{"id":"https://openalex.org/W2075184904","doi":"https://doi.org/10.1186/1471-2105-14-247","title":"PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites","display_name":"PKIS: computational identification of protein kinases for experimentally discovered protein phosphorylation sites","publication_year":2013,"publication_date":"2013-08-13","ids":{"openalex":"https://openalex.org/W2075184904","doi":"https://doi.org/10.1186/1471-2105-14-247","mag":"2075184904","pmid":"https://pubmed.ncbi.nlm.nih.gov/23941207"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-247","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-247","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-247","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-247","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5006184120","display_name":"Liang Zou","orcid":"https://orcid.org/0000-0001-7322-5735"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Liang Zou","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei 230027, China. mhwang@ustc.edu.cn","Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei 230027, China. mhwang@ustc.edu.cn","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5102813228","display_name":"Mang Wang","orcid":"https://orcid.org/0000-0001-7313-2977"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Mang Wang","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045434740","display_name":"Yi Shen","orcid":"https://orcid.org/0000-0002-1679-9238"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Mang Wang","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5018860020","display_name":"Jie Liao","orcid":"https://orcid.org/0000-0002-6697-8998"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Yi Shen","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China,Hefei,China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359729","display_name":"Ao Li","orcid":"https://orcid.org/0000-0001-9910-8967"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Jie Liao","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100376897","display_name":"Minghui Wang","orcid":"https://orcid.org/0000-0002-0181-8467"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ao Li","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100376897","display_name":"Minghui Wang","orcid":"https://orcid.org/0000-0002-0181-8467"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"Minghui Wang","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5100376897","display_name":"Minghui Wang","orcid":"https://orcid.org/0000-0002-0181-8467"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Minghui Wang","raw_affiliation_strings":["Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Electronic Science and Technology, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]},{"raw_affiliation_string":"Research Centres for Biomedical Engineering, University of Science and Technology of China, Hefei, 230027, China","institution_ids":["https://openalex.org/I126520041"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":1,"corresponding_author_ids":["https://openalex.org/A5045434740","https://openalex.org/A5100376897"],"corresponding_institution_ids":["https://openalex.org/I126520041"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":2.3598,"has_fulltext":true,"cited_by_count":45,"citation_normalized_percentile":{"value":0.88752784,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"1","first_page":"247","last_page":"247"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6868000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.6868000030517578,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.1096000000834465,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10519","display_name":"Advanced Proteomics Techniques and Applications","score":0.10660000145435333,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phosphorylation","display_name":"Phosphorylation","score":0.6397022008895874},{"id":"https://openalex.org/keywords/identification","display_name":"Identification (biology)","score":0.6369121074676514},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6160187721252441},{"id":"https://openalex.org/keywords/kinase","display_name":"Kinase","score":0.6139044761657715},{"id":"https://openalex.org/keywords/protein-phosphorylation","display_name":"Protein phosphorylation","score":0.5658334493637085},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4680207669734955},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.40785959362983704},{"id":"https://openalex.org/keywords/cell-biology","display_name":"Cell biology","score":0.3991081714630127},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.37454313039779663},{"id":"https://openalex.org/keywords/protein-kinase-a","display_name":"Protein kinase A","score":0.35654860734939575},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32764434814453125},{"id":"https://openalex.org/keywords/biochemistry","display_name":"Biochemistry","score":0.20935505628585815},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.11850109696388245},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.07776263356208801}],"concepts":[{"id":"https://openalex.org/C11960822","wikidata":"https://www.wikidata.org/wiki/Q242736","display_name":"Phosphorylation","level":2,"score":0.6397022008895874},{"id":"https://openalex.org/C116834253","wikidata":"https://www.wikidata.org/wiki/Q2039217","display_name":"Identification (biology)","level":2,"score":0.6369121074676514},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6160187721252441},{"id":"https://openalex.org/C184235292","wikidata":"https://www.wikidata.org/wiki/Q421851","display_name":"Kinase","level":2,"score":0.6139044761657715},{"id":"https://openalex.org/C87325107","wikidata":"https://www.wikidata.org/wiki/Q7251493","display_name":"Protein phosphorylation","level":4,"score":0.5658334493637085},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4680207669734955},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.40785959362983704},{"id":"https://openalex.org/C95444343","wikidata":"https://www.wikidata.org/wiki/Q7141","display_name":"Cell biology","level":1,"score":0.3991081714630127},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.37454313039779663},{"id":"https://openalex.org/C97029542","wikidata":"https://www.wikidata.org/wiki/Q281417","display_name":"Protein kinase A","level":3,"score":0.35654860734939575},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32764434814453125},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.20935505628585815},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.11850109696388245},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.07776263356208801},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000072377","descriptor_name":"Syk Kinase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072377","descriptor_name":"Syk Kinase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000072377","descriptor_name":"Syk Kinase","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010766","descriptor_name":"Phosphorylation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011505","descriptor_name":"Protein-Tyrosine Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011505","descriptor_name":"Protein-Tyrosine Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011505","descriptor_name":"Protein-Tyrosine Kinases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D013379","descriptor_name":"Substrate Specificity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015398","descriptor_name":"Signal Transduction","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016203","descriptor_name":"CDC2 Protein Kinase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016203","descriptor_name":"CDC2 Protein Kinase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D016203","descriptor_name":"CDC2 Protein Kinase","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000295","qualifier_name":"instrumentation","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019859","descriptor_name":"Proto-Oncogene Proteins c-met","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019859","descriptor_name":"Proto-Oncogene Proteins c-met","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D019859","descriptor_name":"Proto-Oncogene Proteins c-met","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047390","descriptor_name":"Casein Kinase II","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047390","descriptor_name":"Casein Kinase II","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047390","descriptor_name":"Casein Kinase II","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047908","descriptor_name":"Intracellular Signaling Peptides and Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047908","descriptor_name":"Intracellular Signaling Peptides and Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D047908","descriptor_name":"Intracellular Signaling Peptides and Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-14-247","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-247","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-247","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23941207","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23941207","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2761061","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3765618","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3765618","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3765618","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-247","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-247","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-247","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2957323829","display_name":"\u80bf\u7624\u62f7\u8d1d\u6570\u5f02\u5e38\u68c0\u6d4b\u7684\u751f\u7269\u4fe1\u606f\u5b66\u7b97\u6cd5\u7814\u7a76","funder_award_id":"31100955","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5601211385","display_name":null,"funder_award_id":"WK2100230011","funder_id":"https://openalex.org/F4320335787","funder_display_name":"Fundamental Research Funds for the Central Universities"},{"id":"https://openalex.org/G7888023472","display_name":"\u6fc0\u9176\u7279\u5f02\u6027\u7684\u86cb\u767d\u8d28\u78f7\u9178\u5316\u9884\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61101061","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"},{"id":"https://openalex.org/F4320335787","display_name":"Fundamental Research Funds for the Central Universities","ror":null},{"id":"https://openalex.org/F4320336024","display_name":"Specialized Research Fund for the Doctoral Program of Higher Education of China","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2075184904.pdf","grobid_xml":"https://content.openalex.org/works/W2075184904.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W50100400","https://openalex.org/W585966058","https://openalex.org/W951033839","https://openalex.org/W1570204439","https://openalex.org/W1759390037","https://openalex.org/W1964767880","https://openalex.org/W1967406643","https://openalex.org/W1970753581","https://openalex.org/W1999450178","https://openalex.org/W2010061651","https://openalex.org/W2011876370","https://openalex.org/W2026886450","https://openalex.org/W2027980594","https://openalex.org/W2030205108","https://openalex.org/W2065549925","https://openalex.org/W2095141804","https://openalex.org/W2097573043","https://openalex.org/W2099686283","https://openalex.org/W2103404876","https://openalex.org/W2105597591","https://openalex.org/W2115867280","https://openalex.org/W2122683221","https://openalex.org/W2130277691","https://openalex.org/W2132675424","https://openalex.org/W2143076230","https://openalex.org/W2147054306","https://openalex.org/W2151031196","https://openalex.org/W2153635508","https://openalex.org/W2158217645","https://openalex.org/W2162172965","https://openalex.org/W2165742826","https://openalex.org/W2165923048","https://openalex.org/W2168181266","https://openalex.org/W2171649066","https://openalex.org/W2192273339"],"related_works":["https://openalex.org/W2051108283","https://openalex.org/W2352214813","https://openalex.org/W1964515703","https://openalex.org/W2491608603","https://openalex.org/W941583161","https://openalex.org/W2505862120","https://openalex.org/W4223412920","https://openalex.org/W1973530967","https://openalex.org/W4362623556","https://openalex.org/W1557660156"],"abstract_inverted_index":{"BACKGROUND:":[0],"Dynamic":[1],"protein":[2,91,105,150,216,234],"phosphorylation":[3,26,60,70,220],"is":[4,16,45,97,224,240],"an":[5,197],"essential":[6],"regulatory":[7],"mechanism":[8],"in":[9,18,148,165],"various":[10,76],"organisms.":[11],"In":[12,156,211],"this":[13,38,82,87],"capacity,":[14],"it":[15],"involved":[17],"a":[19,89,225],"multitude":[20],"of":[21,33,42,58,103,119,189,233],"signal":[22,34,206],"transduction":[23,35],"pathways.":[24,53],"Kinase-specific":[25],"data":[27,61],"lay":[28],"the":[29,46,55,101,104,117,163,231],"foundation":[30],"for":[31,100,108,218,230],"reconstruction":[32],"networks.":[36],"For":[37],"reason,":[39],"precise":[40],"annotation":[41],"phosphorylated":[43,193],"proteins":[44],"first":[47],"step":[48],"toward":[49],"simulating":[50],"cell":[51],"signaling":[52],"However,":[54],"vast":[56],"majority":[57],"kinase-specific":[59],"remain":[62],"undiscovered":[63],"and":[64,68,125,141,202],"existing":[65],"experimental":[66,219],"methods":[67],"computational":[69],"site":[71],"(P-site)":[72],"prediction":[73,135],"tools":[74,136,147],"have":[75],"limitations":[77],"with":[78,153,179],"respect":[79],"to":[80,131],"addressing":[81],"problem.":[83],"RESULTS:":[84],"To":[85],"address":[86],"issue,":[88],"novel":[90],"kinase":[92,170],"identification":[93,102],"web":[94,238],"server,":[95],"PKIS,":[96],"here":[98],"presented":[99],"kinases":[106,151,217],"responsible":[107],"experimentally":[109],"verified":[110],"P-sites":[111,164],"at":[112,243],"high":[113],"specificity,":[114],"which":[115],"incorporates":[116],"composition":[118],"monomer":[120],"spectrum":[121],"(CMS)":[122],"encoding":[123],"strategy":[124],"support":[126],"vector":[127],"machines":[128],"(SVMs).":[129],"Compared":[130],"widely":[132],"used":[133,160],"P-site":[134],"including":[137],"KinasePhos":[138],"2.0,":[139],"Musite,":[140],"GPS2.1,":[142],"PKIS":[143,158,213,237],"largely":[144],"outperformed":[145],"these":[146],"identifying":[149],"associated":[152],"known":[154,181],"P-sites.":[155,182],"addition,":[157],"was":[159,200],"on":[161],"all":[162],"Phospho.ELM":[166],"that":[167,187],"currently":[168],"lack":[169],"information.":[171],"It":[172,223],"successfully":[173],"identified":[174],"14":[175],"potential":[176],"SYK":[177],"substrates":[178],"36":[180],"Further":[183],"literature":[184],"search":[185],"showed":[186],"5":[188],"them":[190],"were":[191,208],"indeed":[192],"by":[194],"SYK.":[195],"Finally,":[196],"enrichment":[198],"analysis":[199],"performed":[201],"6":[203],"significant":[204],"SYK-related":[205],"pathways":[207],"identified.":[209],"CONCLUSIONS:":[210],"general,":[212],"can":[214],"identify":[215],"sites":[221],"efficiently.":[222],"valuable":[226],"bioinformatics":[227],"tool":[228],"suitable":[229],"study":[232],"phosphorylation.":[235],"The":[236],"server":[239],"freely":[241],"available":[242],"http://bioinformatics.ustc.edu.cn/pkis.":[244]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":7},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":7},{"year":2016,"cited_by_count":3},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":3}],"updated_date":"2026-07-08T08:33:18.762332","created_date":"2025-10-10T00:00:00"}
