{"id":"https://openalex.org/W2059272641","doi":"https://doi.org/10.1186/1471-2105-14-s19-s2","title":"iVUN: interactive Visualization of Uncertain biochemical reaction Networks","display_name":"iVUN: interactive Visualization of Uncertain biochemical reaction Networks","publication_year":2013,"publication_date":"2013-11-01","ids":{"openalex":"https://openalex.org/W2059272641","doi":"https://doi.org/10.1186/1471-2105-14-s19-s2","mag":"2059272641","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564335"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s19-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090876108","display_name":"Corinna Vehlow","orcid":null},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Corinna Vehlow","raw_affiliation_strings":["Visualization Research Center (VISUS), University of Stuttgart, Allmandring 19, 70569, Stuttgart, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Visualization Research Center (VISUS), University of Stuttgart, Allmandring 19, 70569, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063254041","display_name":"Jan Hasenauer","orcid":"https://orcid.org/0000-0002-4935-3312"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Jan Hasenauer","raw_affiliation_strings":["Department of Mathematics, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstra\u00dfe 3, 85748, Garching, Germany","Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstra\u00dfe 3, 85748, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5036580688","display_name":"Andrei Kramer","orcid":"https://orcid.org/0000-0002-3828-6978"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andrei Kramer","raw_affiliation_strings":["Institute for Systems Theory and Automatic Control, University of Stuttgart, Pfaffenwaldring 9, 70550, Stuttgart, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Theory and Automatic Control, University of Stuttgart, Pfaffenwaldring 9, 70550, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063153590","display_name":"Andreas Raue","orcid":"https://orcid.org/0000-0002-9198-2489"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]},{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Andreas Raue","raw_affiliation_strings":["Institute for Physics, University of Freiburg, Hermann-Herder Stra\u00dfe 3, 79104, Freiburg, Germany","Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Physics, University of Freiburg, Hermann-Herder Stra\u00dfe 3, 79104, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025232222","display_name":"Sabine Hug","orcid":"https://orcid.org/0000-0002-1736-9096"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Sabine Hug","raw_affiliation_strings":["Department of Mathematics, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstra\u00dfe 3, 85748, Garching, Germany","Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstra\u00dfe 3, 85748, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052831097","display_name":"Jens Timmer","orcid":"https://orcid.org/0000-0003-4517-1383"},"institutions":[{"id":"https://openalex.org/I161046081","display_name":"University of Freiburg","ror":"https://ror.org/0245cg223","country_code":"DE","type":"education","lineage":["https://openalex.org/I161046081"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jens Timmer","raw_affiliation_strings":["BIOSS Centre for Biological Signalling Studies, University of Freiburg, Sch\u00e4nzlestra\u00dfe 18, 79104, Freiburg, Germany","Freiburg Institute for Advanced Studies (FRIAS), University of Freiburg, Albertstra\u00dfe 19, 79104, Freiburg, Germany","Institute for Physics, University of Freiburg, Hermann-Herder Stra\u00dfe 3, 79104, Freiburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"BIOSS Centre for Biological Signalling Studies, University of Freiburg, Sch\u00e4nzlestra\u00dfe 18, 79104, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Freiburg Institute for Advanced Studies (FRIAS), University of Freiburg, Albertstra\u00dfe 19, 79104, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]},{"raw_affiliation_string":"Institute for Physics, University of Freiburg, Hermann-Herder Stra\u00dfe 3, 79104, Freiburg, Germany","institution_ids":["https://openalex.org/I161046081"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5074898503","display_name":"Nicole Radde","orcid":"https://orcid.org/0000-0002-5145-0058"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Nicole Radde","raw_affiliation_strings":["Institute for Systems Theory and Automatic Control, University of Stuttgart, Pfaffenwaldring 9, 70550, Stuttgart, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Systems Theory and Automatic Control, University of Stuttgart, Pfaffenwaldring 9, 70550, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5083128670","display_name":"Fabian J. Theis","orcid":"https://orcid.org/0000-0002-2419-1943"},"institutions":[{"id":"https://openalex.org/I3018134672","display_name":"Helmholtz Zentrum M\u00fcnchen","ror":"https://ror.org/00cfam450","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672"]},{"id":"https://openalex.org/I4210100097","display_name":"Institute of Bioinformatics and Systems Biology","ror":"https://ror.org/0127fwn18","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I3018134672","https://openalex.org/I4210100097"]},{"id":"https://openalex.org/I62916508","display_name":"Technical University of Munich","ror":"https://ror.org/02kkvpp62","country_code":"DE","type":"education","lineage":["https://openalex.org/I62916508"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fabian J Theis","raw_affiliation_strings":["Department of Mathematics, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstra\u00dfe 3, 85748, Garching, Germany","Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Mathematics, Technische Universit\u00e4t M\u00fcnchen, Boltzmannstra\u00dfe 3, 85748, Garching, Germany","institution_ids":["https://openalex.org/I62916508"]},{"raw_affiliation_string":"Institute of Bioinformatics and Systems Biology, Helmholtz Zentrum M\u00fcnchen, Ingolst\u00e4dter Landstra\u00dfe 1, 85764, Neuherberg, Germany","institution_ids":["https://openalex.org/I3018134672","https://openalex.org/I4210100097"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5073619125","display_name":"Daniel Weiskopf","orcid":"https://orcid.org/0000-0003-1174-1026"},"institutions":[{"id":"https://openalex.org/I100066346","display_name":"University of Stuttgart","ror":"https://ror.org/04vnq7t77","country_code":"DE","type":"education","lineage":["https://openalex.org/I100066346"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Daniel Weiskopf","raw_affiliation_strings":["Visualization Research Center (VISUS), University of Stuttgart, Allmandring 19, 70569, Stuttgart, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Visualization Research Center (VISUS), University of Stuttgart, Allmandring 19, 70569, Stuttgart, Germany","institution_ids":["https://openalex.org/I100066346"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":5,"corresponding_author_ids":["https://openalex.org/A5063254041","https://openalex.org/A5090876108"],"corresponding_institution_ids":["https://openalex.org/I100066346","https://openalex.org/I3018134672","https://openalex.org/I4210100097","https://openalex.org/I62916508"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.286,"has_fulltext":true,"cited_by_count":10,"citation_normalized_percentile":{"value":0.83109567,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"14","issue":"S19","first_page":"S2","last_page":"S2"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.41519999504089355,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10799","display_name":"Data Visualization and Analytics","score":0.41519999504089355,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.34310001134872437,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.07169999927282333,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7423250079154968},{"id":"https://openalex.org/keywords/visualization","display_name":"Visualization","score":0.7050971984863281},{"id":"https://openalex.org/keywords/biological-network","display_name":"Biological network","score":0.6087026596069336},{"id":"https://openalex.org/keywords/biological-data","display_name":"Biological data","score":0.5705332159996033},{"id":"https://openalex.org/keywords/graph-drawing","display_name":"Graph drawing","score":0.553777277469635},{"id":"https://openalex.org/keywords/visual-analytics","display_name":"Visual analytics","score":0.5530539155006409},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.542169988155365},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.48229411244392395},{"id":"https://openalex.org/keywords/node","display_name":"Node (physics)","score":0.45583677291870117},{"id":"https://openalex.org/keywords/data-visualization","display_name":"Data visualization","score":0.42032352089881897},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.36506134271621704},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.15112629532814026}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7423250079154968},{"id":"https://openalex.org/C36464697","wikidata":"https://www.wikidata.org/wiki/Q451553","display_name":"Visualization","level":2,"score":0.7050971984863281},{"id":"https://openalex.org/C28225019","wikidata":"https://www.wikidata.org/wiki/Q4915005","display_name":"Biological network","level":2,"score":0.6087026596069336},{"id":"https://openalex.org/C201797286","wikidata":"https://www.wikidata.org/wiki/Q4914986","display_name":"Biological data","level":2,"score":0.5705332159996033},{"id":"https://openalex.org/C112953755","wikidata":"https://www.wikidata.org/wiki/Q739462","display_name":"Graph drawing","level":3,"score":0.553777277469635},{"id":"https://openalex.org/C59732488","wikidata":"https://www.wikidata.org/wiki/Q2528440","display_name":"Visual analytics","level":3,"score":0.5530539155006409},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.542169988155365},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.48229411244392395},{"id":"https://openalex.org/C62611344","wikidata":"https://www.wikidata.org/wiki/Q1062658","display_name":"Node (physics)","level":2,"score":0.45583677291870117},{"id":"https://openalex.org/C172367668","wikidata":"https://www.wikidata.org/wiki/Q6504956","display_name":"Data visualization","level":3,"score":0.42032352089881897},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.36506134271621704},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.15112629532814026},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.0},{"id":"https://openalex.org/C127413603","wikidata":"https://www.wikidata.org/wiki/Q11023","display_name":"Engineering","level":0,"score":0.0},{"id":"https://openalex.org/C66938386","wikidata":"https://www.wikidata.org/wiki/Q633538","display_name":"Structural engineering","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003196","descriptor_name":"Computer Graphics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008954","descriptor_name":"Models, Biological","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008956","descriptor_name":"Models, Chemical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D035501","descriptor_name":"Uncertainty","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053858","descriptor_name":"Metabolic Networks and Pathways","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-s19-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564335","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564335","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:opus-zb.helmholtz-muenchen.de:28843","is_oa":true,"landing_page_url":"https://push-zb.helmholtz-muenchen.de/frontdoor.php?source_opus=28843","pdf_url":null,"source":{"id":"https://openalex.org/S4377196115","display_name":"Site cant be reached","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics 14:S2 (2013)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:4067946","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4067946","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:uni-augsburg.opus-bayern.de:113233","is_oa":true,"landing_page_url":"https://nbn-resolving.org/urn:nbn:de:bvb:384-opus4-1132339","pdf_url":null,"source":{"id":"https://openalex.org/S4306400930","display_name":"OPUS (Augsburg University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I119916105","host_organization_name":"Augsburg University","host_organization_lineage":["https://openalex.org/I119916105"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s19-s2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s19-s2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S19-S2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5299999713897705,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G1200370376","display_name":null,"funder_award_id":"EXC 294","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G2226624840","display_name":null,"funder_award_id":"0315766","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G3028935652","display_name":null,"funder_award_id":"EXC 294","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G523492319","display_name":null,"funder_award_id":"EXC 310","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G6039471144","display_name":null,"funder_award_id":"EXC 310/1","funder_id":"https://openalex.org/F4320325850","funder_display_name":"Universit\u00e4t Stuttgart"},{"id":"https://openalex.org/G6258772820","display_name":null,"funder_award_id":"0316042G","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"},{"id":"https://openalex.org/G6468402549","display_name":null,"funder_award_id":"EXC 310/1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7929977276","display_name":null,"funder_award_id":"0315494A","funder_id":"https://openalex.org/F4320321114","funder_display_name":"Bundesministerium f\u00fcr Bildung und Forschung"}],"funders":[{"id":"https://openalex.org/F4320310693","display_name":"Deutsches Krebsforschungszentrum","ror":"https://ror.org/04cdgtt98"},{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"},{"id":"https://openalex.org/F4320325850","display_name":"Universit\u00e4t Stuttgart","ror":"https://ror.org/04vnq7t77"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2059272641.pdf","grobid_xml":"https://content.openalex.org/works/W2059272641.grobid-xml"},"referenced_works_count":46,"referenced_works":["https://openalex.org/W105489431","https://openalex.org/W1512208174","https://openalex.org/W1594453896","https://openalex.org/W1607198972","https://openalex.org/W1946371345","https://openalex.org/W1972249602","https://openalex.org/W1972641242","https://openalex.org/W1979056373","https://openalex.org/W1979181404","https://openalex.org/W1980396726","https://openalex.org/W2014157009","https://openalex.org/W2038264484","https://openalex.org/W2039740901","https://openalex.org/W2046451925","https://openalex.org/W2070714765","https://openalex.org/W2084370588","https://openalex.org/W2085061065","https://openalex.org/W2094468738","https://openalex.org/W2102653059","https://openalex.org/W2108075477","https://openalex.org/W2112794562","https://openalex.org/W2114296887","https://openalex.org/W2114439422","https://openalex.org/W2117057692","https://openalex.org/W2125105192","https://openalex.org/W2126400389","https://openalex.org/W2128347847","https://openalex.org/W2131230954","https://openalex.org/W2133298156","https://openalex.org/W2147053292","https://openalex.org/W2154602420","https://openalex.org/W2155405213","https://openalex.org/W2157348185","https://openalex.org/W2158453355","https://openalex.org/W2168648059","https://openalex.org/W2485594181","https://openalex.org/W2610881169","https://openalex.org/W2757172740","https://openalex.org/W2797884766","https://openalex.org/W3140968660","https://openalex.org/W4205090601","https://openalex.org/W4238536215","https://openalex.org/W4238726034","https://openalex.org/W4246055527","https://openalex.org/W4255300382","https://openalex.org/W4302114717"],"related_works":["https://openalex.org/W2155492529","https://openalex.org/W4252504573","https://openalex.org/W4385510321","https://openalex.org/W2101315668","https://openalex.org/W3003523682","https://openalex.org/W2171298469","https://openalex.org/W2098027521","https://openalex.org/W4214598766","https://openalex.org/W2082199132","https://openalex.org/W1561795279"],"abstract_inverted_index":{"BACKGROUND:":[0],"Mathematical":[1],"models":[2,21,38],"are":[3,68,129],"nowadays":[4],"widely":[5],"used":[6,197],"to":[7,49,131,160,176,198,233],"describe":[8],"biochemical":[9,104,204],"reaction":[10,76,105,205],"networks.":[11],"One":[12],"of":[13,25,28,44,56,81,98,103,115,126,134,138,167,181,203,227],"the":[14,23,53,60,89,116,127,132,139,143,165,179,220,225,238,245],"main":[15],"reasons":[16],"for":[17,40,184,237],"this":[18],"is":[19,118,146],"that":[20,94,193,242],"facilitate":[22],"integration":[24],"a":[26,41,121,182],"multitude":[27],"different":[29,228],"data":[30,32],"and":[31,52,100,124,136,157,164,214],"types":[33],"using":[34],"parameter":[35],"estimation.":[36],"Thereby,":[37],"allow":[39],"holistic":[42],"understanding":[43],"biological":[45,82,246],"processes.":[46],"However,":[47],"due":[48],"measurement":[50],"noise":[51],"limited":[54],"amount":[55],"data,":[57],"uncertainties":[58,163,216],"in":[59],"model":[61,72,183],"parameters":[62],"should":[63],"be":[64,196,234],"considered":[65],"when":[66],"conclusions":[67],"drawn":[69],"from":[70],"estimated":[71],"attributes,":[73],"such":[74,151],"as":[75,120,152,217,219,248],"fluxes":[77],"or":[78],"transient":[79],"dynamics":[80,180],"species.":[83],"METHODS":[84],"AND":[85],"RESULTS:":[86],"We":[87],"developed":[88],"visual":[90],"analytics":[91],"system":[92],"iVUN":[93,175,194],"supports":[95],"uncertainty-aware":[96],"analysis":[97,166,240],"static":[99],"dynamic":[101],"attributes":[102,128,213],"networks":[106],"modeled":[107],"by":[108],"ordinary":[109],"differential":[110],"equations.":[111],"The":[112],"multivariate":[113],"graph":[114,144],"network":[117],"visualized":[119],"node-link":[122],"diagram,":[123],"statistics":[125],"mapped":[130],"color":[133],"nodes":[135],"links":[137],"graph.":[140],"In":[141,223],"addition,":[142],"view":[145],"linked":[147],"with":[148,244],"several":[149],"views,":[150],"line":[153],"plots,":[154,156],"scatter":[155],"correlation":[158],"matrices,":[159],"support":[161],"locating":[162],"their":[168,215],"time":[169],"dependencies.":[170],"As":[171],"demonstration,":[172],"we":[173],"use":[174],"quantitatively":[177],"analyze":[178],"Epo-induced":[185],"JAK2/STAT5":[186],"signaling.":[187],"CONCLUSION:":[188],"Our":[189],"case":[190],"study":[191,202],"showed":[192],"can":[195],"perform":[199],"an":[200],"in-depth":[201],"networks,":[206],"including":[207],"attribute":[208,221],"uncertainties,":[209],"correlations":[210],"between":[211],"these":[212],"well":[218],"dynamics.":[222],"particular,":[224],"linking":[226],"visualization":[229],"options":[230],"turned":[231],"out":[232],"highly":[235],"beneficial":[236],"complex":[239],"tasks":[241],"come":[243],"systems":[247],"presented":[249],"here.":[250]},"counts_by_year":[{"year":2021,"cited_by_count":1},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":1}],"updated_date":"2026-07-29T09:40:50.615796","created_date":"2025-10-10T00:00:00"}
