{"id":"https://openalex.org/W2096503372","doi":"https://doi.org/10.1186/1471-2105-14-8","title":"XperimentR: painless annotation of a biological experiment for the laboratory scientist","display_name":"XperimentR: painless annotation of a biological experiment for the laboratory scientist","publication_year":2013,"publication_date":"2013-01-16","ids":{"openalex":"https://openalex.org/W2096503372","doi":"https://doi.org/10.1186/1471-2105-14-8","mag":"2096503372","pmid":"https://pubmed.ncbi.nlm.nih.gov/23323856"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5067888810","display_name":"Christopher Tomlinson","orcid":"https://orcid.org/0000-0002-8634-6111"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Chris D Tomlinson","raw_affiliation_strings":["Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London SW7 2AZ, UK. chris.tomlinson@imperial.ac.uk","Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London SW7 2AZ, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London SW7 2AZ, UK. chris.tomlinson@imperial.ac.uk","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London SW7 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045408554","display_name":"Geraint Barton","orcid":null},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Geraint R Barton","raw_affiliation_strings":["Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London, SW7 2AZ, UK","Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London, SW7 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049341457","display_name":"Mark Woodbridge","orcid":"https://orcid.org/0000-0002-0650-9751"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark Woodbridge","raw_affiliation_strings":["Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London, SW7 2AZ, UK","Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London, SW7 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, London, UK","institution_ids":["https://openalex.org/I47508984"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5001416834","display_name":"Sarah Butcher","orcid":"https://orcid.org/0000-0002-4494-5124"},"institutions":[{"id":"https://openalex.org/I47508984","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10","country_code":"GB","type":"education","lineage":["https://openalex.org/I47508984"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Sarah A Butcher","raw_affiliation_strings":["Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London, SW7 2AZ, UK","Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, London, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, South Kensington Campus, London, SW7 2AZ, UK","institution_ids":["https://openalex.org/I47508984"]},{"raw_affiliation_string":"Centre for Integrated Systems Biology and Bioinformatics, Imperial College London, Sir Ernst Chain Building, London, UK","institution_ids":["https://openalex.org/I47508984"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5067888810"],"corresponding_institution_ids":["https://openalex.org/I47508984"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.4961,"has_fulltext":true,"cited_by_count":15,"citation_normalized_percentile":{"value":0.82240717,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"1","first_page":"8","last_page":"8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9498000144958496,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9498000144958496,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11986","display_name":"Scientific Computing and Data Management","score":0.010499999858438969,"subfield":{"id":"https://openalex.org/subfields/1802","display_name":"Information Systems and Management"},"field":{"id":"https://openalex.org/fields/18","display_name":"Decision Sciences"},"domain":{"id":"https://openalex.org/domains/2","display_name":"Social Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.00930000003427267,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7872343063354492},{"id":"https://openalex.org/keywords/metadata","display_name":"Metadata","score":0.6477322578430176},{"id":"https://openalex.org/keywords/interface","display_name":"Interface (matter)","score":0.6176105737686157},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5901044011116028},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.5361160635948181},{"id":"https://openalex.org/keywords/raw-data","display_name":"Raw data","score":0.5156151652336121},{"id":"https://openalex.org/keywords/data-sharing","display_name":"Data sharing","score":0.4945521056652069},{"id":"https://openalex.org/keywords/annotation","display_name":"Annotation","score":0.4800373315811157},{"id":"https://openalex.org/keywords/user-interface","display_name":"User interface","score":0.42465221881866455},{"id":"https://openalex.org/keywords/data-science","display_name":"Data science","score":0.37233826518058777},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.32191717624664307}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7872343063354492},{"id":"https://openalex.org/C93518851","wikidata":"https://www.wikidata.org/wiki/Q180160","display_name":"Metadata","level":2,"score":0.6477322578430176},{"id":"https://openalex.org/C113843644","wikidata":"https://www.wikidata.org/wiki/Q901882","display_name":"Interface (matter)","level":4,"score":0.6176105737686157},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5901044011116028},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.5361160635948181},{"id":"https://openalex.org/C132964779","wikidata":"https://www.wikidata.org/wiki/Q2110223","display_name":"Raw data","level":2,"score":0.5156151652336121},{"id":"https://openalex.org/C2779965156","wikidata":"https://www.wikidata.org/wiki/Q5227350","display_name":"Data sharing","level":3,"score":0.4945521056652069},{"id":"https://openalex.org/C2776321320","wikidata":"https://www.wikidata.org/wiki/Q857525","display_name":"Annotation","level":2,"score":0.4800373315811157},{"id":"https://openalex.org/C89505385","wikidata":"https://www.wikidata.org/wiki/Q47146","display_name":"User interface","level":2,"score":0.42465221881866455},{"id":"https://openalex.org/C2522767166","wikidata":"https://www.wikidata.org/wiki/Q2374463","display_name":"Data science","level":1,"score":0.37233826518058777},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.32191717624664307},{"id":"https://openalex.org/C173608175","wikidata":"https://www.wikidata.org/wiki/Q232661","display_name":"Parallel computing","level":1,"score":0.0},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0},{"id":"https://openalex.org/C204787440","wikidata":"https://www.wikidata.org/wiki/Q188504","display_name":"Alternative medicine","level":2,"score":0.0},{"id":"https://openalex.org/C129307140","wikidata":"https://www.wikidata.org/wiki/Q6795880","display_name":"Maximum bubble pressure method","level":3,"score":0.0},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.0},{"id":"https://openalex.org/C142724271","wikidata":"https://www.wikidata.org/wiki/Q7208","display_name":"Pathology","level":1,"score":0.0},{"id":"https://openalex.org/C157915830","wikidata":"https://www.wikidata.org/wiki/Q2928001","display_name":"Bubble","level":2,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007256","descriptor_name":"Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012106","descriptor_name":"Research","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012107","descriptor_name":"Research Design","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012108","descriptor_name":"Research Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014584","descriptor_name":"User-Computer Interface","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059232","descriptor_name":"Laboratory Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059232","descriptor_name":"Laboratory Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059232","descriptor_name":"Laboratory Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059232","descriptor_name":"Laboratory Personnel","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":6,"locations":[{"id":"doi:10.1186/1471-2105-14-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23323856","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23323856","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:c332de064dc74a468527e9a78dbe39da","is_oa":true,"landing_page_url":"https://doaj.org/article/c332de064dc74a468527e9a78dbe39da","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 14, Iss 1, p 8 (2013)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2571666","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3571946","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3571946","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3571946","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:spiral.imperial.ac.uk:10044/1/10526","is_oa":true,"landing_page_url":"http://hdl.handle.net/10044/1/10526","pdf_url":null,"source":{"id":"https://openalex.org/S4306401396","display_name":"Spiral (Imperial College London)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I47508984","host_organization_name":"Imperial College London","host_organization_lineage":["https://openalex.org/I47508984"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Journal Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5403572220","display_name":null,"funder_award_id":"BB/G003912/1","funder_id":"https://openalex.org/F4320334629","funder_display_name":"Biotechnology and Biological Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320320283","display_name":"Imperial College London","ror":"https://ror.org/041kmwe10"},{"id":"https://openalex.org/F4320332167","display_name":"Directorate for Biological Sciences","ror":"https://ror.org/001xhss06"},{"id":"https://openalex.org/F4320334629","display_name":"Biotechnology and Biological Sciences Research Council","ror":"https://ror.org/00cwqg982"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2096503372.pdf","grobid_xml":"https://content.openalex.org/works/W2096503372.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W1486283310","https://openalex.org/W1544923801","https://openalex.org/W1581773175","https://openalex.org/W1737273088","https://openalex.org/W1871852719","https://openalex.org/W2084975981","https://openalex.org/W2124811352","https://openalex.org/W2126777664","https://openalex.org/W2129301079","https://openalex.org/W2130542009","https://openalex.org/W2131660156","https://openalex.org/W2142970879","https://openalex.org/W2143129697","https://openalex.org/W2155829013","https://openalex.org/W2160042082","https://openalex.org/W2166934660","https://openalex.org/W2598599718","https://openalex.org/W2609523189"],"related_works":["https://openalex.org/W2392768766","https://openalex.org/W2058118494","https://openalex.org/W2361861616","https://openalex.org/W2095118173","https://openalex.org/W2371669717","https://openalex.org/W2372282971","https://openalex.org/W1968399615","https://openalex.org/W2047864778","https://openalex.org/W2107103369","https://openalex.org/W2566090830"],"abstract_inverted_index":{"BACKGROUND:":[0],"Today's":[1],"biological":[2,129,158],"experiments":[3,181],"often":[4],"involve":[5],"the":[6,22,25,38,41,46,49,87,128,144,157,161,186,231],"collaboration":[7],"of":[8,24,40,48,60,105,137],"multidisciplinary":[9],"researchers":[10],"utilising":[11],"several":[12],"high":[13],"throughput":[14],"'omics":[15],"platforms.":[16],"There":[17,73],"is":[18,74,196,215],"a":[19,57,75,106,207,224],"requirement":[20],"for":[21,68,77,99,117,190,218],"details":[23,126,239],"experiment":[26],"to":[27,34,44,51,70,81,229,234],"be":[28,140,152,175,183,201],"adequately":[29],"described":[30],"using":[31,143,206],"standardised":[32],"ontologies":[33],"enable":[35],"data":[36,42,50,150,171],"preservation,":[37],"analysis":[39],"and":[43,64,109,119,133,148,154,180,199,237],"facilitate":[45],"export":[47],"public":[52,193],"repositories.":[53,172],"However":[54],"there":[55],"are":[56],"bewildering":[58],"number":[59],"ontologies,":[61],"controlled":[62],"vocabularies,":[63],"minimum":[65],"standards":[66],"available":[67,198,217],"use":[69,100],"describe":[71,236],"experiments.":[72,242],"need":[76],"user-friendly":[78],"software":[79,227],"tools":[80],"aid":[82,230],"laboratory":[83,102,232],"scientists":[84],"in":[85,185,192],"capturing":[86,118],"experimental":[88,121,134],"information.":[89],"RESULTS:":[90],"A":[91,212],"web":[92,225],"application":[93,228],"called":[94],"XperimentR":[95,195],"has":[96],"been":[97],"developed":[98],"by":[101,205],"scientists,":[103],"consisting":[104],"browser-based":[107],"interface":[108],"server-side":[110],"components":[111],"which":[112,138],"provide":[113],"an":[114],"intuitive":[115],"platform":[116],"sharing":[120],"metadata.":[122],"Information":[123],"recorded":[124],"includes":[125],"about":[127,240],"samples,":[130],"procedures,":[131],"protocols,":[132],"technologies,":[135],"all":[136],"can":[139,151,174,182,200],"easily":[141],"annotated":[142],"appropriate":[145],"ontologies.":[146],"Files":[147],"raw":[149],"imported":[153],"associated":[155],"with":[156,177],"samples":[159],"via":[160],"interface,":[162],"from":[163],"either":[164],"users'":[165],"computers,":[166],"or":[167,204],"commonly":[168],"used":[169],"open-source":[170],"Experiments":[173],"shared":[176],"other":[178],"users,":[179],"exported":[184],"standard":[187],"ISA-Tab":[188],"format":[189],"deposition":[191],"databases.":[194],"freely":[197],"installed":[202],"natively":[203],"provided":[208],"pre-configured":[209],"Virtual":[210],"Machine.":[211],"guest":[213],"system":[214],"also":[216],"trial":[219],"purposes.":[220],"CONCLUSION:":[221],"We":[222],"present":[223],"based":[226],"scientist":[233],"capture,":[235],"share":[238],"their":[241]},"counts_by_year":[{"year":2020,"cited_by_count":2},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-06-19T17:40:00.097472","created_date":"2025-10-10T00:00:00"}
