{"id":"https://openalex.org/W1988917080","doi":"https://doi.org/10.1186/1471-2105-14-273","title":"Learning a Markov Logic network for supervised gene regulatory network inference","display_name":"Learning a Markov Logic network for supervised gene regulatory network inference","publication_year":2013,"publication_date":"2013-09-12","ids":{"openalex":"https://openalex.org/W1988917080","doi":"https://doi.org/10.1186/1471-2105-14-273","mag":"1988917080","pmid":"https://pubmed.ncbi.nlm.nih.gov/24028533"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-273","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-273","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-273","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-273","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5008589136","display_name":"C\u00e9line Brouard","orcid":"https://orcid.org/0000-0002-5574-7027"},"institutions":[{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"C\u00e9line Brouard","raw_affiliation_strings":["IBISC EA 4526, Universit\u00e9 d'\u00c9vry-Val d'Essonne, 23 Boulevard de France, 91037, \u00c9vry, France. celine.brouard@ibisc.univ-evry.fr","IBISC - Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes (40 rue du Pelvoux, Courcouronnes ; 91020 Evry Cedex - France)"],"affiliations":[{"raw_affiliation_string":"IBISC EA 4526, Universit\u00e9 d'\u00c9vry-Val d'Essonne, 23 Boulevard de France, 91037, \u00c9vry, France. celine.brouard@ibisc.univ-evry.fr","institution_ids":[]},{"raw_affiliation_string":"IBISC - Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes (40 rue du Pelvoux, Courcouronnes ; 91020 Evry Cedex - France)","institution_ids":["https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5050516915","display_name":"Christel Vrain","orcid":"https://orcid.org/0000-0003-3307-0753"},"institutions":[{"id":"https://openalex.org/I4387153997","display_name":"Laboratoire d'Informatique Fondamentale d'Orl\u00e9ans","ror":"https://ror.org/01nr3td38","country_code":null,"type":"facility","lineage":["https://openalex.org/I12449238","https://openalex.org/I4210143826","https://openalex.org/I4387153997"]},{"id":"https://openalex.org/I12449238","display_name":"Universit\u00e9 d'Orl\u00e9ans","ror":"https://ror.org/014zrew76","country_code":"FR","type":"education","lineage":["https://openalex.org/I12449238"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Christel Vrain","raw_affiliation_strings":["LIFO, Universit\u00e9 d\u2019Orl\u00e9ans, 45067, Orl\u00e9ans, France","LIFO - Laboratoire d'Informatique Fondamentale d'Orl\u00e9ans (B\u00e2timent IIIA, Rue L\u00e9onard de Vinci, B.P. 6759, F-45067 ORLEANS Cedex 2 - France)"],"affiliations":[{"raw_affiliation_string":"LIFO, Universit\u00e9 d\u2019Orl\u00e9ans, 45067, Orl\u00e9ans, France","institution_ids":["https://openalex.org/I12449238"]},{"raw_affiliation_string":"LIFO - Laboratoire d'Informatique Fondamentale d'Orl\u00e9ans (B\u00e2timent IIIA, Rue L\u00e9onard de Vinci, B.P. 6759, F-45067 ORLEANS Cedex 2 - France)","institution_ids":["https://openalex.org/I4387153997"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5114141349","display_name":"Julie Dubois","orcid":null},"institutions":[{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I12449238","display_name":"Universit\u00e9 d'Orl\u00e9ans","ror":"https://ror.org/014zrew76","country_code":"FR","type":"education","lineage":["https://openalex.org/I12449238"]},{"id":"https://openalex.org/I4387153997","display_name":"Laboratoire d'Informatique Fondamentale d'Orl\u00e9ans","ror":"https://ror.org/01nr3td38","country_code":null,"type":"facility","lineage":["https://openalex.org/I12449238","https://openalex.org/I4210143826","https://openalex.org/I4387153997"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Julie Dubois","raw_affiliation_strings":["IBISC EA 4526, Universit\u00e9 d\u2019\u00c9vry-Val d\u2019Essonne, 23 Boulevard de France, 91037, \u00c9vry, France","LIFO, Universit\u00e9 d\u2019Orl\u00e9ans, 45067, Orl\u00e9ans, France","LIFO - Laboratoire d'Informatique Fondamentale d'Orl\u00e9ans (B\u00e2timent IIIA, Rue L\u00e9onard de Vinci, B.P. 6759, F-45067 ORLEANS Cedex 2 - France)","IBISC - Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes (40 rue du Pelvoux, Courcouronnes ; 91020 Evry Cedex - France)"],"affiliations":[{"raw_affiliation_string":"IBISC EA 4526, Universit\u00e9 d\u2019\u00c9vry-Val d\u2019Essonne, 23 Boulevard de France, 91037, \u00c9vry, France","institution_ids":["https://openalex.org/I88467170"]},{"raw_affiliation_string":"LIFO, Universit\u00e9 d\u2019Orl\u00e9ans, 45067, Orl\u00e9ans, France","institution_ids":["https://openalex.org/I12449238"]},{"raw_affiliation_string":"LIFO - Laboratoire d'Informatique Fondamentale d'Orl\u00e9ans (B\u00e2timent IIIA, Rue L\u00e9onard de Vinci, B.P. 6759, F-45067 ORLEANS Cedex 2 - France)","institution_ids":["https://openalex.org/I4387153997"]},{"raw_affiliation_string":"IBISC - Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes (40 rue du Pelvoux, Courcouronnes ; 91020 Evry Cedex - France)","institution_ids":["https://openalex.org/I4210107733"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073066369","display_name":"David Castel","orcid":"https://orcid.org/0000-0003-0247-080X"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I4210113668","display_name":"Direction de la Recherche Fondamentale","ror":"https://ror.org/01yvj5k91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2738703131","https://openalex.org/I4210113668"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"David Castel","raw_affiliation_strings":["CEA/IRCM/LEFG, 91057, Evry, France","CEA/IRCM/LEFG (CEA/IRCM/LEFG, 91057 Evry, France - France)"],"affiliations":[{"raw_affiliation_string":"CEA/IRCM/LEFG, 91057, Evry, France","institution_ids":["https://openalex.org/I2738703131","https://openalex.org/I4210113668"]},{"raw_affiliation_string":"CEA/IRCM/LEFG (CEA/IRCM/LEFG, 91057 Evry, France - France)","institution_ids":["https://openalex.org/I2738703131"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5020912232","display_name":"Marie\u2010Anne Debily","orcid":"https://orcid.org/0000-0002-8509-6165"},"institutions":[{"id":"https://openalex.org/I2738703131","display_name":"Commissariat \u00e0 l'\u00c9nergie Atomique et aux \u00c9nergies Alternatives","ror":"https://ror.org/00jjx8s55","country_code":"FR","type":"funder","lineage":["https://openalex.org/I2738703131"]},{"id":"https://openalex.org/I4210113668","display_name":"Direction de la Recherche Fondamentale","ror":"https://ror.org/01yvj5k91","country_code":"FR","type":"facility","lineage":["https://openalex.org/I2738703131","https://openalex.org/I4210113668"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-Anne Debily","raw_affiliation_strings":["CEA/IRCM/LEFG, 91057, Evry, France","Universit\u00e9 d\u2019\u00c9vry-Val d\u2019Essonne, 91037, \u00c9vry, France","CEA/IRCM/LEFG (CEA/IRCM/LEFG, 91057 Evry, France - France)","UEVE - Universit\u00e9 d'\u00c9vry-Val-d'Essonne (Boulevard Fran\u00e7ois Mitterrand 91025 Evry Cedex - France)"],"affiliations":[{"raw_affiliation_string":"CEA/IRCM/LEFG, 91057, Evry, France","institution_ids":["https://openalex.org/I2738703131","https://openalex.org/I4210113668"]},{"raw_affiliation_string":"Universit\u00e9 d\u2019\u00c9vry-Val d\u2019Essonne, 91037, \u00c9vry, France","institution_ids":["https://openalex.org/I88467170"]},{"raw_affiliation_string":"CEA/IRCM/LEFG (CEA/IRCM/LEFG, 91057 Evry, France - France)","institution_ids":["https://openalex.org/I2738703131"]},{"raw_affiliation_string":"UEVE - Universit\u00e9 d'\u00c9vry-Val-d'Essonne (Boulevard Fran\u00e7ois Mitterrand 91025 Evry Cedex - France)","institution_ids":["https://openalex.org/I88467170"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5066766964","display_name":"Florence d\u2019Alch\u00e9\u2013Buc","orcid":"https://orcid.org/0000-0002-8353-0589"},"institutions":[{"id":"https://openalex.org/I4210144804","display_name":"Laboratoire de Recherche en Informatique","ror":"https://ror.org/04e3ktk27","country_code":"FR","type":"facility","lineage":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I1326498283","https://openalex.org/I4210144804","https://openalex.org/I4210159245"]},{"id":"https://openalex.org/I102197404","display_name":"Universit\u00e9 Paris-Sud","ror":"https://ror.org/028rypz17","country_code":"FR","type":"education","lineage":["https://openalex.org/I102197404"]},{"id":"https://openalex.org/I4210107733","display_name":"Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes","ror":"https://ror.org/01aqxgr98","country_code":"FR","type":"facility","lineage":["https://openalex.org/I277688954","https://openalex.org/I277688954","https://openalex.org/I4210107733","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I88467170","display_name":"Universit\u00e9 d'\u00c9vry Val-d'Essonne","ror":"https://ror.org/00e96v939","country_code":"FR","type":"education","lineage":["https://openalex.org/I277688954","https://openalex.org/I88467170"]},{"id":"https://openalex.org/I1294671590","display_name":"Centre National de la Recherche Scientifique","ror":"https://ror.org/02feahw73","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1294671590"]},{"id":"https://openalex.org/I142476485","display_name":"\u00c9cole Polytechnique","ror":"https://ror.org/05hy3tk52","country_code":"FR","type":"education","lineage":["https://openalex.org/I142476485","https://openalex.org/I4210145102"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Florence d\u2019Alch\u00e9-Buc","raw_affiliation_strings":["IBISC EA 4526, Universit\u00e9 d\u2019\u00c9vry-Val d\u2019Essonne, 23 Boulevard de France, 91037, \u00c9vry, France","INRIA-Saclay, AMIB, LRI umr CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France","IBISC - Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes (40 rue du Pelvoux, Courcouronnes ; 91020 Evry Cedex - France)","AMIB  - Algorithms and Models for Integrative Biology (Algorithmes et mod\u00e8les pour la Biologie Int\u00e9grative\r\nB\u00e2timent Alan Turing - Campus de l'\u00c9cole Polytechnique - 1 rue Honor\u00e9 d'Estienne d'Orves - 91120 Palaiseau - France)"],"affiliations":[{"raw_affiliation_string":"IBISC EA 4526, Universit\u00e9 d\u2019\u00c9vry-Val d\u2019Essonne, 23 Boulevard de France, 91037, \u00c9vry, France","institution_ids":["https://openalex.org/I88467170"]},{"raw_affiliation_string":"INRIA-Saclay, AMIB, LRI umr CNRS 8623, Universit\u00e9 Paris Sud, Orsay, France","institution_ids":["https://openalex.org/I102197404","https://openalex.org/I1294671590","https://openalex.org/I4210144804"]},{"raw_affiliation_string":"IBISC - Informatique, Biologie Int\u00e9grative et Syst\u00e8mes Complexes (40 rue du Pelvoux, Courcouronnes ; 91020 Evry Cedex - France)","institution_ids":["https://openalex.org/I4210107733"]},{"raw_affiliation_string":"AMIB  - Algorithms and Models for Integrative Biology (Algorithmes et mod\u00e8les pour la Biologie Int\u00e9grative\r\nB\u00e2timent Alan Turing - Campus de l'\u00c9cole Polytechnique - 1 rue Honor\u00e9 d'Estienne d'Orves - 91120 Palaiseau - France)","institution_ids":["https://openalex.org/I142476485"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5008589136"],"corresponding_institution_ids":["https://openalex.org/I4210107733"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.7486,"has_fulltext":true,"cited_by_count":14,"citation_normalized_percentile":{"value":0.70825672,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"14","issue":"1","first_page":"273","last_page":"273"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10621","display_name":"Gene Regulatory Network Analysis","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10885","display_name":"Gene expression and cancer classification","score":0.9976999759674072,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.996999979019165,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.7027498483657837},{"id":"https://openalex.org/keywords/pairwise-comparison","display_name":"Pairwise comparison","score":0.66913241147995},{"id":"https://openalex.org/keywords/gene-regulatory-network","display_name":"Gene regulatory network","score":0.6571300625801086},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6509566903114319},{"id":"https://openalex.org/keywords/bayesian-network","display_name":"Bayesian network","score":0.6172740459442139},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.6140285730361938},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.6070472598075867},{"id":"https://openalex.org/keywords/markov-blanket","display_name":"Markov blanket","score":0.5752557516098022},{"id":"https://openalex.org/keywords/graphical-model","display_name":"Graphical model","score":0.5129120349884033},{"id":"https://openalex.org/keywords/classifier","display_name":"Classifier (UML)","score":0.506506085395813},{"id":"https://openalex.org/keywords/markov-chain","display_name":"Markov chain","score":0.504590630531311},{"id":"https://openalex.org/keywords/probabilistic-logic","display_name":"Probabilistic logic","score":0.4434118866920471},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.36371949315071106},{"id":"https://openalex.org/keywords/markov-model","display_name":"Markov model","score":0.35895127058029175},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1733909547328949},{"id":"https://openalex.org/keywords/variable-order-markov-model","display_name":"Variable-order Markov model","score":0.1592504382133484},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.13324856758117676},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.09281092882156372}],"concepts":[{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.7027498483657837},{"id":"https://openalex.org/C184898388","wikidata":"https://www.wikidata.org/wiki/Q1435712","display_name":"Pairwise comparison","level":2,"score":0.66913241147995},{"id":"https://openalex.org/C67339327","wikidata":"https://www.wikidata.org/wiki/Q1502576","display_name":"Gene regulatory network","level":4,"score":0.6571300625801086},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6509566903114319},{"id":"https://openalex.org/C33724603","wikidata":"https://www.wikidata.org/wiki/Q812540","display_name":"Bayesian network","level":2,"score":0.6172740459442139},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.6140285730361938},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.6070472598075867},{"id":"https://openalex.org/C123867240","wikidata":"https://www.wikidata.org/wiki/Q3001792","display_name":"Markov blanket","level":5,"score":0.5752557516098022},{"id":"https://openalex.org/C155846161","wikidata":"https://www.wikidata.org/wiki/Q1143367","display_name":"Graphical model","level":2,"score":0.5129120349884033},{"id":"https://openalex.org/C95623464","wikidata":"https://www.wikidata.org/wiki/Q1096149","display_name":"Classifier (UML)","level":2,"score":0.506506085395813},{"id":"https://openalex.org/C98763669","wikidata":"https://www.wikidata.org/wiki/Q176645","display_name":"Markov chain","level":2,"score":0.504590630531311},{"id":"https://openalex.org/C49937458","wikidata":"https://www.wikidata.org/wiki/Q2599292","display_name":"Probabilistic logic","level":2,"score":0.4434118866920471},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.36371949315071106},{"id":"https://openalex.org/C163836022","wikidata":"https://www.wikidata.org/wiki/Q6771326","display_name":"Markov model","level":3,"score":0.35895127058029175},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1733909547328949},{"id":"https://openalex.org/C54907487","wikidata":"https://www.wikidata.org/wiki/Q7915688","display_name":"Variable-order Markov model","level":4,"score":0.1592504382133484},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.13324856758117676},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.09281092882156372},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0}],"mesh":[{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008128","descriptor_name":"Logic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012372","descriptor_name":"ROC Curve","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030541","descriptor_name":"Databases, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D049490","descriptor_name":"Systems Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D053263","descriptor_name":"Gene Regulatory Networks","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":8,"locations":[{"id":"doi:10.1186/1471-2105-14-273","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-273","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-273","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24028533","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24028533","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.370.6980","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.370.6980","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://eprints.pascal-network.org/archive/00010233/01/eprint-mln.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.382.4003","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.382.4003","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal.inria.fr/docs/00/78/10/35/PDF/mln_bioinfo_vf.pdf","raw_type":"text"},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.400.3533","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.400.3533","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"http://hal.archives-ouvertes.fr/docs/00/86/87/67/PDF/1471-2105-14-273.pdf","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00868767v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00868767","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://bmcbioinformatics.biomedcentral.com/","raw_type":"Journal articles"},{"id":"pmh:oai:europepmc.org:2839623","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3849013","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3849013","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3849013","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-273","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-273","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-273","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4699999988079071,"id":"https://metadata.un.org/sdg/16","display_name":"Peace, Justice and strong institutions"}],"awards":[{"id":"https://openalex.org/G766923599","display_name":null,"funder_award_id":"ANR-05","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1988917080.pdf","grobid_xml":"https://content.openalex.org/works/W1988917080.grobid-xml"},"referenced_works_count":63,"referenced_works":["https://openalex.org/W47392883","https://openalex.org/W85350352","https://openalex.org/W141326033","https://openalex.org/W1488935569","https://openalex.org/W1514787161","https://openalex.org/W1535439311","https://openalex.org/W1585529040","https://openalex.org/W1588527235","https://openalex.org/W1598309196","https://openalex.org/W1635218549","https://openalex.org/W1866372755","https://openalex.org/W1976526581","https://openalex.org/W1977970897","https://openalex.org/W1983965569","https://openalex.org/W1987902506","https://openalex.org/W1990512452","https://openalex.org/W2006617902","https://openalex.org/W2011347035","https://openalex.org/W2013502943","https://openalex.org/W2030811942","https://openalex.org/W2033072307","https://openalex.org/W2044525257","https://openalex.org/W2046673993","https://openalex.org/W2050871273","https://openalex.org/W2051434435","https://openalex.org/W2053707267","https://openalex.org/W2076372398","https://openalex.org/W2076513103","https://openalex.org/W2091125641","https://openalex.org/W2099380913","https://openalex.org/W2099862356","https://openalex.org/W2101029276","https://openalex.org/W2103017472","https://openalex.org/W2103033231","https://openalex.org/W2107580398","https://openalex.org/W2108421561","https://openalex.org/W2109743529","https://openalex.org/W2110065044","https://openalex.org/W2116504907","https://openalex.org/W2122342005","https://openalex.org/W2123958887","https://openalex.org/W2127788692","https://openalex.org/W2128817214","https://openalex.org/W2136801552","https://openalex.org/W2137027418","https://openalex.org/W2138516811","https://openalex.org/W2138973161","https://openalex.org/W2140141795","https://openalex.org/W2148944713","https://openalex.org/W2149714235","https://openalex.org/W2150452800","https://openalex.org/W2159944419","https://openalex.org/W2160095931","https://openalex.org/W2162061564","https://openalex.org/W2163296115","https://openalex.org/W2169992051","https://openalex.org/W2328176404","https://openalex.org/W2487770199","https://openalex.org/W2540540486","https://openalex.org/W2611370172","https://openalex.org/W2917375902","https://openalex.org/W3099289621","https://openalex.org/W4293249558"],"related_works":["https://openalex.org/W2761923836","https://openalex.org/W2766005066","https://openalex.org/W4300818674","https://openalex.org/W2788721134","https://openalex.org/W3207148653","https://openalex.org/W3183113072","https://openalex.org/W2126934800","https://openalex.org/W2187019487","https://openalex.org/W1715419791","https://openalex.org/W643788828"],"abstract_inverted_index":{"The":[0],"numerical":[1],"studies":[2],"show":[3],"that":[4],"MLN":[5],"achieves":[6],"very":[7],"good":[8],"predictive":[9],"performance":[10],"while":[11],"opening":[12],"the":[13,19,22],"door":[14],"to":[15,24,32],"some":[16],"interpretability":[17],"of":[18],"decisions.":[20],"Besides":[21],"ability":[23],"suggest":[25],"new":[26],"regulations,":[27],"such":[28],"an":[29],"approach":[30],"allows":[31],"cross-validate":[33],"experimental":[34],"data":[35],"with":[36],"existing":[37],"knowledge.":[38]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}