{"id":"https://openalex.org/W641661564","doi":"https://doi.org/10.1186/1471-2105-14-s1-s2","title":"SymGRASS: a database of sugarcane orthologous genes involved in arbuscular mycorrhiza and root nodule symbiosis : from Seventh International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, (CIBB 2010), Palermo, Italy, 16 - 18 September 2010","display_name":"SymGRASS: a database of sugarcane orthologous genes involved in arbuscular mycorrhiza and root nodule symbiosis : from Seventh International Meeting on Computational Intelligence Methods for Bioinformatics and Biostatistics, (CIBB 2010), Palermo, Italy, 16 - 18 September 2010","publication_year":2013,"publication_date":"2013-01-14","ids":{"openalex":"https://openalex.org/W641661564","doi":"https://doi.org/10.1186/1471-2105-14-s1-s2","mag":"641661564"},"language":"en","primary_location":{"id":"pmh:oai:publikationen.ub.uni-frankfurt.de:28311","is_oa":true,"landing_page_url":"http://publikationen.ub.uni-frankfurt.de/frontdoor/index/index/docId/28311","pdf_url":"http://publikationen.ub.uni-frankfurt.de/files/28311/1471-2105-14-S1-S2.pdf","source":{"id":"https://openalex.org/S4306400432","display_name":"Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114090438","host_organization_name":"Goethe University Frankfurt","host_organization_lineage":["https://openalex.org/I114090438"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"conferenceobject"},"type":"article","indexed_in":[],"open_access":{"is_oa":true,"oa_status":"green","oa_url":"http://publikationen.ub.uni-frankfurt.de/files/28311/1471-2105-14-S1-S2.pdf","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5002766311","display_name":"Luis C. Belarmino","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Luis C. Belarmino","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5047391604","display_name":"Roberta Lane de Oliveira Silva","orcid":"https://orcid.org/0000-0003-1876-0094"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Roberta Lane de Oliveira Silva","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0003-1876-0094","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035165414","display_name":"Nina da Mota Soares Cavalcanti","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nina da Mota Soares Cavalcanti","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5024102975","display_name":"Nicolas Krezdorn","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Nicolas Krezdorn","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016019547","display_name":"\u00c9derson Akio Kido","orcid":"https://orcid.org/0000-0001-5484-993X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"\u00c9derson Akio Kido","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064084466","display_name":"Ralf Horres","orcid":"https://orcid.org/0000-0001-9246-909X"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ralf Horres","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066983733","display_name":"Peter Winter","orcid":"https://orcid.org/0000-0002-6557-3219"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Peter Winter","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-6557-3219","affiliations":[]},{"author_position":"middle","author":{"id":"https://openalex.org/A5109134449","display_name":"G\u00fcnter Kahl","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"G\u00fcnter Kahl","raw_affiliation_strings":[],"raw_orcid":null,"affiliations":[]},{"author_position":"last","author":{"id":"https://openalex.org/A5050407496","display_name":"Ana Maria Benko\u2010Iseppon","orcid":"https://orcid.org/0000-0002-0575-3197"},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Ana Maria Benko\u2010Iseppon","raw_affiliation_strings":[],"raw_orcid":"https://orcid.org/0000-0002-0575-3197","affiliations":[]}],"institutions":[],"countries_distinct_count":0,"institutions_distinct_count":0,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":null,"apc_paid":null,"fwci":0.0,"has_fulltext":true,"cited_by_count":0,"citation_normalized_percentile":{"value":0.02917807,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":null,"biblio":{"volume":null,"issue":null,"first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12431","display_name":"Sugarcane Cultivation and Processing","score":0.9309999942779541,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12431","display_name":"Sugarcane Cultivation and Processing","score":0.9309999942779541,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/unigene","display_name":"UniGene","score":0.7426036596298218},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.6739033460617065},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.6507241725921631},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.5667415261268616},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.5514866709709167},{"id":"https://openalex.org/keywords/expressed-sequence-tag","display_name":"Expressed sequence tag","score":0.5228400826454163},{"id":"https://openalex.org/keywords/refseq","display_name":"RefSeq","score":0.4658176898956299},{"id":"https://openalex.org/keywords/orthologous-gene","display_name":"Orthologous Gene","score":0.4271073341369629},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4142674207687378},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3572661876678467},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.23415091633796692},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.22537332773208618}],"concepts":[{"id":"https://openalex.org/C2780330800","wikidata":"https://www.wikidata.org/wiki/Q7884647","display_name":"UniGene","level":5,"score":0.7426036596298218},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.6739033460617065},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.6507241725921631},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.5667415261268616},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.5514866709709167},{"id":"https://openalex.org/C149034497","wikidata":"https://www.wikidata.org/wiki/Q1384835","display_name":"Expressed sequence tag","level":4,"score":0.5228400826454163},{"id":"https://openalex.org/C151810110","wikidata":"https://www.wikidata.org/wiki/Q7307074","display_name":"RefSeq","level":4,"score":0.4658176898956299},{"id":"https://openalex.org/C2909108991","wikidata":"https://www.wikidata.org/wiki/Q414601","display_name":"Orthologous Gene","level":4,"score":0.4271073341369629},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4142674207687378},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3572661876678467},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.23415091633796692},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.22537332773208618}],"mesh":[],"locations_count":1,"locations":[{"id":"pmh:oai:publikationen.ub.uni-frankfurt.de:28311","is_oa":true,"landing_page_url":"http://publikationen.ub.uni-frankfurt.de/frontdoor/index/index/docId/28311","pdf_url":"http://publikationen.ub.uni-frankfurt.de/files/28311/1471-2105-14-S1-S2.pdf","source":{"id":"https://openalex.org/S4306400432","display_name":"Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114090438","host_organization_name":"Goethe University Frankfurt","host_organization_lineage":["https://openalex.org/I114090438"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"conferenceobject"}],"best_oa_location":{"id":"pmh:oai:publikationen.ub.uni-frankfurt.de:28311","is_oa":true,"landing_page_url":"http://publikationen.ub.uni-frankfurt.de/frontdoor/index/index/docId/28311","pdf_url":"http://publikationen.ub.uni-frankfurt.de/files/28311/1471-2105-14-S1-S2.pdf","source":{"id":"https://openalex.org/S4306400432","display_name":"Publication Server of Goethe University Frankfurt am Main (Goethe University Frankfurt)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I114090438","host_organization_name":"Goethe University Frankfurt","host_organization_lineage":["https://openalex.org/I114090438"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"conferenceobject"},"sustainable_development_goals":[{"display_name":"Responsible consumption and production","id":"https://metadata.un.org/sdg/12","score":0.4399999976158142}],"awards":[],"funders":[],"has_content":{"grobid_xml":false,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W641661564.pdf"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2167243499","https://openalex.org/W2552237863","https://openalex.org/W2085869131","https://openalex.org/W2600489726","https://openalex.org/W2171442972","https://openalex.org/W2469726068","https://openalex.org/W2085512078","https://openalex.org/W1972265848","https://openalex.org/W2047144846","https://openalex.org/W1492487712","https://openalex.org/W2935957736","https://openalex.org/W2160420838","https://openalex.org/W2128366251","https://openalex.org/W2486975107","https://openalex.org/W2008232358","https://openalex.org/W2531444860","https://openalex.org/W2246073932","https://openalex.org/W2127968944","https://openalex.org/W2156032987","https://openalex.org/W2141290377"],"abstract_inverted_index":{"Background:":[0],"The":[1,96,215,271],"rationale":[2],"for":[3,19,40,112,119,128,236,254,302,319,341],"gathering":[4],"information":[5,37],"from":[6,78],"plants":[7],"procuring":[8],"nitrogen":[9,32],"through":[10,245],"symbiotic":[11,192],"interactions":[12],"controlled":[13],"by":[14,285],"a":[15,20,104,199,246,262,339],"common":[16,50],"genetic":[17],"program":[18],"sustainable":[21],"biofuel":[22,42],"production":[23],"is":[24,98],"the":[25,41,49,79,138,149,158,167,184,188,197,258,289,299,303,308,320,327,330,342],"high":[26],"energy":[27],"demanding":[28],"application":[29],"of":[30,48,179,201,233,264,293,310,322,332,344],"synthetic":[31],"fertilizers.":[33],"We":[34,195,296],"curated":[35],"sequence":[36,160],"publicly":[38],"available":[39],"plant":[43,107],"sugarcane,":[44,335],"performed":[45],"an":[46,68],"analysis":[47],"SYM":[51,150,240,304],"pathway":[52,151,305],"known":[53,147],"to":[54,116,126,156,173,187,325],"control":[55],"symbiosis":[56,265],"in":[57,148,166,183,206,243,257,274,334],"other":[58],"plants,":[59],"and":[60,64,74,83,94,123,175,210,225,228,231,239,260,282,291],"provide":[61],"results,":[62],"sequences":[63,73,146,301,316],"literature":[65],"links":[66],"as":[67,142,154,171,338],"online":[69],"database.":[70,161],"Methods:":[71],"Sugarcane":[72],"informations":[75],"were":[76,152,252],"downloaded":[77],"nucEST":[80],"database,":[81],"cleaned":[82],"trimmed":[84],"with":[85,88,110,307],"seqclean,":[86],"assembled":[87],"TGICL":[89],"plus":[90],"translating":[91],"mapping":[92],"method,":[93],"annotated.":[95],"annotation":[97,230],"based":[99],"on":[100,279],"BLAST":[101,124],"searches":[102],"against":[103],"local":[105],"formatted":[106],"Uniprot90":[108],"generated":[109],"CD-HIT":[111],"functional":[113],"assignment,":[114],"rpsBLAST":[115],"CDD":[117],"database":[118,169,200,216],"conserved":[120],"domain":[121],"analysis,":[122],"search":[125,157],"sorghum's":[127],"Gene":[129,133],"Ontology":[130],"(GO)":[131],"assignment.":[132],"expression":[134,177,235],"was":[135,268],"normalized":[136],"according":[137],"Unigene":[139],"standard,":[140],"presented":[141],"ESTs/100":[143],"kb.":[144],"Protein":[145],"used":[153],"queries":[155,172],"SymGRASS":[159,275],"Additionally,":[162],"antimicrobial":[163],"peptides":[164],"described":[165],"PhytAMP":[168],"served":[170],"retrieve":[174],"generate":[176],"profiles":[178],"these":[180],"defense":[181],"genes":[182,204,242,251,267],"libraries":[185,189],"compared":[186],"obtained":[190],"under":[191],"interactions.":[193],"Results:":[194],"describe":[196],"SymGRASS,":[198],"sugarcane":[202,237,244,287],"orthologous":[203,241],"involved":[205],"arbuscular":[207],"mycorrhiza":[208],"(AM)":[209],"root":[211],"nodule":[212],"(RN)":[213],"symbiosis.":[214],"aggregates":[217],"knowledge":[218,272],"about":[219],"sequences,":[220],"tissues,":[221],"organ,":[222],"developmental":[223],"stages":[224],"experimental":[226],"conditions,":[227],"provides":[229],"level":[232],"gene":[234],"transcripts":[238],"web":[247],"interface.":[248],"Several":[249],"candidate":[250,300],"found":[253],"all":[255],"nodes":[256],"pathway,":[259],"interestingly":[261],"set":[263],"specific":[266],"found.":[269],"Conclusions:":[270],"integrated":[273],"may":[276],"guide":[277],"studies":[278,324],"molecular,":[280],"cellular":[281],"physiological":[283],"mechanisms":[284,328],"which":[286],"controls":[288],"establishment":[290,331],"efficiency":[292],"endophytic":[294],"associations.":[295],"believe":[297],"that":[298],"together":[306],"pool":[309],"exclusively":[311],"expressed":[312],"tentative":[313],"consensus":[314],"(TC)":[315],"are":[317],"crucial":[318],"design":[321],"molecular":[323],"unravel":[326],"controlling":[329],"symbioses":[333],"ultimately":[336],"serving":[337],"basis":[340],"improvement":[343],"grass":[345],"crops.":[346]},"counts_by_year":[],"updated_date":"2026-08-01T09:00:35.917206","created_date":"2025-10-10T00:00:00"}
