{"id":"https://openalex.org/W2124208240","doi":"https://doi.org/10.1186/1471-2105-14-289","title":"Calculation of Tajima\u2019s D and other neutrality test statistics from low depth next-generation sequencing data","display_name":"Calculation of Tajima\u2019s D and other neutrality test statistics from low depth next-generation sequencing data","publication_year":2013,"publication_date":"2013-10-02","ids":{"openalex":"https://openalex.org/W2124208240","doi":"https://doi.org/10.1186/1471-2105-14-289","mag":"2124208240","pmid":"https://pubmed.ncbi.nlm.nih.gov/24088262"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-289","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-289","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-289","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-289","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090964821","display_name":"Thorfinn Sand Korneliussen","orcid":"https://orcid.org/0000-0001-7576-5380"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I4210110903","display_name":"Natural History Museum Aarhus","ror":"https://ror.org/0166x0j30","country_code":"DK","type":"archive","lineage":["https://openalex.org/I4210110903"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Thorfinn Sand Korneliussen","raw_affiliation_strings":["Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Oestervoldgade 5-7, DK-1350, Copenhagen, Denmark. thorfinn@binf.ku.dk","Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Oestervoldgade 5-7, DK-1350, Copenhagen, Denmark. thorfinn@binf.ku.dk","institution_ids":["https://openalex.org/I4210110903"]},{"raw_affiliation_string":"Centre for GeoGenetics, Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696","https://openalex.org/I4210110903"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055365056","display_name":"Ida Moltke","orcid":"https://orcid.org/0000-0001-7052-8554"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]},{"id":"https://openalex.org/I40347166","display_name":"University of Chicago","ror":"https://ror.org/024mw5h28","country_code":"US","type":"education","lineage":["https://openalex.org/I40347166"]}],"countries":["DK","US"],"is_corresponding":false,"raw_author_name":"Ida Moltke","raw_affiliation_strings":["The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark","Department of Human Genetics, University of Chicago, Chicago, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"Department of Human Genetics, University of Chicago, Chicago, USA","institution_ids":["https://openalex.org/I40347166"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5003488251","display_name":"Anders Albrechtsen","orcid":"https://orcid.org/0000-0001-7306-031X"},"institutions":[{"id":"https://openalex.org/I124055696","display_name":"University of Copenhagen","ror":"https://ror.org/035b05819","country_code":"DK","type":"education","lineage":["https://openalex.org/I124055696"]}],"countries":["DK"],"is_corresponding":false,"raw_author_name":"Anders Albrechtsen","raw_affiliation_strings":["Department of Biology, University of Copenhagen, Ole Maaloes Vej 5, DK-2200, Copenhagen, Denmark","The Bioinformatics Centre,","The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biology, University of Copenhagen, Ole Maaloes Vej 5, DK-2200, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]},{"raw_affiliation_string":"The Bioinformatics Centre,","institution_ids":[]},{"raw_affiliation_string":"The Bioinformatics Centre, Department of Biology, University of Copenhagen, Copenhagen, Denmark","institution_ids":["https://openalex.org/I124055696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5088476239","display_name":"Rasmus Nielsen","orcid":"https://orcid.org/0000-0003-0513-6591"},"institutions":[{"id":"https://openalex.org/I134446601","display_name":"Berkeley College","ror":"https://ror.org/02xewxa75","country_code":"US","type":"education","lineage":["https://openalex.org/I134446601"]},{"id":"https://openalex.org/I4210090300","display_name":"Acupuncture & Integrative Medicine College","ror":"https://ror.org/00b6wzg36","country_code":"US","type":"education","lineage":["https://openalex.org/I4210090300"]},{"id":"https://openalex.org/I95457486","display_name":"University of California, Berkeley","ror":"https://ror.org/01an7q238","country_code":"US","type":"education","lineage":["https://openalex.org/I95457486"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Rasmus Nielsen","raw_affiliation_strings":["Departments of Integrative Biology and Statistics, UC-Berkeley, 4098 VLSB, Berkeley, California 94720, USA","Departments of Integrative Biology and Statistics, UC-Berkeley, Berkeley, California, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Departments of Integrative Biology and Statistics, UC-Berkeley, 4098 VLSB, Berkeley, California 94720, USA","institution_ids":["https://openalex.org/I134446601","https://openalex.org/I4210090300","https://openalex.org/I95457486"]},{"raw_affiliation_string":"Departments of Integrative Biology and Statistics, UC-Berkeley, Berkeley, California, USA","institution_ids":["https://openalex.org/I95457486"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":[],"corresponding_institution_ids":[],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":8.8568,"has_fulltext":true,"cited_by_count":309,"citation_normalized_percentile":{"value":0.98260982,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"14","issue":"1","first_page":"289","last_page":"289"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.5175999999046326,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10012","display_name":"Genetic diversity and population structure","score":0.5175999999046326,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10594","display_name":"Genetic and phenotypic traits in livestock","score":0.18150000274181366,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10751","display_name":"Forensic and Genetic Research","score":0.1160999983549118,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/statistics","display_name":"Statistics","score":0.5084399580955505},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.3904949128627777},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.320543110370636},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.1760527789592743}],"concepts":[{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.5084399580955505},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.3904949128627777},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.320543110370636},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.1760527789592743}],"mesh":[{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001483","descriptor_name":"Base Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005240","descriptor_name":"Feasibility Studies","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005787","descriptor_name":"Gene Frequency","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005828","descriptor_name":"Genetics, Population","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012641","descriptor_name":"Selection, Genetic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015982","descriptor_name":"Bias","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-14-289","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-289","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-289","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24088262","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24088262","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/6e11e799-8bed-42cb-b200-1d81e6f91ba5","is_oa":true,"landing_page_url":"https://curis.ku.dk/portal/da/publications/calculation-of-tajimas-d-and-other-neutrality-test-statistics-from-low-depth-nextgeneration-sequencing-data(6e11e799-8bed-42cb-b200-1d81e6f91ba5).html","pdf_url":"https://curis.ku.dk/ws/files/91902596/Calculation_of_Tajima_s_D_and_other_neutrality_test.pdf","source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Korneliussen , T S , Moltke , I , Albrechtsen , A & Nielsen , R 2013 , ' Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data ' , B M C Bioinformatics , vol. 14 , 289 . https://doi.org/10.1186/1471-2105-14-289","raw_type":"article"},{"id":"pmh:oai:pure.atira.dk:publications/6e11e799-8bed-42cb-b200-1d81e6f91ba5","is_oa":true,"landing_page_url":"https://researchprofiles.ku.dk/da/publications/6e11e799-8bed-42cb-b200-1d81e6f91ba5","pdf_url":"https://researchprofiles.ku.dk/files/91902596/Calculation_of_Tajima_s_D_and_other_neutrality_test.pdf","source":{"id":"https://openalex.org/S4306401983","display_name":"Research at the University of Copenhagen (University of Copenhagen)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I124055696","host_organization_name":"University of Copenhagen","host_organization_lineage":["https://openalex.org/I124055696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Korneliussen , T S , Moltke , I , Albrechtsen , A & Nielsen , R 2013 , ' Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data ' , B M C Bioinformatics , vol. 14 , 289 . https://doi.org/10.1186/1471-2105-14-289","raw_type":"article"},{"id":"pmh:oai:escholarship.org/ark:/13030/qt6dw0g4bz","is_oa":false,"landing_page_url":"https://escholarship.org/uc/item/6dw0g4bz","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol 14, iss 1","raw_type":"article"},{"id":"pmh:oai:europepmc.org:3005793","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/4015034","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:qt6dw0g4bz","is_oa":false,"landing_page_url":"http://www.escholarship.org/uc/item/6dw0g4bz","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Korneliussen, Thorfinn Sand; Moltke, Ida; Albrechtsen, Anders; &amp; Nielsen, Rasmus. (2013). Calculation of Tajima's D and other neutrality test statistics from low depth next-generation sequencing data. BMC Bioinformatics, 14(1), 289. doi: http://dx.doi.org/10.1186/1471-2105-14-289. Retrieved from: http://www.escholarship.org/uc/item/6dw0g4bz","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-289","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-289","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-289","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/12","score":0.41999998688697815,"display_name":"Responsible consumption and production"}],"awards":[{"id":"https://openalex.org/G1628407718","display_name":null,"funder_award_id":"DNRF94","funder_id":"https://openalex.org/F4320320943","funder_display_name":"Danmarks Grundforskningsfond"},{"id":"https://openalex.org/G4411660797","display_name":null,"funder_award_id":"00007171","funder_id":"https://openalex.org/F4320310490","funder_display_name":"Villum Fonden"}],"funders":[{"id":"https://openalex.org/F4320310490","display_name":"Villum Fonden","ror":"https://ror.org/007ww2d15"},{"id":"https://openalex.org/F4320320671","display_name":"National Research Foundation","ror":"https://ror.org/05s0g1g46"},{"id":"https://openalex.org/F4320320943","display_name":"Danmarks Grundforskningsfond","ror":"https://ror.org/00znyv691"},{"id":"https://openalex.org/F4320322928","display_name":"Danmarks Frie Forskningsfond","ror":"https://ror.org/02sptwz63"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2124208240.pdf","grobid_xml":"https://content.openalex.org/works/W2124208240.grobid-xml"},"referenced_works_count":48,"referenced_works":["https://openalex.org/W1536721400","https://openalex.org/W1932538605","https://openalex.org/W1952185996","https://openalex.org/W1963751872","https://openalex.org/W1973513517","https://openalex.org/W1986132144","https://openalex.org/W2001725958","https://openalex.org/W2005287518","https://openalex.org/W2012840904","https://openalex.org/W2025253353","https://openalex.org/W2033995133","https://openalex.org/W2037710951","https://openalex.org/W2055055216","https://openalex.org/W2082967637","https://openalex.org/W2094210438","https://openalex.org/W2098460741","https://openalex.org/W2103903744","https://openalex.org/W2109494273","https://openalex.org/W2112113834","https://openalex.org/W2116668053","https://openalex.org/W2118526609","https://openalex.org/W2119180969","https://openalex.org/W2119279196","https://openalex.org/W2120571246","https://openalex.org/W2121286926","https://openalex.org/W2124960286","https://openalex.org/W2125300654","https://openalex.org/W2128016314","https://openalex.org/W2132393729","https://openalex.org/W2140784970","https://openalex.org/W2142403957","https://openalex.org/W2144658220","https://openalex.org/W2145059063","https://openalex.org/W2145371252","https://openalex.org/W2146405782","https://openalex.org/W2147575903","https://openalex.org/W2148181482","https://openalex.org/W2150131459","https://openalex.org/W2156171251","https://openalex.org/W2156595979","https://openalex.org/W2156866331","https://openalex.org/W2157149092","https://openalex.org/W2162289196","https://openalex.org/W2168133698","https://openalex.org/W2169421412","https://openalex.org/W2171777347","https://openalex.org/W2885727518","https://openalex.org/W4213279074"],"related_works":["https://openalex.org/W4391375266","https://openalex.org/W2082860237","https://openalex.org/W2119695867","https://openalex.org/W2130076355","https://openalex.org/W1990804418","https://openalex.org/W1993764875","https://openalex.org/W2046158694","https://openalex.org/W2788277189","https://openalex.org/W2013243191","https://openalex.org/W1971568933"],"abstract_inverted_index":{"BACKGROUND:":[0],"A":[1,101],"number":[2],"of":[3,21,39,47,74,90,104,114,181],"different":[4],"statistics":[5,17,30],"are":[6,19,31,53,169],"used":[7],"for":[8,128,148,158],"detecting":[9],"natural":[10],"selection":[11],"using":[12],"DNA":[13],"sequencing":[14,58,66,116],"data,":[15],"including":[16],"that":[18,86,108,153],"summaries":[20],"the":[22,37,60,72,75,88,91,112,122,129,167,176,184],"frequency":[23,48,96],"spectrum,":[24],"such":[25],"as":[26],"Tajima's":[27],"D.":[28],"These":[29],"now":[32],"often":[33],"being":[34],"applied":[35],"in":[36,65,71,178,192],"analysis":[38,130,180],"Next":[40],"Generation":[41],"Sequencing":[42],"(NGS)":[43],"data.":[44],"However,":[45],"estimates":[46],"spectra":[49],"from":[50,183],"NGS":[51,160],"data":[52,92,119,161,182],"strongly":[54],"affected":[55],"by":[56,137],"low":[57],"coverage;":[59],"inherent":[61],"technology":[62],"dependent":[63],"variation":[64],"depth":[67],"causes":[68],"systematic":[69],"differences":[70],"value":[73],"statistic":[76],"among":[77],"genomic":[78],"regions.":[79],"RESULTS:":[80],"We":[81,173],"have":[82],"developed":[83],"an":[84,144,179],"approach":[85,106,147],"accommodates":[87],"uncertainty":[89],"when":[93,166],"calculating":[94],"site":[95],"based":[97],"neutrality":[98,202],"test":[99],"statistics.":[100],"salient":[102],"feature":[103],"this":[105,154],"is":[107,190],"it":[109],"implicitly":[110],"solves":[111],"problems":[113,135],"varying":[115],"depth,":[117],"missing":[118],"and":[120,131],"avoids":[121,133],"need":[123],"to":[124,163,199],"infer":[125],"variable":[126],"sites":[127],"thereby":[132],"ascertainment":[134],"introduced":[136],"a":[138,193,205],"SNP":[139],"discovery":[140],"process.":[141],"CONCLUSION:":[142],"Using":[143],"empirical":[145],"Bayes":[146],"fast":[149,194],"computations,":[150],"we":[151],"show":[152],"method":[155,177,189],"produces":[156],"results":[157],"low-coverage":[159],"comparable":[162],"those":[164],"achieved":[165],"genotypes":[168],"known":[170],"without":[171],"uncertainty.":[172],"also":[174],"validate":[175],"1000":[185],"genomes":[186],"project.":[187],"The":[188],"implemented":[191],"framework":[195],"which":[196],"enables":[197],"researchers":[198],"perform":[200],"these":[201],"tests":[203],"on":[204],"genome-wide":[206],"scale.":[207]},"counts_by_year":[{"year":2026,"cited_by_count":11},{"year":2025,"cited_by_count":27},{"year":2024,"cited_by_count":31},{"year":2023,"cited_by_count":29},{"year":2022,"cited_by_count":27},{"year":2021,"cited_by_count":53},{"year":2020,"cited_by_count":33},{"year":2019,"cited_by_count":21},{"year":2018,"cited_by_count":15},{"year":2017,"cited_by_count":20},{"year":2016,"cited_by_count":17},{"year":2015,"cited_by_count":12},{"year":2014,"cited_by_count":12},{"year":2013,"cited_by_count":1}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
