{"id":"https://openalex.org/W2148830285","doi":"https://doi.org/10.1186/1471-2105-14-s16-s10","title":"ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins","display_name":"ViralPhos: incorporating a recursively statistical method to predict phosphorylation sites on virus proteins","publication_year":2013,"publication_date":"2013-10-01","ids":{"openalex":"https://openalex.org/W2148830285","doi":"https://doi.org/10.1186/1471-2105-14-s16-s10","mag":"2148830285","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564381"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s16-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s16-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S16-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S16-S10","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101875147","display_name":"Kai\u2010Yao Huang","orcid":"https://orcid.org/0000-0001-9855-1035"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Kai-Yao Huang","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5022425747","display_name":"Cheng-Tsung Lu","orcid":null},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Cheng-Tsung Lu","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045801615","display_name":"Neil Arvin Breta\u00f1a","orcid":"https://orcid.org/0000-0003-4743-348X"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":false,"raw_author_name":"Neil Arvin Breta\u00f1a","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045675277","display_name":"Tzong-Yi Lee","orcid":"https://orcid.org/0000-0001-8475-7868"},"institutions":[{"id":"https://openalex.org/I99908691","display_name":"Yuan Ze University","ror":"https://ror.org/01fv1ds98","country_code":"TW","type":"education","lineage":["https://openalex.org/I99908691"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Tzong-Yi Lee","raw_affiliation_strings":["Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Science and Engineering, Yuan Ze University, Chung-Li, 320, Taiwan","institution_ids":["https://openalex.org/I99908691"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5008637858","display_name":"Tzu\u2010Hao Chang","orcid":"https://orcid.org/0000-0001-7011-3754"},"institutions":[{"id":"https://openalex.org/I47519274","display_name":"Taipei Medical University","ror":"https://ror.org/05031qk94","country_code":"TW","type":"education","lineage":["https://openalex.org/I47519274"]}],"countries":["TW"],"is_corresponding":true,"raw_author_name":"Tzu-Hao Chang","raw_affiliation_strings":["Graduate Institute of Biomedical Informatics, Taipei Medical University, Taipei, 110, Taiwan"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Graduate Institute of Biomedical Informatics, Taipei Medical University, Taipei, 110, Taiwan","institution_ids":["https://openalex.org/I47519274"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5008637858","https://openalex.org/A5045675277"],"corresponding_institution_ids":["https://openalex.org/I47519274","https://openalex.org/I99908691"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":1.3742,"has_fulltext":true,"cited_by_count":32,"citation_normalized_percentile":{"value":0.80922836,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"S16","first_page":"S10","last_page":"S10"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5289000272750854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.5289000272750854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1453000009059906,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.0868000015616417,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.7980380654335022},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.5944050550460815},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.558954119682312},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.5568218231201172},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5182037949562073},{"id":"https://openalex.org/keywords/virus","display_name":"Virus","score":0.5135753154754639},{"id":"https://openalex.org/keywords/threonine","display_name":"Threonine","score":0.494917094707489},{"id":"https://openalex.org/keywords/serine","display_name":"Serine","score":0.3924145996570587},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.3371574878692627},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.32578548789024353},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.23705050349235535}],"concepts":[{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.7980380654335022},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.5944050550460815},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.558954119682312},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.5568218231201172},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5182037949562073},{"id":"https://openalex.org/C2522874641","wikidata":"https://www.wikidata.org/wiki/Q808","display_name":"Virus","level":2,"score":0.5135753154754639},{"id":"https://openalex.org/C2775880066","wikidata":"https://www.wikidata.org/wiki/Q186521","display_name":"Threonine","level":4,"score":0.494917094707489},{"id":"https://openalex.org/C2776414213","wikidata":"https://www.wikidata.org/wiki/Q183290","display_name":"Serine","level":3,"score":0.3924145996570587},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.3371574878692627},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.32578548789024353},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.23705050349235535}],"mesh":[{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010770","descriptor_name":"Phosphotransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D014764","descriptor_name":"Viral Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015203","descriptor_name":"Reproducibility of Results","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-s16-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s16-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S16-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564381","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564381","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2850513","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3853219","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3853219","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3853219","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:localhost:987654321/47545","is_oa":false,"landing_page_url":"http://libir.tmu.edu.tw/handle/987654321/47545","pdf_url":null,"source":{"id":"https://openalex.org/S4406923063","display_name":"Taipei Medical University Repository","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"conference"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s16-s10","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s16-s10","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S16-S10","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/3","display_name":"Good health and well-being","score":0.7900000214576721}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2148830285.pdf","grobid_xml":"https://content.openalex.org/works/W2148830285.grobid-xml"},"referenced_works_count":39,"referenced_works":["https://openalex.org/W1570204439","https://openalex.org/W1966975236","https://openalex.org/W1969176200","https://openalex.org/W1970039616","https://openalex.org/W1973763912","https://openalex.org/W1983533964","https://openalex.org/W1984537356","https://openalex.org/W1988281953","https://openalex.org/W1995989434","https://openalex.org/W2000042427","https://openalex.org/W2015676507","https://openalex.org/W2034890309","https://openalex.org/W2048478321","https://openalex.org/W2055043387","https://openalex.org/W2058884235","https://openalex.org/W2071555141","https://openalex.org/W2075319133","https://openalex.org/W2099686283","https://openalex.org/W2104804534","https://openalex.org/W2109021234","https://openalex.org/W2110181121","https://openalex.org/W2111154506","https://openalex.org/W2121417968","https://openalex.org/W2129137060","https://openalex.org/W2129881449","https://openalex.org/W2130277691","https://openalex.org/W2133177319","https://openalex.org/W2134129243","https://openalex.org/W2135517348","https://openalex.org/W2135539857","https://openalex.org/W2142479026","https://openalex.org/W2148754173","https://openalex.org/W2153635508","https://openalex.org/W2154139219","https://openalex.org/W2154173127","https://openalex.org/W2158266834","https://openalex.org/W2166187656","https://openalex.org/W2166884712","https://openalex.org/W2170984138"],"related_works":["https://openalex.org/W2912581221","https://openalex.org/W2064910808","https://openalex.org/W2340742655","https://openalex.org/W1520436089","https://openalex.org/W1997601530","https://openalex.org/W1528988508","https://openalex.org/W2336510845","https://openalex.org/W1640595204","https://openalex.org/W4234251892","https://openalex.org/W1991804086"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,120,212,225],"phosphorylation":[2,26,53,69,78,156,187,223,236],"of":[3,19,25,70,93,135,233],"virus":[4,28,52,72,82,180,190,209,222,235],"proteins":[5,29,83],"by":[6],"host":[7,63],"kinases":[8,64,207],"is":[9,30,147,228],"linked":[10],"to":[11,16,34,110,149,178,219,230],"viral":[12],"replication.":[13],"This":[14],"leads":[15],"an":[17,132],"inhibition":[18],"normal":[20],"host-cell":[21],"functions.":[22],"Further":[23],"elucidation":[24],"in":[27,32,36,50],"required":[31],"order":[33],"aid":[35],"drug":[37],"design":[38],"and":[39,139,163,184,238],"treatment.":[40],"However,":[41],"only":[42],"a":[43,71,98,112,126,172,243],"few":[44],"studies":[45],"have":[46],"investigated":[47],"substrate":[48,118,181,195,214],"motifs":[49,96,183,196,215],"identifying":[51],"sites.":[54,224],"Additionally,":[55],"existing":[56],"bioinformatics":[57],"tool":[58],"do":[59],"not":[60],"consider":[61],"potential":[62,186,205,221],"that":[65,197],"may":[66],"initiate":[67],"the":[68,116,144],"protein.":[73],"RESULTS:":[74],"329":[75],"experimentally":[76],"verified":[77],"fragments":[79],"on":[80,189],"111":[81],"were":[84,89,107,123,216],"collected":[85],"from":[86],"virPTM.":[87],"These":[88],"clustered":[90],"into":[91],"subgroups":[92],"significantly":[94],"conserved":[95],"using":[97,125],"recursively":[99],"statistical":[100],"method.":[101],"Two-layered":[102],"Support":[103],"Vector":[104],"Machines":[105],"(SVMs)":[106],"then":[108],"applied":[109],"train":[111],"predictive":[113],"model":[114],"for":[115,137,141,208],"identified":[117,193,213],"motifs.":[119],"SVM":[121],"models":[122],"evaluated":[124],"five-fold":[127],"cross":[128],"validation":[129],"which":[130,176],"yields":[131],"average":[133],"accuracy":[134],"0.86":[136],"serine,":[138],"0.81":[140],"threonine.":[142],"Furthermore,":[143],"proposed":[145,226],"method":[146,227],"shown":[148,229],"perform":[150],"at":[151],"par":[152],"with":[153,199],"three":[154],"other":[155],"site":[157,182],"prediction":[158],"tools:":[159],"PPSP,":[160],"KinasePhos":[161],"2.0":[162],"GPS":[164],"2.1.":[165],"CONCLUSION:":[166],"In":[167],"this":[168],"study,":[169],"we":[170],"propose":[171],"computational":[173],"method,":[174],"ViralPhos,":[175],"aims":[177],"investigate":[179],"identify":[185,220],"sites":[188,237],"proteins.":[191],"We":[192],"informative":[194],"matched":[198],"several":[200],"well-studied":[201],"kinase":[202],"groups":[203],"as":[204,242],"catalytic":[206],"protein":[210],"substrates.":[211],"further":[217],"exploited":[218],"be":[231],"capable":[232],"predicting":[234],"has":[239],"been":[240],"implemented":[241],"web":[244],"server":[245],"http://csb.cse.yzu.edu.tw/ViralPhos/.":[246]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":6},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-08-11T07:18:39.950985","created_date":"2025-10-10T00:00:00"}
