{"id":"https://openalex.org/W2097094090","doi":"https://doi.org/10.1186/1471-2105-14-s15-s15","title":"Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat","display_name":"Disentangling homeologous contigs in allo-tetraploid assembly: application to durum wheat","publication_year":2013,"publication_date":"2013-10-01","ids":{"openalex":"https://openalex.org/W2097094090","doi":"https://doi.org/10.1186/1471-2105-14-s15-s15","mag":"2097094090","pmid":"https://pubmed.ncbi.nlm.nih.gov/24564644"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-s15-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s15-s15","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S15-S15","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S15-S15","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5025043496","display_name":"Vincent Ranwez","orcid":"https://orcid.org/0000-0002-9308-7541"},"institutions":[{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Vincent Ranwez","raw_affiliation_strings":["Montpellier SupAgro, UMR AGAP, F-34060, Montpellier, France","Montpellier SupAgro UMR AGAP Montpellier France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Montpellier SupAgro, UMR AGAP, F-34060, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"Montpellier SupAgro UMR AGAP Montpellier France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210120904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5009458138","display_name":"Yan Holtz","orcid":"https://orcid.org/0000-0002-5831-5529"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Yan Holtz","raw_affiliation_strings":["INRA, UMR AGAP, F-34060, Montpellier, France","INRA, UMR AGAP Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR AGAP, F-34060, Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"INRA, UMR AGAP Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010755770","display_name":"Gautier Sarah","orcid":"https://orcid.org/0000-0001-5179-972X"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Gautier Sarah","raw_affiliation_strings":["INRA, UMR AGAP, F-34060, Montpellier, France","INRA, UMR AGAP Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR AGAP, F-34060, Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"INRA, UMR AGAP Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5085531878","display_name":"Morgane Ardisson","orcid":"https://orcid.org/0000-0002-7323-1497"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Morgane Ardisson","raw_affiliation_strings":["INRA, UMR AGAP, F-34060, Montpellier, France","INRA, UMR AGAP Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR AGAP, F-34060, Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"INRA, UMR AGAP Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101686452","display_name":"Sylvain Santoni","orcid":"https://orcid.org/0000-0002-4537-7982"},"institutions":[{"id":"https://openalex.org/I4210088668","display_name":"Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement","ror":"https://ror.org/003vg9w96","country_code":"FR","type":"government","lineage":["https://openalex.org/I4210088668"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sylvain Santoni","raw_affiliation_strings":["INRA, UMR AGAP, F-34060, Montpellier, France","INRA, UMR AGAP Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"INRA, UMR AGAP, F-34060, Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"INRA, UMR AGAP Montpellier, France","institution_ids":["https://openalex.org/I4210088668","https://openalex.org/I4210120904"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5054940859","display_name":"Sylvain Gl\u00e9min","orcid":"https://orcid.org/0000-0001-7260-4573"},"institutions":[{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"government","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I19894307","display_name":"Universit\u00e9 de Montpellier","ror":"https://ror.org/051escj72","country_code":"FR","type":"education","lineage":["https://openalex.org/I19894307"]},{"id":"https://openalex.org/I4210105943","display_name":"Institut des Sciences de l'Evolution de Montpellier","ror":"https://ror.org/01cah1n37","country_code":"FR","type":"facility","lineage":["https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I1294671590","https://openalex.org/I131077856","https://openalex.org/I1327553481","https://openalex.org/I154202486","https://openalex.org/I159885104","https://openalex.org/I19894307","https://openalex.org/I2746051580","https://openalex.org/I2799535048","https://openalex.org/I2802818602","https://openalex.org/I4210088668","https://openalex.org/I4210090127","https://openalex.org/I4210105943","https://openalex.org/I4210107625","https://openalex.org/I4210113730","https://openalex.org/I4210131494","https://openalex.org/I4210166444","https://openalex.org/I4405257220"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Sylvain Gl\u00e9min","raw_affiliation_strings":["Institut des Sciences de l'Evolution de Montpellier (ISE-M), UMR 5554 CNRS Universit\u00e9 Montpellier II,, place E. Bataillon, CC 064, 34 095, Montpellier, cedex 05, France","Institut des Sciences de l'Evolution de Montpellier (ISE-M), UMR 5554 CNRS Universit\u00e9 Montpellier II,, Montpellier, France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut des Sciences de l'Evolution de Montpellier (ISE-M), UMR 5554 CNRS Universit\u00e9 Montpellier II,, place E. Bataillon, CC 064, 34 095, Montpellier, cedex 05, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210105943"]},{"raw_affiliation_string":"Institut des Sciences de l'Evolution de Montpellier (ISE-M), UMR 5554 CNRS Universit\u00e9 Montpellier II,, Montpellier, France","institution_ids":["https://openalex.org/I1294671590","https://openalex.org/I19894307","https://openalex.org/I4210105943"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5079116572","display_name":"Muriel Tavaud-Pirra","orcid":null},"institutions":[{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Muriel Tavaud-Pirra","raw_affiliation_strings":["Montpellier SupAgro, UMR AGAP, F-34060, Montpellier, France","Montpellier SupAgro UMR AGAP Montpellier France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Montpellier SupAgro, UMR AGAP, F-34060, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"Montpellier SupAgro UMR AGAP Montpellier France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210120904"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5010393996","display_name":"Jacques David","orcid":"https://orcid.org/0000-0002-2925-2258"},"institutions":[{"id":"https://openalex.org/I24906876","display_name":"Institut Agro Montpellier","ror":"https://ror.org/03rnk6m14","country_code":"FR","type":"education","lineage":["https://openalex.org/I24906876","https://openalex.org/I4210117091","https://openalex.org/I4399657933"]},{"id":"https://openalex.org/I4210120904","display_name":"Am\u00e9lioration G\u00e9n\u00e9tique et Adaptation des Plantes m\u00e9diterran\u00e9ennes et tropicales","ror":"https://ror.org/02w4exq36","country_code":"FR","type":"facility","lineage":["https://openalex.org/I131077856","https://openalex.org/I19894307","https://openalex.org/I24906876","https://openalex.org/I4210088668","https://openalex.org/I4210117091","https://openalex.org/I4210120904","https://openalex.org/I4399657933"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Jacques David","raw_affiliation_strings":["Montpellier SupAgro, UMR AGAP, F-34060, Montpellier, France","Montpellier SupAgro UMR AGAP Montpellier France"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Montpellier SupAgro, UMR AGAP, F-34060, Montpellier, France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210120904"]},{"raw_affiliation_string":"Montpellier SupAgro UMR AGAP Montpellier France","institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210120904"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5025043496"],"corresponding_institution_ids":["https://openalex.org/I24906876","https://openalex.org/I4210120904"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":3.441,"has_fulltext":true,"cited_by_count":23,"citation_normalized_percentile":{"value":0.92020335,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":97},"biblio":{"volume":"14","issue":"S15","first_page":"S15","last_page":"S15"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.7633000016212463,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.7633000016212463,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10733","display_name":"Wheat and Barley Genetics and Pathology","score":0.0949999988079071,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.05460000038146973,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/contig","display_name":"Contig","score":0.9116173982620239},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.736641526222229},{"id":"https://openalex.org/keywords/ploidy","display_name":"Ploidy","score":0.703122615814209},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.6211899518966675},{"id":"https://openalex.org/keywords/polyploid","display_name":"Polyploid","score":0.5601022839546204},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.49685195088386536},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.3237220048904419},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.2336525321006775}],"concepts":[{"id":"https://openalex.org/C59582021","wikidata":"https://www.wikidata.org/wiki/Q1128751","display_name":"Contig","level":4,"score":0.9116173982620239},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.736641526222229},{"id":"https://openalex.org/C143191323","wikidata":"https://www.wikidata.org/wiki/Q118406","display_name":"Ploidy","level":3,"score":0.703122615814209},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.6211899518966675},{"id":"https://openalex.org/C2776626444","wikidata":"https://www.wikidata.org/wiki/Q213410","display_name":"Polyploid","level":4,"score":0.5601022839546204},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.49685195088386536},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.3237220048904419},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.2336525321006775}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004171","descriptor_name":"Diploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014908","descriptor_name":"Triticum","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057891","descriptor_name":"Tetraploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057891","descriptor_name":"Tetraploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057891","descriptor_name":"Tetraploidy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-s15-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s15-s15","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S15-S15","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24564644","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24564644","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:agritrop.cirad.fr:571257","is_oa":false,"landing_page_url":"http://agritrop.cirad.fr/571257/1/document_571257.pdf","pdf_url":"http://agritrop.cirad.fr/571257/1/document_571257.pdf","source":{"id":"https://openalex.org/S4306402311","display_name":"Agritrop (Cirad)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I131077856","host_organization_name":"Centre de Coop\u00e9ration Internationale en Recherche Agronomique pour le D\u00e9veloppement","host_organization_lineage":["https://openalex.org/I131077856"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article de revue"},{"id":"pmh:oai:europepmc.org:2852272","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3851826","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:HAL:hal-01137179v1","is_oa":false,"landing_page_url":"https://hal.science/hal-01137179","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Eleventh Annual Research in Computational Molecular Biology (RECOMB) Satellite Workshop on Comparative Genomics, Oct 2013, Lyon, France. &#x27E8;10.1186/1471-2105-14-S15-S15&#x27E9;","raw_type":"info:eu-repo/semantics/conferenceObject"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-s15-s15","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-s15-s15","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-S15-S15","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"display_name":"Life in Land","id":"https://metadata.un.org/sdg/15"}],"awards":[{"id":"https://openalex.org/G4455444033","display_name":null,"funder_award_id":"ANR-10-BINF-01-02","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7240651115","display_name":null,"funder_award_id":"ANR-10","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320309924","display_name":"Agropolis Fondation","ror":"https://ror.org/05kpkpg04"},{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"},{"id":"https://openalex.org/F4320322892","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73"},{"id":"https://openalex.org/F4320323910","display_name":"Institut National de la Recherche Agronomique","ror":"https://ror.org/01x3gbx83"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2097094090.pdf","grobid_xml":"https://content.openalex.org/works/W2097094090.grobid-xml"},"referenced_works_count":42,"referenced_works":["https://openalex.org/W1845028561","https://openalex.org/W1891283710","https://openalex.org/W1964901903","https://openalex.org/W1965440489","https://openalex.org/W1966822396","https://openalex.org/W1966910443","https://openalex.org/W1967795232","https://openalex.org/W1979893941","https://openalex.org/W1982908200","https://openalex.org/W2003910843","https://openalex.org/W2009441527","https://openalex.org/W2010361633","https://openalex.org/W2020265469","https://openalex.org/W2032906301","https://openalex.org/W2036897871","https://openalex.org/W2037939532","https://openalex.org/W2045942443","https://openalex.org/W2049347753","https://openalex.org/W2060842569","https://openalex.org/W2078677930","https://openalex.org/W2083878136","https://openalex.org/W2086338036","https://openalex.org/W2086573220","https://openalex.org/W2087576544","https://openalex.org/W2094971410","https://openalex.org/W2096176621","https://openalex.org/W2103441770","https://openalex.org/W2103493690","https://openalex.org/W2108234281","https://openalex.org/W2109347434","https://openalex.org/W2114475493","https://openalex.org/W2118889089","https://openalex.org/W2121668668","https://openalex.org/W2126372380","https://openalex.org/W2140682272","https://openalex.org/W2161395319","https://openalex.org/W2162920135","https://openalex.org/W2164971951","https://openalex.org/W2166265186","https://openalex.org/W2167962184","https://openalex.org/W2169341792","https://openalex.org/W2592570088"],"related_works":["https://openalex.org/W2379004733","https://openalex.org/W2104566180","https://openalex.org/W2322157237","https://openalex.org/W2018908403","https://openalex.org/W2077727980","https://openalex.org/W1999275754","https://openalex.org/W61422302","https://openalex.org/W4205453876","https://openalex.org/W2171460859","https://openalex.org/W2057124609"],"abstract_inverted_index":{"Using":[0],"Next":[1],"Generation":[2],"Sequencing,":[3],"SNP":[4,257],"discovery":[5],"is":[6,150,230],"relatively":[7],"easy":[8],"on":[9,80,161,210,224],"diploid":[10,66,128,190],"species":[11,17,71],"and":[12,29,107,135,153,179,192],"still":[13],"hampered":[14],"in":[15,53,112,119,250],"polyploid":[16],"by":[18,37],"the":[19,45,49,54,59,65,69,73,88,100,127,147,189,194,208,211,243],"confusion":[20],"due":[21],"to":[22,32,64,145,156,184,188,216,242],"homeology.":[23],"We":[24,56],"develop":[25],"HomeoSplitter;":[26],"a":[27,120,151,162,167,239],"fast":[28,152],"effective":[30,154],"solution":[31,155,241],"split":[33],"original":[34,74,78],"contigs":[35],"obtained":[36],"RNAseq":[38],"into":[39],"two":[40,50],"homeologous":[41,51,158,248],"sequences.":[42],"It":[43],"uses":[44],"differential":[46],"expression":[47],"of":[48,68,90,99,126,170,176,196,202,219,246],"genes":[52],"RNA.":[55],"verify":[57,86],"that":[58,87],"new":[60,82],"sequences":[61,159,175,186],"are":[62],"closer":[63,187],"progenitors":[67],"allopolyploid":[70],"than":[72],"contig.":[75],"By":[76],"remapping":[77],"reads":[79,209],"these":[81],"sequences,":[83],"we":[84],"also":[85],"number":[89,195],"valuable":[91,197],"detected":[92,205],"SNPs":[93,198,204,221],"has":[94],"significantly":[95],"increased.":[96],"Thirty":[97],"accessions":[98],"tetraploid":[101],"durum":[102,123,214],"wheat":[103],"(Triticum":[104],"turgidum,":[105],"A":[106,139],"B":[108,133],"genomes)":[109],"were":[110,117,141],"sequenced":[111],"pooled":[113],"cDNA":[114],"libraries.":[115],"Reads":[116],"assembled":[118],"de":[121,212],"novo":[122,213],"assembly.":[124],"Transcriptomes":[125],"species,":[129],"Aegilops":[130],"speltoides":[131,178],"(close":[132],"genome)":[134,140],"Triticum":[136],"urartu":[137],"(":[138],"used":[142],"as":[143],"reference":[144],"benchmark":[146,168],"method.":[148],"HomeoSplitter":[149,181,225,228],"disentangle":[157],"based":[160],"maximum":[163],"likelihood":[164],"optimization.":[165],"On":[166],"set":[169],"2,505":[171],"clusters":[172],"containing":[173],"homologous":[174],"urartu,":[177],"durum,":[180],"was":[182],"efficient":[183],"build":[185],"references":[191],"increased":[193],"from":[199],"188":[200],"out":[201,218],"1,360":[203],"when":[206,222],"mapping":[207,223],"assembly":[215],"762":[217],"1,620":[220],"contigs.":[226],"The":[227],"program":[229],"freely":[231],"available":[232],"at":[233],"http://bioweb.supagro.inra.fr/homeoSplitter/":[234],".":[235],"This":[236],"work":[237],"provides":[238],"practical":[240],"complex":[244],"problem":[245],"disentangling":[247],"transcripts":[249],"allo-tetraploids,":[251],"which":[252],"further":[253],"allows":[254],"an":[255],"improved":[256],"detection.":[258]},"counts_by_year":[{"year":2023,"cited_by_count":2},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":2}],"updated_date":"2026-08-12T07:12:00.856984","created_date":"2025-10-10T00:00:00"}
