"relevant":[265],"pathways.":[266]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
