{"id":"https://openalex.org/W2168930979","doi":"https://doi.org/10.1186/1471-2105-14-285","title":"Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction","display_name":"Using PPI network autocorrelation in hierarchical multi-label classification trees for gene function prediction","publication_year":2013,"publication_date":"2013-09-26","ids":{"openalex":"https://openalex.org/W2168930979","doi":"https://doi.org/10.1186/1471-2105-14-285","mag":"2168930979","pmid":"https://pubmed.ncbi.nlm.nih.gov/24070402"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-285","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-285","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-285","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-285","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5014284258","display_name":"Daniela Stojanova","orcid":null},"institutions":[{"id":"https://openalex.org/I3006985408","display_name":"Jo\u017eef Stefan Institute","ror":"https://ror.org/05060sz93","country_code":"SI","type":"facility","lineage":["https://openalex.org/I3006985408"]}],"countries":["SI"],"is_corresponding":true,"raw_author_name":"Daniela Stojanova","raw_affiliation_strings":["Department of Knowledge Technologies, Jo\u017def Stefan Institute, Jamova cesta 39, Ljubljana, Slovenia. daniela.stojanova@ijs.si","Department of Knowledge Technologies, Jo\u017eef Stefan Institute, Jamova cesta 39, Ljubljana, Slovenia"],"affiliations":[{"raw_affiliation_string":"Department of Knowledge Technologies, Jo\u017def Stefan Institute, Jamova cesta 39, Ljubljana, Slovenia. daniela.stojanova@ijs.si","institution_ids":[]},{"raw_affiliation_string":"Department of Knowledge Technologies, Jo\u017eef Stefan Institute, Jamova cesta 39, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I3006985408"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073750332","display_name":"Michelangelo Ceci","orcid":"https://orcid.org/0000-0002-6690-7583"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Michelangelo Ceci","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 degli Studi di Bari \"Aldo Moro\", via Orabona 4, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 degli Studi di Bari \"Aldo Moro\", via Orabona 4, Bari, Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035789137","display_name":"Donato Malerba","orcid":"https://orcid.org/0000-0001-8432-4608"},"institutions":[{"id":"https://openalex.org/I5561750","display_name":"University of Bari Aldo Moro","ror":"https://ror.org/027ynra39","country_code":"IT","type":"education","lineage":["https://openalex.org/I5561750"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Donato Malerba","raw_affiliation_strings":["Dipartimento di Informatica, Universit\u00e0 degli Studi di Bari \"Aldo Moro\", via Orabona 4, Bari, Italy"],"affiliations":[{"raw_affiliation_string":"Dipartimento di Informatica, Universit\u00e0 degli Studi di Bari \"Aldo Moro\", via Orabona 4, Bari, Italy","institution_ids":["https://openalex.org/I5561750"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5064609702","display_name":"Sa\u0161o D\u017eeroski","orcid":"https://orcid.org/0000-0003-2363-712X"},"institutions":[{"id":"https://openalex.org/I4210156584","display_name":"Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins","ror":"https://ror.org/05g2jnh09","country_code":"SI","type":"facility","lineage":["https://openalex.org/I4210156584"]},{"id":"https://openalex.org/I3006985408","display_name":"Jo\u017eef Stefan Institute","ror":"https://ror.org/05060sz93","country_code":"SI","type":"facility","lineage":["https://openalex.org/I3006985408"]},{"id":"https://openalex.org/I4210113529","display_name":"Jo\u017eef Stefan International Postgraduate School","ror":"https://ror.org/01hdkb925","country_code":"SI","type":"education","lineage":["https://openalex.org/I4210113529"]}],"countries":["SI"],"is_corresponding":false,"raw_author_name":"Saso Dzeroski","raw_affiliation_strings":["Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Jamova 39, 1000, Ljubljana, Slovenia","Department of Knowledge Technologies, Jo\u017eef Stefan Institute, Jamova cesta 39, Ljubljana, Slovenia","Jo\u017eef Stefan International Postgraduate School, Jamova 39, 1000, Ljubljana, Slovenia"],"affiliations":[{"raw_affiliation_string":"Centre of Excellence for Integrated Approaches in Chemistry and Biology of Proteins, Jamova 39, 1000, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210156584"]},{"raw_affiliation_string":"Department of Knowledge Technologies, Jo\u017eef Stefan Institute, Jamova cesta 39, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I3006985408"]},{"raw_affiliation_string":"Jo\u017eef Stefan International Postgraduate School, Jamova 39, 1000, Ljubljana, Slovenia","institution_ids":["https://openalex.org/I4210113529"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5014284258"],"corresponding_institution_ids":["https://openalex.org/I3006985408"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3957,"has_fulltext":true,"cited_by_count":50,"citation_normalized_percentile":{"value":0.89182987,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"14","issue":"1","first_page":"285","last_page":"285"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.9973999857902527,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10211","display_name":"Computational Drug Discovery Methods","score":0.9916999936103821,"subfield":{"id":"https://openalex.org/subfields/1703","display_name":"Computational Theory and Mathematics"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6801919341087341},{"id":"https://openalex.org/keywords/autocorrelation","display_name":"Autocorrelation","score":0.6232604384422302},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.5969460606575012},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.593795120716095},{"id":"https://openalex.org/keywords/protein-function-prediction","display_name":"Protein function prediction","score":0.5871767401695251},{"id":"https://openalex.org/keywords/function","display_name":"Function (biology)","score":0.5481175184249878},{"id":"https://openalex.org/keywords/class","display_name":"Class (philosophy)","score":0.5425584316253662},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.46325406432151794},{"id":"https://openalex.org/keywords/gene-ontology","display_name":"Gene ontology","score":0.44251203536987305},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4237891435623169},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.22995412349700928},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.14415884017944336},{"id":"https://openalex.org/keywords/protein-function","display_name":"Protein function","score":0.14122185111045837},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.1342446506023407}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6801919341087341},{"id":"https://openalex.org/C5297727","wikidata":"https://www.wikidata.org/wiki/Q786970","display_name":"Autocorrelation","level":2,"score":0.6232604384422302},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.5969460606575012},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.593795120716095},{"id":"https://openalex.org/C207060522","wikidata":"https://www.wikidata.org/wiki/Q7251473","display_name":"Protein function prediction","level":4,"score":0.5871767401695251},{"id":"https://openalex.org/C14036430","wikidata":"https://www.wikidata.org/wiki/Q3736076","display_name":"Function (biology)","level":2,"score":0.5481175184249878},{"id":"https://openalex.org/C2777212361","wikidata":"https://www.wikidata.org/wiki/Q5127848","display_name":"Class (philosophy)","level":2,"score":0.5425584316253662},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.46325406432151794},{"id":"https://openalex.org/C2987395477","wikidata":"https://www.wikidata.org/wiki/Q135085","display_name":"Gene ontology","level":4,"score":0.44251203536987305},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4237891435623169},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.22995412349700928},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.14415884017944336},{"id":"https://openalex.org/C2986374874","wikidata":"https://www.wikidata.org/wiki/Q8054","display_name":"Protein function","level":3,"score":0.14122185111045837},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.1342446506023407},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0},{"id":"https://openalex.org/C105795698","wikidata":"https://www.wikidata.org/wiki/Q12483","display_name":"Statistics","level":1,"score":0.0},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.0},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C134306372","wikidata":"https://www.wikidata.org/wiki/Q7754","display_name":"Mathematical analysis","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D029701","descriptor_name":"Saccharomyces cerevisiae Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058977","descriptor_name":"Molecular Sequence Annotation","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D063990","descriptor_name":"Gene Ontology","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-14-285","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-285","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-285","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24070402","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24070402","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2847282","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3850549","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:ricerca.uniba.it:11586/115535","is_oa":true,"landing_page_url":"http://www.biomedcentral.com/1471-2105/14/285","pdf_url":null,"source":{"id":"https://openalex.org/S4377196296","display_name":"CINECA IRIS Institutional Research Information System (University of Bari Aldo Moro)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I5561750","host_organization_name":"University of Bari Aldo Moro","host_organization_lineage":["https://openalex.org/I5561750"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-285","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-285","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-285","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2214008897","display_name":null,"funder_award_id":"266722","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3106033258","display_name":null,"funder_award_id":"612944","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G3875748329","display_name":null,"funder_award_id":"European Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G4358921014","display_name":null,"funder_award_id":"ICT-2011","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G5077087964","display_name":null,"funder_award_id":"1.1.2","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G5811610961","display_name":null,"funder_award_id":"612944","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G6221035456","display_name":null,"funder_award_id":"OP13.1.1.2.02.0005","funder_id":"https://openalex.org/F4320335322","funder_display_name":"European Regional Development Fund"},{"id":"https://openalex.org/G7530123626","display_name":null,"funder_award_id":"P2-0103","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G7865791931","display_name":null,"funder_award_id":"ICT-2013-612944","funder_id":"https://openalex.org/F4320322554","funder_display_name":"Javna Agencija za Raziskovalno Dejavnost RS"},{"id":"https://openalex.org/G8051717526","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8538941428","display_name":null,"funder_award_id":"Regional Development Fund","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8586694874","display_name":null,"funder_award_id":"ICT-2013-612944","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8703342860","display_name":null,"funder_award_id":"MAESTRA","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"},{"id":"https://openalex.org/G8839529339","display_name":null,"funder_award_id":"287713","funder_id":"https://openalex.org/F4320320300","funder_display_name":"European Commission"}],"funders":[{"id":"https://openalex.org/F4320320300","display_name":"European Commission","ror":"https://ror.org/00k4n6c32"},{"id":"https://openalex.org/F4320322554","display_name":"Javna Agencija za Raziskovalno Dejavnost RS","ror":"https://ror.org/059bp8k51"},{"id":"https://openalex.org/F4320335322","display_name":"European Regional Development Fund","ror":"https://ror.org/00k4n6c32"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2168930979.pdf","grobid_xml":"https://content.openalex.org/works/W2168930979.grobid-xml"},"referenced_works_count":60,"referenced_works":["https://openalex.org/W106675840","https://openalex.org/W108600343","https://openalex.org/W175224639","https://openalex.org/W1500477194","https://openalex.org/W1504694836","https://openalex.org/W1549710828","https://openalex.org/W1576962511","https://openalex.org/W1849803292","https://openalex.org/W1963838563","https://openalex.org/W1967542092","https://openalex.org/W1988841006","https://openalex.org/W1995407213","https://openalex.org/W2011986160","https://openalex.org/W2042210880","https://openalex.org/W2053621743","https://openalex.org/W2060900933","https://openalex.org/W2061453990","https://openalex.org/W2062649377","https://openalex.org/W2068590125","https://openalex.org/W2075006095","https://openalex.org/W2077593512","https://openalex.org/W2082380079","https://openalex.org/W2089792340","https://openalex.org/W2089933214","https://openalex.org/W2094129019","https://openalex.org/W2098057602","https://openalex.org/W2099438806","https://openalex.org/W2103017472","https://openalex.org/W2106074416","https://openalex.org/W2112219590","https://openalex.org/W2113988163","https://openalex.org/W2117486996","https://openalex.org/W2117780085","https://openalex.org/W2124842489","https://openalex.org/W2125055259","https://openalex.org/W2125922907","https://openalex.org/W2130948145","https://openalex.org/W2131456688","https://openalex.org/W2137786672","https://openalex.org/W2137810087","https://openalex.org/W2137917513","https://openalex.org/W2140611547","https://openalex.org/W2143022286","https://openalex.org/W2146545950","https://openalex.org/W2155440340","https://openalex.org/W2155968618","https://openalex.org/W2158714788","https://openalex.org/W2158933803","https://openalex.org/W2163485494","https://openalex.org/W2166468869","https://openalex.org/W2166985665","https://openalex.org/W2169896388","https://openalex.org/W2171403830","https://openalex.org/W2172049947","https://openalex.org/W2287132924","https://openalex.org/W2496675188","https://openalex.org/W2573715514","https://openalex.org/W2952639490","https://openalex.org/W4246925013","https://openalex.org/W4293282039"],"related_works":["https://openalex.org/W3132344302","https://openalex.org/W2082380079","https://openalex.org/W2061838210","https://openalex.org/W2033366093","https://openalex.org/W2039416962","https://openalex.org/W3104092632","https://openalex.org/W2060079687","https://openalex.org/W2411047100","https://openalex.org/W2143801201","https://openalex.org/W2168118433"],"abstract_inverted_index":{"Our":[0],"newly":[1],"developed":[2],"method":[3],"for":[4,17,47],"HMC":[5],"takes":[6],"into":[7],"account":[8],"network":[9,31,65],"information":[10],"in":[11,21],"the":[12,22,27,34,38,63],"learning":[13],"phase:":[14],"When":[15],"used":[16],"gene":[18,49],"function":[19],"prediction":[20],"context":[23],"of":[24,30,37,73],"PPI":[25,56,64],"networks,":[26],"explicit":[28],"consideration":[29],"autocorrelation":[32],"increases":[33],"predictive":[35],"performance":[36],"learned":[39],"models.":[40],"Overall,":[41],"we":[42],"found":[43],"that":[44],"this":[45],"holds":[46],"different":[48],"features/":[50],"descriptions,":[51],"functional":[52],"annotation":[53],"schemes,":[54],"and":[55,68],"networks:":[57],"Best":[58],"results":[59],"are":[60],"achieved":[61],"when":[62],"is":[66],"dense":[67],"contains":[69],"a":[70],"large":[71],"proportion":[72],"function-relevant":[74],"interactions.":[75]},"counts_by_year":[{"year":2025,"cited_by_count":2},{"year":2024,"cited_by_count":6},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":3},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":8},{"year":2016,"cited_by_count":4},{"year":2015,"cited_by_count":7},{"year":2014,"cited_by_count":5}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
