{"id":"https://openalex.org/W2026775160","doi":"https://doi.org/10.1186/1471-2105-14-348","title":"Selecting informative subsets of sparse supermatrices increases the chance to find correct trees","display_name":"Selecting informative subsets of sparse supermatrices increases the chance to find correct trees","publication_year":2013,"publication_date":"2013-12-01","ids":{"openalex":"https://openalex.org/W2026775160","doi":"https://doi.org/10.1186/1471-2105-14-348","mag":"2026775160","pmid":"https://pubmed.ncbi.nlm.nih.gov/24299043"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-348","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-348","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-348","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-348","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5068566097","display_name":"Bernhard Misof","orcid":"https://orcid.org/0000-0003-4175-6798"},"institutions":[{"id":"https://openalex.org/I4210099549","display_name":"Zoological Research Museum Alexander Koenig","ror":"https://ror.org/00wz4b049","country_code":"DE","type":"archive","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210099549"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Bernhard Misof","raw_affiliation_strings":[", Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113 Bonn, Germany. b.misof.zfmk@uni-bonn.de","Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":", Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113 Bonn, Germany. b.misof.zfmk@uni-bonn.de","institution_ids":["https://openalex.org/I4210099549"]},{"raw_affiliation_string":"Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210099549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5049530407","display_name":"Benjamin Meyer","orcid":"https://orcid.org/0000-0002-0176-4171"},"institutions":[{"id":"https://openalex.org/I4210108711","display_name":"University Medical Center Hamburg-Eppendorf","ror":"https://ror.org/01zgy1s35","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711"]},{"id":"https://openalex.org/I4210111521","display_name":"Martini-Klinik","ror":"https://ror.org/01vb5ks25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I159176309","https://openalex.org/I4210108711","https://openalex.org/I4210111521"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Benjamin Meyer","raw_affiliation_strings":["Institut f\u00fcr Systematische Neurowissenschaften, Universit\u00e4tsklinikum Hamburg Eppendorf, Martinistr. 52, 20246, Hamburg, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institut f\u00fcr Systematische Neurowissenschaften, Universit\u00e4tsklinikum Hamburg Eppendorf, Martinistr. 52, 20246, Hamburg, Germany","institution_ids":["https://openalex.org/I4210108711","https://openalex.org/I4210111521"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003390035","display_name":"Bj\u00f6rn M. von Reumont","orcid":"https://orcid.org/0000-0002-7462-8226"},"institutions":[{"id":"https://openalex.org/I1336856363","display_name":"Natural History Museum","ror":"https://ror.org/039zvsn29","country_code":"GB","type":"archive","lineage":["https://openalex.org/I1336856363"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Bj\u00f6rn Marcus von Reumont","raw_affiliation_strings":["Natural History Museum, London Department of Life Sciences, Cromwell Road, London, SW7 5BD, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Natural History Museum, London Department of Life Sciences, Cromwell Road, London, SW7 5BD, UK","institution_ids":["https://openalex.org/I1336856363"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050036449","display_name":"Patrick K\u00fcck","orcid":"https://orcid.org/0000-0002-5729-1932"},"institutions":[{"id":"https://openalex.org/I4210099549","display_name":"Zoological Research Museum Alexander Koenig","ror":"https://ror.org/00wz4b049","country_code":"DE","type":"archive","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210099549"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Patrick K\u00fcck","raw_affiliation_strings":["Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210099549"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5007324726","display_name":"Katharina Misof","orcid":null},"institutions":[{"id":"https://openalex.org/I4210099549","display_name":"Zoological Research Museum Alexander Koenig","ror":"https://ror.org/00wz4b049","country_code":"DE","type":"archive","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210099549"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Katharina Misof","raw_affiliation_strings":["Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210099549"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5045282387","display_name":"Karen Meusemann","orcid":"https://orcid.org/0000-0002-7590-4851"},"institutions":[{"id":"https://openalex.org/I1292875679","display_name":"Commonwealth Scientific and Industrial Research Organisation","ror":"https://ror.org/03qn8fb07","country_code":"AU","type":"government","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210089744","display_name":"Australian National Insect Collection","ror":"https://ror.org/00c8nx045","country_code":"AU","type":"archive","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210089744","https://openalex.org/I4387156119"]},{"id":"https://openalex.org/I4210099549","display_name":"Zoological Research Museum Alexander Koenig","ror":"https://ror.org/00wz4b049","country_code":"DE","type":"archive","lineage":["https://openalex.org/I315704651","https://openalex.org/I4210099549"]},{"id":"https://openalex.org/I4210166020","display_name":"Ecosystem Sciences","ror":"https://ror.org/05mbqa235","country_code":"AU","type":"facility","lineage":["https://openalex.org/I1292875679","https://openalex.org/I2801453606","https://openalex.org/I4210166020","https://openalex.org/I4387156119"]}],"countries":["AU","DE"],"is_corresponding":false,"raw_author_name":"Karen Meusemann","raw_affiliation_strings":["CSIRO Ecosystem Sciences, Australian National Insect Collection, Clunies Ross Street, Acton, ACT, Australia","Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"CSIRO Ecosystem Sciences, Australian National Insect Collection, Clunies Ross Street, Acton, ACT, Australia","institution_ids":["https://openalex.org/I1292875679","https://openalex.org/I4210089744","https://openalex.org/I4210166020"]},{"raw_affiliation_string":"Zoologisches Forschungsmuseum Alexander Koenig, zmb, Adenauerallee 160, 53113, Bonn, Germany","institution_ids":["https://openalex.org/I4210099549"]}]}],"institutions":[],"countries_distinct_count":3,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5068566097"],"corresponding_institution_ids":["https://openalex.org/I4210099549"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":2.3369,"has_fulltext":true,"cited_by_count":131,"citation_normalized_percentile":{"value":0.88526513,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"14","issue":"1","first_page":"348","last_page":"348"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.925599992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.925599992275238,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11354","display_name":"Evolution and Paleontology Studies","score":0.032600000500679016,"subfield":{"id":"https://openalex.org/subfields/1911","display_name":"Paleontology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T13664","display_name":"Genome Rearrangement Algorithms","score":0.00930000003427267,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.6570836305618286},{"id":"https://openalex.org/keywords/heuristics","display_name":"Heuristics","score":0.5967342853546143},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.5365669131278992},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.5236687064170837},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.4788934290409088},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.46032702922821045},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4584462642669678},{"id":"https://openalex.org/keywords/selection","display_name":"Selection (genetic algorithm)","score":0.45187681913375854},{"id":"https://openalex.org/keywords/set","display_name":"Set (abstract data type)","score":0.44970273971557617},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3592304587364197},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.34228938817977905},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.27071383595466614},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.2671046853065491},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2366025447845459},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.2229006290435791},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17917555570602417},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.13012629747390747}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.6570836305618286},{"id":"https://openalex.org/C127705205","wikidata":"https://www.wikidata.org/wiki/Q5748245","display_name":"Heuristics","level":2,"score":0.5967342853546143},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.5365669131278992},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.5236687064170837},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.4788934290409088},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.46032702922821045},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4584462642669678},{"id":"https://openalex.org/C81917197","wikidata":"https://www.wikidata.org/wiki/Q628760","display_name":"Selection (genetic algorithm)","level":2,"score":0.45187681913375854},{"id":"https://openalex.org/C177264268","wikidata":"https://www.wikidata.org/wiki/Q1514741","display_name":"Set (abstract data type)","level":2,"score":0.44970273971557617},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3592304587364197},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.34228938817977905},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.27071383595466614},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.2671046853065491},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2366025447845459},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.2229006290435791},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17917555570602417},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.13012629747390747},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C111919701","wikidata":"https://www.wikidata.org/wiki/Q9135","display_name":"Operating system","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002417","descriptor_name":"Cattle","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D002965","descriptor_name":"Classification","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004260","descriptor_name":"DNA Repair","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004260","descriptor_name":"DNA Repair","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004260","descriptor_name":"DNA Repair","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011336","descriptor_name":"Probability","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011897","descriptor_name":"Random Allocation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011897","descriptor_name":"Random Allocation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011897","descriptor_name":"Random Allocation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019143","descriptor_name":"Evolution, Molecular","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D034421","descriptor_name":"Sus scrofa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034421","descriptor_name":"Sus scrofa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D034421","descriptor_name":"Sus scrofa","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051379","descriptor_name":"Mice","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D051381","descriptor_name":"Rats","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-14-348","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-348","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-348","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24299043","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24299043","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Comparative Study"},{"id":"pmh:oai:europepmc.org:2883552","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3890606","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3890606","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3890606","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-348","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-348","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-348","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2026775160.pdf","grobid_xml":"https://content.openalex.org/works/W2026775160.grobid-xml"},"referenced_works_count":65,"referenced_works":["https://openalex.org/W95462732","https://openalex.org/W192462150","https://openalex.org/W1486971209","https://openalex.org/W1791298052","https://openalex.org/W1965403600","https://openalex.org/W1965612692","https://openalex.org/W1969050775","https://openalex.org/W1974772988","https://openalex.org/W1974924902","https://openalex.org/W1980503920","https://openalex.org/W1986481982","https://openalex.org/W1989032832","https://openalex.org/W1989816352","https://openalex.org/W1991821268","https://openalex.org/W1997227452","https://openalex.org/W1999279928","https://openalex.org/W2010879590","https://openalex.org/W2016838944","https://openalex.org/W2019182846","https://openalex.org/W2027347467","https://openalex.org/W2033462054","https://openalex.org/W2056568233","https://openalex.org/W2058735669","https://openalex.org/W2058938859","https://openalex.org/W2062018285","https://openalex.org/W2062253327","https://openalex.org/W2064376895","https://openalex.org/W2082176153","https://openalex.org/W2082473664","https://openalex.org/W2082556855","https://openalex.org/W2085822559","https://openalex.org/W2095024000","https://openalex.org/W2095170728","https://openalex.org/W2096641211","https://openalex.org/W2104268875","https://openalex.org/W2109291623","https://openalex.org/W2123364467","https://openalex.org/W2125359798","https://openalex.org/W2127063840","https://openalex.org/W2127474816","https://openalex.org/W2128701823","https://openalex.org/W2129974570","https://openalex.org/W2130044459","https://openalex.org/W2133909824","https://openalex.org/W2137076742","https://openalex.org/W2137614260","https://openalex.org/W2140099453","https://openalex.org/W2140689424","https://openalex.org/W2143076415","https://openalex.org/W2143210482","https://openalex.org/W2147070102","https://openalex.org/W2149729335","https://openalex.org/W2151736966","https://openalex.org/W2152933358","https://openalex.org/W2159310387","https://openalex.org/W2163970999","https://openalex.org/W2166371583","https://openalex.org/W2167193190","https://openalex.org/W2168167358","https://openalex.org/W2168198916","https://openalex.org/W2171746679","https://openalex.org/W2180357446","https://openalex.org/W2333546695","https://openalex.org/W4231070980","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2280422768","https://openalex.org/W3143197806","https://openalex.org/W4252555497","https://openalex.org/W3121175838","https://openalex.org/W3016293053","https://openalex.org/W2401723157","https://openalex.org/W2362218761","https://openalex.org/W2062354928","https://openalex.org/W2113708670","https://openalex.org/W2088120817"],"abstract_inverted_index":{"BACKGROUND:":[0],"Character":[1],"matrices":[2,61,126,146],"with":[3,12,31,101,108,116,133,153,180,201,247,255,299],"extensive":[4],"missing":[5],"data":[6,33,44,53,60,102,140,160,178,199,232,245,277,301],"are":[7,39],"frequently":[8],"used":[9,292],"in":[10,51,62,80,92],"phylogenomics":[11],"potentially":[13],"detrimental":[14],"effects":[15],"on":[16,43,229,285],"the":[17,52,181,186,202,213,290],"accuracy":[18],"and":[19,29,104,139,159,251,275,297],"robustness":[20],"of":[21,36,48,64,90,97,127,147,176,198,222,236,266,273,295],"tree":[22,167,254],"inference.":[23],"Therefore,":[24],"many":[25],"investigators":[26],"select":[27],"taxa":[28,129,149,296],"genes":[30,91,132,138,152,158,267,298],"high":[32,117,248,256,300],"coverage.":[34,302],"Drawbacks":[35],"these":[37],"selections":[38,294],"their":[40],"exclusive":[41],"reliance":[42],"coverage":[45,103,141,161],"without":[46],"consideration":[47],"actual":[49],"signal":[50,99,136,156],"which":[54,85],"might,":[55],"thus,":[56],"not":[57],"deliver":[58],"optimal":[59],"terms":[63],"potential":[65,98],"phylogenetic":[66,135,155],"signal.":[67],"In":[68],"order":[69],"to":[70,114,170,188],"circumvent":[71],"this":[72,240],"problem,":[73],"we":[74],"have":[75],"developed":[76],"a":[77,81,95,109,177,218,244,253,286],"heuristics":[78],"implemented":[79],"software":[82],"called":[83],"mare":[84],"(1)":[86],"assesses":[87],"information":[88,119,214,221,249,264],"content":[89,215,250,265],"supermatrices":[93,107,281],"using":[94,125],"measure":[96],"combined":[100],"(2)":[105],"reduces":[106],"simple":[110,205,219,293],"hill":[111,206],"climbing":[112,207],"procedure":[113,208],"submatrices":[115],"total":[118],"content.":[120],"We":[121,224],"conducted":[122],"simulation":[123],"studies":[124],"50":[128,131,148,151],"\u00d7":[130,150],"heterogeneous":[134,154],"among":[137,157],"between":[142,162],"10-30%.":[143],"RESULTS:":[144],"With":[145,239],"10-30%":[163],"Maximum":[164],"Likelihood":[165],"(ML)":[166],"reconstructions":[168],"failed":[169],"recover":[171,189],"correct":[172,190],"trees.":[173],"A":[174],"selection":[175,197],"subset":[179,246],"herein":[182,203],"proposed":[183,204],"approach":[184,228],"increased":[185],"chance":[187],"partial":[191],"trees":[192],"more":[193],"than":[194],"10-fold.":[195],"The":[196],"subsets":[200],"performed":[209],"well":[210],"either":[211],"considering":[212],"or":[216],"just":[217],"presence/absence":[220],"genes.":[223],"also":[225],"applied":[226],"our":[227],"an":[230],"empirical":[231,241,276],"set,":[233],"addressing":[234],"questions":[235],"vertebrate":[237],"systematics.":[238],"dataset":[242],"selecting":[243],"supporting":[252],"average":[257],"boostrap":[258],"support":[259],"was":[260,268],"most":[261],"successful":[262],"if":[263],"considered.":[269],"CONCLUSIONS:":[270],"Our":[271],"analyses":[272],"simulated":[274],"demonstrate":[278],"that":[279],"sparse":[280],"can":[282],"be":[283],"reduced":[284],"formal":[287],"basis":[288],"outperforming":[289],"usually":[291]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":7},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":4},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":40},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":9},{"year":2018,"cited_by_count":17},{"year":2017,"cited_by_count":14},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":9},{"year":2014,"cited_by_count":4}],"updated_date":"2026-08-21T09:56:20.448147","created_date":"2025-10-10T00:00:00"}
