{"id":"https://openalex.org/W1964538518","doi":"https://doi.org/10.1186/1471-2105-14-265","title":"Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila","display_name":"Two Pfam protein families characterized by a crystal structure of protein lpg2210 from Legionella pneumophila","publication_year":2013,"publication_date":"2013-09-03","ids":{"openalex":"https://openalex.org/W1964538518","doi":"https://doi.org/10.1186/1471-2105-14-265","mag":"1964538518","pmid":"https://pubmed.ncbi.nlm.nih.gov/24004689"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-265","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-265","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-265","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-265","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5064117037","display_name":"Penelope Coggill","orcid":null},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Penelope Coggill","raw_affiliation_strings":["Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK. pcc@sanger.ac.uk","European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK","Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire CB10 1SA, UK. pcc@sanger.ac.uk","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5040135675","display_name":"Ruth Y. Eberhardt","orcid":"https://orcid.org/0000-0001-6152-1369"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I2802476451","display_name":"Wellcome Sanger Institute","ror":"https://ror.org/05cy4wa09","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I2802476451","https://openalex.org/I87048295"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ruth Y Eberhardt","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK","Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK","European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK","Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SA, UK","institution_ids":["https://openalex.org/I2802476451"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I2802476451"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5104045098","display_name":"ROBERT FINN","orcid":"https://orcid.org/0000-0001-8626-2148"},"institutions":[{"id":"https://openalex.org/I1344073410","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410"]},{"id":"https://openalex.org/I195573530","display_name":"Janelia Research Campus","ror":"https://ror.org/013sk6x84","country_code":"US","type":"facility","lineage":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]},{"id":"https://openalex.org/I4210163239","display_name":"Helix (United States)","ror":"https://ror.org/056jgxp12","country_code":"US","type":"company","lineage":["https://openalex.org/I4210163239"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Robert D Finn","raw_affiliation_strings":["Howard Hughes Medical Institute, Janelia Farm Research Campus, 19700 Helix Drive, Ashburn, VA, 20147, USA","Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Howard Hughes Medical Institute, Janelia Farm Research Campus, 19700 Helix Drive, Ashburn, VA, 20147, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I195573530","https://openalex.org/I4210163239"]},{"raw_affiliation_string":"Howard Hughes Medical Institute, Janelia Farm Research Campus, Ashburn, USA","institution_ids":["https://openalex.org/I1344073410","https://openalex.org/I195573530"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5030348326","display_name":"Yuanyuan Chang","orcid":"https://orcid.org/0000-0001-8562-3781"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Yuanyuan Chang","raw_affiliation_strings":["Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA, 92037, USA","Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, USA","Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA, 92037, USA","institution_ids":["https://openalex.org/I188891513"]},{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5066090493","display_name":"Lukasz Jaroszewski","orcid":null},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Lukasz Jaroszewski","raw_affiliation_strings":["Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA, 92037, USA","Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, USA","Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA, 92037, USA","institution_ids":["https://openalex.org/I188891513"]},{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010671148","display_name":"Adam Godzik","orcid":"https://orcid.org/0000-0002-2425-852X"},"institutions":[{"id":"https://openalex.org/I188891513","display_name":"Sanford Burnham Prebys Medical Discovery Institute","ror":"https://ror.org/03m1g2s55","country_code":"US","type":"nonprofit","lineage":["https://openalex.org/I188891513"]},{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Adam Godzik","raw_affiliation_strings":["Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA, 92037, USA","Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, USA","Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, CA, 92037, USA","institution_ids":["https://openalex.org/I188891513"]},{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Program on Bioinformatics and Systems Biology, Sanford-Burnham Medical Research Institute, La Jolla, USA","institution_ids":["https://openalex.org/I188891513"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5103261223","display_name":"Debanu Das","orcid":null},"institutions":[{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I4210120900","display_name":"Stanford Synchrotron Radiation Lightsource","ror":"https://ror.org/02vzbm991","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I4210120900","https://openalex.org/I97018004","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Debanu Das","raw_affiliation_strings":["Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210120900"]},{"raw_affiliation_string":"Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210120900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100854728","display_name":"Qingping Xu","orcid":null},"institutions":[{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I4210120900","display_name":"Stanford Synchrotron Radiation Lightsource","ror":"https://ror.org/02vzbm991","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I4210120900","https://openalex.org/I97018004","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Qingping Xu","raw_affiliation_strings":["Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210120900"]},{"raw_affiliation_string":"Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210120900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5035358093","display_name":"Herbert L. Axelrod","orcid":null},"institutions":[{"id":"https://openalex.org/I2801935854","display_name":"SLAC National Accelerator Laboratory","ror":"https://ror.org/05gzmn429","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I97018004"]},{"id":"https://openalex.org/I4210091204","display_name":"Joint Center for Structural Genomics","ror":"https://ror.org/00exr1241","country_code":"US","type":"other","lineage":["https://openalex.org/I4210091204"]},{"id":"https://openalex.org/I4210120900","display_name":"Stanford Synchrotron Radiation Lightsource","ror":"https://ror.org/02vzbm991","country_code":"US","type":"facility","lineage":["https://openalex.org/I1330989302","https://openalex.org/I2801935854","https://openalex.org/I39565521","https://openalex.org/I4210120900","https://openalex.org/I97018004","https://openalex.org/I97018004"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Herbert L Axelrod","raw_affiliation_strings":["Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Joint Center for Structural Genomics, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210091204"]},{"raw_affiliation_string":"Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, CA, 94025, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210120900"]},{"raw_affiliation_string":"Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Menlo Park, USA","institution_ids":["https://openalex.org/I2801935854","https://openalex.org/I4210120900"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5026932356","display_name":"L. Aravind","orcid":"https://orcid.org/0000-0003-0771-253X"},"institutions":[{"id":"https://openalex.org/I1299303238","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88","country_code":"US","type":"government","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238"]},{"id":"https://openalex.org/I4210109390","display_name":"National Center for Biotechnology Information","ror":"https://ror.org/02meqm098","country_code":"US","type":"facility","lineage":["https://openalex.org/I1299022934","https://openalex.org/I1299303238","https://openalex.org/I2800548410","https://openalex.org/I4210109390"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"L Aravind","raw_affiliation_strings":["National Center for Biotechnology Information, National Library of Medicine, Building 38A, Bethesda, MD, 20894, USA","National Center for Biotechnology Information, National Library of Medicine, Bethesda, USA#TAB#"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Building 38A, Bethesda, MD, 20894, USA","institution_ids":["https://openalex.org/I4210109390"]},{"raw_affiliation_string":"National Center for Biotechnology Information, National Library of Medicine, Bethesda, USA#TAB#","institution_ids":["https://openalex.org/I1299303238"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025834882","display_name":"Alexey G. Murzin","orcid":null},"institutions":[{"id":"https://openalex.org/I170203145","display_name":"MRC Laboratory of Molecular Biology","ror":"https://ror.org/00tw3jy02","country_code":"GB","type":"facility","lineage":["https://openalex.org/I170203145","https://openalex.org/I4210087105","https://openalex.org/I90344618"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alexey G Murzin","raw_affiliation_strings":["MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH, UK","MRC Laboratory of Molecular Biology Francis Crick Avenue, Cambridge Biomedical Campus Cambridge UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"MRC Laboratory of Molecular Biology, Francis Crick Avenue, Cambridge Biomedical Campus, Cambridge, CB2 0QH, UK","institution_ids":["https://openalex.org/I170203145"]},{"raw_affiliation_string":"MRC Laboratory of Molecular Biology Francis Crick Avenue, Cambridge Biomedical Campus Cambridge UK","institution_ids":["https://openalex.org/I170203145"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5059430118","display_name":"Alex Bateman","orcid":"https://orcid.org/0000-0002-6982-4660"},"institutions":[{"id":"https://openalex.org/I1303153112","display_name":"European Bioinformatics Institute","ror":"https://ror.org/02catss52","country_code":"GB","type":"facility","lineage":["https://openalex.org/I1303153112","https://openalex.org/I4210138560"]},{"id":"https://openalex.org/I87048295","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08","country_code":"GB","type":"nonprofit","lineage":["https://openalex.org/I87048295"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Alex Bateman","raw_affiliation_strings":["European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK","European Molecular Biology Laboratory, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Trust Genome Campus, Hinxton, Cambridgeshire, CB10 1SD, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]},{"raw_affiliation_string":"European Molecular Biology Laboratory, European Bioinformatics Institute Wellcome Trust Genome Campus, Hinxton, UK","institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I87048295"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":13,"corresponding_author_ids":["https://openalex.org/A5064117037"],"corresponding_institution_ids":["https://openalex.org/I1303153112","https://openalex.org/I2802476451","https://openalex.org/I87048295"],"apc_list":{"value":2990,"currency":"USD","value_usd":2990},"apc_paid":{"value":2990,"currency":"USD","value_usd":2990},"fwci":0.1451,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.50916667,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"14","issue":"1","first_page":"265","last_page":"265"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},"topics":[{"id":"https://openalex.org/T12505","display_name":"Peptidase Inhibition and Analysis","score":0.98580002784729,"subfield":{"id":"https://openalex.org/subfields/2730","display_name":"Oncology"},"field":{"id":"https://openalex.org/fields/27","display_name":"Medicine"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10257","display_name":"Oral microbiology and periodontitis research","score":0.9707000255584717,"subfield":{"id":"https://openalex.org/subfields/3506","display_name":"Periodontics"},"field":{"id":"https://openalex.org/fields/35","display_name":"Dentistry"},"domain":{"id":"https://openalex.org/domains/4","display_name":"Health Sciences"}},{"id":"https://openalex.org/T10602","display_name":"Glycosylation and Glycoproteins Research","score":0.9664000272750854,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/protein-domain","display_name":"Protein domain","score":0.5943616032600403},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5720348954200745},{"id":"https://openalex.org/keywords/structural-genomics","display_name":"Structural genomics","score":0.5446736812591553},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.5313438177108765},{"id":"https://openalex.org/keywords/legionella-pneumophila","display_name":"Legionella pneumophila","score":0.5170241594314575},{"id":"https://openalex.org/keywords/protein-family","display_name":"Protein family","score":0.49753859639167786},{"id":"https://openalex.org/keywords/sequence-alignment","display_name":"Sequence alignment","score":0.4744599759578705},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4492732286453247},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.41741758584976196},{"id":"https://openalex.org/keywords/structural-similarity","display_name":"Structural similarity","score":0.4168659746646881},{"id":"https://openalex.org/keywords/peptide-sequence","display_name":"Peptide sequence","score":0.4015038013458252},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.3354739546775818},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.2748456597328186},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1618523895740509},{"id":"https://openalex.org/keywords/bacteria","display_name":"Bacteria","score":0.09923246502876282}],"concepts":[{"id":"https://openalex.org/C144292202","wikidata":"https://www.wikidata.org/wiki/Q898273","display_name":"Protein domain","level":3,"score":0.5943616032600403},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5720348954200745},{"id":"https://openalex.org/C192772702","wikidata":"https://www.wikidata.org/wiki/Q2583975","display_name":"Structural genomics","level":3,"score":0.5446736812591553},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.5313438177108765},{"id":"https://openalex.org/C2776118409","wikidata":"https://www.wikidata.org/wiki/Q147885","display_name":"Legionella pneumophila","level":3,"score":0.5170241594314575},{"id":"https://openalex.org/C171897839","wikidata":"https://www.wikidata.org/wiki/Q417841","display_name":"Protein family","level":3,"score":0.49753859639167786},{"id":"https://openalex.org/C45484198","wikidata":"https://www.wikidata.org/wiki/Q827246","display_name":"Sequence alignment","level":4,"score":0.4744599759578705},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4492732286453247},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.41741758584976196},{"id":"https://openalex.org/C139489369","wikidata":"https://www.wikidata.org/wiki/Q770846","display_name":"Structural similarity","level":2,"score":0.4168659746646881},{"id":"https://openalex.org/C167625842","wikidata":"https://www.wikidata.org/wiki/Q899763","display_name":"Peptide sequence","level":3,"score":0.4015038013458252},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.3354739546775818},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.2748456597328186},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1618523895740509},{"id":"https://openalex.org/C523546767","wikidata":"https://www.wikidata.org/wiki/Q10876","display_name":"Bacteria","level":2,"score":0.09923246502876282}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D001426","descriptor_name":"Bacterial Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008969","descriptor_name":"Molecular Sequence Data","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016952","descriptor_name":"Legionella pneumophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016952","descriptor_name":"Legionella pneumophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016952","descriptor_name":"Legionella pneumophila","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D016952","descriptor_name":"Legionella pneumophila","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016952","descriptor_name":"Legionella pneumophila","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016952","descriptor_name":"Legionella pneumophila","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020539","descriptor_name":"Sequence Analysis, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-265","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-265","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-265","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:24004689","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/24004689","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":"Journal Article"},{"id":"pmh:oai:europepmc.org:2835617","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3848476","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3848476","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3848476","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:escholarship.org:ark:/13030/qt2xp5x8sp","is_oa":true,"landing_page_url":"https://escholarship.org/uc/item/2xp5x8sp","pdf_url":null,"source":{"id":"https://openalex.org/S4306400115","display_name":"eScholarship (California Digital Library)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I2801248553","host_organization_name":"California Digital Library","host_organization_lineage":["https://openalex.org/I2801248553"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, vol 14, iss 1","raw_type":"article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-265","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-265","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-265","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land","score":0.5600000023841858}],"awards":[{"id":"https://openalex.org/G1984473900","display_name":null,"funder_award_id":"U54GM094586","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2300450775","display_name":null,"funder_award_id":"P41-GM-103393","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G2856703182","display_name":null,"funder_award_id":"R01GM101457","funder_id":"https://openalex.org/F4320337354","funder_display_name":"National Institute of General Medical Sciences"},{"id":"https://openalex.org/G4065608058","display_name":null,"funder_award_id":"WT077044/Z/05/Z","funder_id":"https://openalex.org/F4320311904","funder_display_name":"Wellcome Trust"}],"funders":[{"id":"https://openalex.org/F4320306082","display_name":"Howard Hughes Medical Institute","ror":"https://ror.org/006w34k90"},{"id":"https://openalex.org/F4320311904","display_name":"Wellcome Trust","ror":"https://ror.org/029chgv08"},{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"},{"id":"https://openalex.org/F4320337354","display_name":"National Institute of General Medical Sciences","ror":"https://ror.org/04q48ey07"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W1964538518.pdf","grobid_xml":"https://content.openalex.org/works/W1964538518.grobid-xml"},"referenced_works_count":17,"referenced_works":["https://openalex.org/W1557105818","https://openalex.org/W1858848970","https://openalex.org/W2013272124","https://openalex.org/W2030517878","https://openalex.org/W2030786927","https://openalex.org/W2084251919","https://openalex.org/W2095387858","https://openalex.org/W2095566926","https://openalex.org/W2097642323","https://openalex.org/W2105924489","https://openalex.org/W2141885858","https://openalex.org/W2161062388","https://openalex.org/W2165335121","https://openalex.org/W2299348568","https://openalex.org/W4211000692","https://openalex.org/W4285719527","https://openalex.org/W4320301318"],"related_works":["https://openalex.org/W4389022011","https://openalex.org/W2014011595","https://openalex.org/W2118652015","https://openalex.org/W1986155816","https://openalex.org/W1967097205","https://openalex.org/W2045751102","https://openalex.org/W1854805360","https://openalex.org/W2089999388","https://openalex.org/W2036845870","https://openalex.org/W2146732641"],"abstract_inverted_index":{"BACKGROUND:":[0],"Every":[1],"genome":[2],"contains":[3],"a":[4,44,96,165,181,185,193],"large":[5],"number":[6],"of":[7,18,58,82,107,136],"uncharacterized":[8,20,46],"proteins":[9,21],"that":[10,100,159,175],"may":[11,163,179],"encode":[12],"entirely":[13],"novel":[14,39],"biological":[15],"systems.":[16],"Many":[17],"these":[19],"fall":[22],"into":[23,38],"related":[24],"sequence":[25,29],"families.":[26],"By":[27],"applying":[28],"and":[30,133,139,150],"structural":[31,68],"analysis":[32,122],"we":[33,157],"hope":[34],"to":[35,71,103,125],"provide":[36],"insight":[37],"biology.":[40],"RESULTS:":[41],"We":[42,173],"analyze":[43],"previously":[45],"Pfam":[47,84,92],"protein":[48,60,75],"family":[49,85,93],"called":[50,86],"DUF4424":[51,94,131,161],"[Pfam:PF14415].":[52],"The":[53,91,111],"recently":[54],"solved":[55],"three-dimensional":[56],"structure":[57,81],"the":[59,66,78,87,104,119,130,160,176],"lpg2210":[61],"from":[62],"Legionella":[63],"pneumophila":[64],"provides":[65],"first":[67,79],"information":[69],"pertaining":[70],"this":[72],"family.":[73],"This":[74],"additionally":[76],"includes":[77],"representative":[80],"another":[83],"YARHG":[88,112],"domain":[89,106,113,117,132,162,178],"[Pfam:PF13308].":[90],"adopts":[95],"19-stranded":[97],"beta-sandwich":[98],"fold":[99],"shows":[101],"similarity":[102],"N-terminal":[105],"leukotriene":[108],"A-4":[109],"hydrolase.":[110],"forms":[114],"an":[115],"all-helical":[116],"at":[118],"C-terminus.":[120],"Structure":[121],"allows":[123],"us":[124],"recognize":[126],"distant":[127],"similarities":[128],"between":[129],"individual":[134],"domains":[135],"M1":[137],"aminopeptidases":[138],"tricorn":[140],"proteases,":[141],"which":[142],"form":[143],"massive":[144],"proteasome-like":[145],"capsids":[146],"in":[147,167,183,187],"both":[148],"archaea":[149],"bacteria.":[151],"CONCLUSIONS:":[152],"Based":[153],"on":[154],"our":[155],"analyses":[156],"hypothesize":[158],"have":[164],"role":[166,182],"forming":[168],"large,":[169],"multi-component":[170],"enzyme":[171],"complexes.":[172],"suggest":[174],"YARGH":[177],"play":[180],"binding":[184],"moiety":[186],"proximity":[188],"with":[189],"peptidoglycan,":[190],"such":[191],"as":[192],"hydrophobic":[194],"outer":[195],"membrane":[196],"lipid":[197],"or":[198],"lipopolysaccharide.":[199]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1}],"updated_date":"2026-08-26T07:47:46.906454","created_date":"2016-06-24T00:00:00"}
