{"id":"https://openalex.org/W2005713653","doi":"https://doi.org/10.1186/1471-2105-14-s15-s8","title":"Practical aliquoting of flowering plant genomes","display_name":"Practical aliquoting of flowering plant genomes","publication_year":2013,"publication_date":"2013-10-01","ids":{"openalex":"https://openalex.org/W2005713653","doi":"https://doi.org/10.1186/1471-2105-14-s15-s8","mag":"2005713653","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564303"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s15-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s15-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S15-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S15-S8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5106265672","display_name":"Chunfang Zheng","orcid":"https://orcid.org/0000-0003-4205-4501"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":true,"raw_author_name":"Chunfang Zheng","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Canada, K1N 6N5","Department of Mathematics and Statistics University of Ottawa Ottawa, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Canada, K1N 6N5","institution_ids":["https://openalex.org/I153718931"]},{"raw_affiliation_string":"Department of Mathematics and Statistics University of Ottawa Ottawa, Canada","institution_ids":["https://openalex.org/I153718931"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5089707881","display_name":"David Sankoff","orcid":"https://orcid.org/0000-0001-8415-5189"},"institutions":[{"id":"https://openalex.org/I153718931","display_name":"University of Ottawa","ror":"https://ror.org/03c4mmv16","country_code":"CA","type":"education","lineage":["https://openalex.org/I153718931"]}],"countries":["CA"],"is_corresponding":false,"raw_author_name":"David Sankoff","raw_affiliation_strings":["Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Canada, K1N 6N5","Department of Mathematics and Statistics University of Ottawa Ottawa, Canada"],"affiliations":[{"raw_affiliation_string":"Department of Mathematics and Statistics, University of Ottawa, 585 King Edward Avenue, Ottawa, Canada, K1N 6N5","institution_ids":["https://openalex.org/I153718931"]},{"raw_affiliation_string":"Department of Mathematics and Statistics University of Ottawa Ottawa, Canada","institution_ids":["https://openalex.org/I153718931"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5106265672"],"corresponding_institution_ids":["https://openalex.org/I153718931"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.7753,"has_fulltext":true,"cited_by_count":9,"citation_normalized_percentile":{"value":0.90078794,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"14","issue":"S15","first_page":"S8","last_page":"S8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9987999796867371,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10240","display_name":"Plant tissue culture and regeneration","score":0.9932000041007996,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12795","display_name":"Banana Cultivation and Research","score":0.9908999800682068,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.8080246448516846},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6338333487510681},{"id":"https://openalex.org/keywords/polyploid","display_name":"Polyploid","score":0.5913718342781067},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5377841591835022},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4478512704372406},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.38356781005859375}],"concepts":[{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.8080246448516846},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6338333487510681},{"id":"https://openalex.org/C2776626444","wikidata":"https://www.wikidata.org/wiki/Q213410","display_name":"Polyploid","level":4,"score":0.5913718342781067},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5377841591835022},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4478512704372406},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.38356781005859375}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011123","descriptor_name":"Polyploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018551","descriptor_name":"Solanum lycopersicum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018551","descriptor_name":"Solanum lycopersicum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018551","descriptor_name":"Solanum lycopersicum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018745","descriptor_name":"Genome, Plant","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D027843","descriptor_name":"Vitis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D027843","descriptor_name":"Vitis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D027843","descriptor_name":"Vitis","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-14-s15-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s15-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S15-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564303","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564303","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2852279","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3851865","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s15-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s15-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-14-S15-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.5799999833106995,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G2165548363","display_name":null,"funder_award_id":"Canada","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G5784215521","display_name":null,"funder_award_id":"Chair","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"},{"id":"https://openalex.org/G8284766523","display_name":null,"funder_award_id":"(NSERC)","funder_id":"https://openalex.org/F4320334593","funder_display_name":"Natural Sciences and Engineering Research Council of Canada"}],"funders":[{"id":"https://openalex.org/F4320334593","display_name":"Natural Sciences and Engineering Research Council of Canada","ror":"https://ror.org/01h531d29"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2005713653.pdf","grobid_xml":"https://content.openalex.org/works/W2005713653.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W1641544182","https://openalex.org/W1951428955","https://openalex.org/W1994145712","https://openalex.org/W2001374342","https://openalex.org/W2008047531","https://openalex.org/W2067086660","https://openalex.org/W2076658876","https://openalex.org/W2081933515","https://openalex.org/W2091507729","https://openalex.org/W2092779913","https://openalex.org/W2107915254","https://openalex.org/W2113127959","https://openalex.org/W2116905253","https://openalex.org/W2139251761","https://openalex.org/W2139856280","https://openalex.org/W2145046927","https://openalex.org/W2145757848","https://openalex.org/W2146384771","https://openalex.org/W2385435022","https://openalex.org/W2411354095","https://openalex.org/W4244331304"],"related_works":["https://openalex.org/W2356719812","https://openalex.org/W1992159363","https://openalex.org/W2369539772","https://openalex.org/W2924133609","https://openalex.org/W2042640523","https://openalex.org/W2277864219","https://openalex.org/W2995164487","https://openalex.org/W2987420353","https://openalex.org/W1491897707","https://openalex.org/W2034625591"],"abstract_inverted_index":{"We":[0,27,44,90,113],"pose":[1],"the":[2,42,56,65,76,86,92,95,100,116,143,146],"problem":[3],"of":[4,24,32,55,61,73,78,88,125,145],"dissecting":[5],"an":[6],"ancient":[7,101],"polyploid":[8],"genome":[9,20,97],"into":[10,34,80],"its":[11],"constituent":[12],"subgenomes":[13],"despite":[14],"fragmentation":[15],"and":[16,22,46,108,133],"noise":[17],"caused":[18],"by":[19,39],"rearrangements":[21],"fractionation":[23],"multi-copy":[25],"genes.":[26,89],"formulate":[28],"this":[29,135],"in":[30,75,98],"terms":[31],"decomposition":[33],"\"defective\"":[35],"k-partite":[36],"graphs,":[37],"distinguished":[38],"location":[40],"within":[41],"genome.":[43],"devise":[45],"implement":[47],"a":[48,123,126],"clustering":[49],"heuristic":[50],"for":[51],"solving":[52],"realistic":[53],"instances":[54],"problem.":[57],"An":[58],"unusual":[59],"focus":[60,66],"our":[62],"method":[63,93],"is":[64,105,109,131],"on":[67],"prioritizing":[68],"gene":[69],"density":[70],"or":[71],"lack":[72],"gaps":[74],"assembly":[77],"fragments":[79],"larger":[81],"regions,":[82],"rather":[83],"than":[84],"maximizing":[85],"number":[87],"validate":[91],"against":[94],"grape":[96],"which":[99],"core":[102],"eudicot":[103],"triplication":[104],"readily":[106],"detectible":[107],"already":[110],"well":[111],"known.":[112],"then":[114],"analyze":[115],"tomato":[117],"genome,":[118],"whose":[119],"proposed":[120],"status":[121],"as":[122],"descendant":[124],"more":[127],"recent":[128],"Solanum":[129],"hexaploid":[130],"controversial,":[132],"confirm":[134],"proposal.":[136],"The":[137],"solution":[138],"reveals":[139],"unexpected":[140],"information":[141],"about":[142],"evolution":[144],"tomato.":[147]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}