{"id":"https://openalex.org/W2080008467","doi":"https://doi.org/10.1186/1471-2105-14-228","title":"CELDA - an ontology for the comprehensive representation of cells in complex systems","display_name":"CELDA - an ontology for the comprehensive representation of cells in complex systems","publication_year":2013,"publication_date":"2013-07-17","ids":{"openalex":"https://openalex.org/W2080008467","doi":"https://doi.org/10.1186/1471-2105-14-228","mag":"2080008467","pmid":"https://pubmed.ncbi.nlm.nih.gov/23865855"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-228","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-228","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-228","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-228","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5085394780","display_name":"Stefanie Seltmann","orcid":"https://orcid.org/0000-0002-8411-3226"},"institutions":[{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Stefanie Seltmann","raw_affiliation_strings":["Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","institution_ids":["https://openalex.org/I4210127521","https://openalex.org/I7877124"]},{"raw_affiliation_string":"Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5011842230","display_name":"Harald Stachelscheid","orcid":"https://orcid.org/0000-0002-9283-4605"},"institutions":[{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Harald Stachelscheid","raw_affiliation_strings":["Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","institution_ids":["https://openalex.org/I4210127521","https://openalex.org/I7877124"]},{"raw_affiliation_string":"Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5087616755","display_name":"Alexander Damaschun","orcid":null},"institutions":[{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Alexander Damaschun","raw_affiliation_strings":["Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","institution_ids":["https://openalex.org/I4210127521","https://openalex.org/I7877124"]},{"raw_affiliation_string":"Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5044902964","display_name":"Ludger Jansen","orcid":"https://orcid.org/0000-0002-0097-6359"},"institutions":[{"id":"https://openalex.org/I4665924","display_name":"University of Rostock","ror":"https://ror.org/03zdwsf69","country_code":"DE","type":"education","lineage":["https://openalex.org/I4665924"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ludger Jansen","raw_affiliation_strings":["Institute of Philosophy, University of Rostock, Rostock, Germany","Institute of Philosophy, University of Rostock Rostock, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Philosophy, University of Rostock, Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]},{"raw_affiliation_string":"Institute of Philosophy, University of Rostock Rostock, Germany","institution_ids":["https://openalex.org/I4665924"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5038027438","display_name":"Fritz Lekschas","orcid":"https://orcid.org/0000-0001-8432-4835"},"institutions":[{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Fritz Lekschas","raw_affiliation_strings":["Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","institution_ids":["https://openalex.org/I4210127521","https://openalex.org/I7877124"]},{"raw_affiliation_string":"Charit\u00e9 Universit\u00e4tsmedizin Berlin Berlin\u2010Brandenburg Center for Regenerative Therapies (BCRT) Berlin Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055724941","display_name":"Jean\u2212Fred Fontaine","orcid":"https://orcid.org/0000-0002-1101-4091"},"institutions":[{"id":"https://openalex.org/I205582932","display_name":"Max Delbr\u00fcck Center","ror":"https://ror.org/04p5ggc03","country_code":"DE","type":"facility","lineage":["https://openalex.org/I1305996414","https://openalex.org/I205582932"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Jean-Fred Fontaine","raw_affiliation_strings":["Max Delbr\u00fcck Center for Molecular Medicine, Berlin, Germany","Max Delbruck Center for Molecular Medicine,  Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Max Delbr\u00fcck Center for Molecular Medicine, Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]},{"raw_affiliation_string":"Max Delbruck Center for Molecular Medicine,  Berlin, Germany","institution_ids":["https://openalex.org/I205582932"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5076139084","display_name":"Throng Nghia Nguyen-Dobinsky","orcid":null},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Throng Nghia Nguyen-Dobinsky","raw_affiliation_strings":["Charit\u00e9-Universit\u00e4tsmedizin Berlin, Medical Informatics and Bioinformatics, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9-Universit\u00e4tsmedizin Berlin, Medical Informatics and Bioinformatics, Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5055236937","display_name":"Ulf Leser","orcid":"https://orcid.org/0000-0003-2166-9582"},"institutions":[{"id":"https://openalex.org/I39343248","display_name":"Humboldt-Universit\u00e4t zu Berlin","ror":"https://ror.org/01hcx6992","country_code":"DE","type":"education","lineage":["https://openalex.org/I39343248"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Ulf Leser","raw_affiliation_strings":["Humboldt Universit\u00e4t zu Berlin, Wissensmanagement in der Bioinformatik, Institut f\u00fcr Informatik, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Humboldt Universit\u00e4t zu Berlin, Wissensmanagement in der Bioinformatik, Institut f\u00fcr Informatik, Berlin, Germany","institution_ids":["https://openalex.org/I39343248"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5070999479","display_name":"Armin Kurtz","orcid":"https://orcid.org/0000-0003-3301-6546"},"institutions":[{"id":"https://openalex.org/I139264467","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542","country_code":"KR","type":"education","lineage":["https://openalex.org/I139264467"]},{"id":"https://openalex.org/I4210127521","display_name":"Berlin-Brandenburger Centrum f\u00fcr Regenerative Therapien","ror":"https://ror.org/03781zn34","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210127521"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE","KR"],"is_corresponding":false,"raw_author_name":"Andreas Kurtz","raw_affiliation_strings":["Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul, Republic of Korea"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9-Universit\u00e4tsmedizin Berlin, Berlin Brandenburg Center for Regenerative Therapies (BCRT), Berlin, Germany","institution_ids":["https://openalex.org/I4210127521","https://openalex.org/I7877124"]},{"raw_affiliation_string":"College of Veterinary Medicine and Research Institute for Veterinary Science, Seoul National University, Seoul, Republic of Korea","institution_ids":["https://openalex.org/I139264467"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":9,"corresponding_author_ids":["https://openalex.org/A5085394780"],"corresponding_institution_ids":["https://openalex.org/I4210127521","https://openalex.org/I7877124"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.0469,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.7663671,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"14","issue":"1","first_page":"228","last_page":"228"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6395999789237976,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.6395999789237976,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12859","display_name":"Cell Image Analysis Techniques","score":0.15719999372959137,"subfield":{"id":"https://openalex.org/subfields/1304","display_name":"Biophysics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.01720000058412552,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/ontology","display_name":"Ontology","score":0.7769020795822144},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.6089690327644348},{"id":"https://openalex.org/keywords/information-retrieval","display_name":"Information retrieval","score":0.40825143456459045},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.36222970485687256},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.327202707529068},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.25999295711517334}],"concepts":[{"id":"https://openalex.org/C25810664","wikidata":"https://www.wikidata.org/wiki/Q44325","display_name":"Ontology","level":2,"score":0.7769020795822144},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.6089690327644348},{"id":"https://openalex.org/C23123220","wikidata":"https://www.wikidata.org/wiki/Q816826","display_name":"Information retrieval","level":1,"score":0.40825143456459045},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.36222970485687256},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.327202707529068},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.25999295711517334},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0},{"id":"https://openalex.org/C111472728","wikidata":"https://www.wikidata.org/wiki/Q9471","display_name":"Epistemology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D002477","descriptor_name":"Cells","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D007668","descriptor_name":"Kidney","qualifier_ui":"Q000166","qualifier_name":"cytology","is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015870","descriptor_name":"Gene Expression","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D018875","descriptor_name":"Vocabulary, Controlled","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D022082","descriptor_name":"Cellular Structures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022082","descriptor_name":"Cellular Structures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D022082","descriptor_name":"Cellular Structures","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D053595","descriptor_name":"Embryonic Stem Cells","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-228","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-228","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-228","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23865855","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23865855","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:edoc.mdc-berlin.de:13236","is_oa":false,"landing_page_url":null,"pdf_url":null,"source":{"id":"https://openalex.org/S4306400224","display_name":"MDC Repository (Max-Delbrueck-Center for Molecular Medicine)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I149899117","host_organization_name":"Max Planck Society","host_organization_lineage":["https://openalex.org/I149899117"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"","raw_type":"Article"},{"id":"pmh:oai:europepmc.org:2714511","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3722091","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"},{"id":"pmh:oai:s-space.snu.ac.kr:10371/192317","is_oa":false,"landing_page_url":"https://hdl.handle.net/10371/192317","pdf_url":null,"source":{"id":"https://openalex.org/S4306401345","display_name":"Seoul National University Open Repository (Seoul National University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I139264467","host_organization_name":"Seoul National University","host_organization_lineage":["https://openalex.org/I139264467"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-228","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-228","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-228","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6100000143051147,"id":"https://metadata.un.org/sdg/15","display_name":"Life in Land"}],"awards":[{"id":"https://openalex.org/G8465096193","display_name":null,"funder_award_id":"KU 851/3-1","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321292","display_name":"Seoul National University","ror":"https://ror.org/04h9pn542"},{"id":"https://openalex.org/F4320338236","display_name":"Research Institute for Veterinary Science, College of Veterinary Medicine, Seoul National University","ror":null}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2080008467.pdf","grobid_xml":"https://content.openalex.org/works/W2080008467.grobid-xml"},"referenced_works_count":51,"referenced_works":["https://openalex.org/W41571224","https://openalex.org/W70048713","https://openalex.org/W136568393","https://openalex.org/W202483065","https://openalex.org/W584383526","https://openalex.org/W1482326448","https://openalex.org/W1491772324","https://openalex.org/W1512192323","https://openalex.org/W1571433676","https://openalex.org/W1577783107","https://openalex.org/W1601480441","https://openalex.org/W1654805921","https://openalex.org/W1757909678","https://openalex.org/W1940888119","https://openalex.org/W1999773781","https://openalex.org/W2003550891","https://openalex.org/W2007883639","https://openalex.org/W2018440302","https://openalex.org/W2028998497","https://openalex.org/W2036519060","https://openalex.org/W2044257395","https://openalex.org/W2068720132","https://openalex.org/W2100515808","https://openalex.org/W2103017472","https://openalex.org/W2103260426","https://openalex.org/W2108653105","https://openalex.org/W2109526738","https://openalex.org/W2113142309","https://openalex.org/W2116034137","https://openalex.org/W2123741780","https://openalex.org/W2131036968","https://openalex.org/W2138896629","https://openalex.org/W2147018385","https://openalex.org/W2152722232","https://openalex.org/W2155044423","https://openalex.org/W2160292112","https://openalex.org/W2160589976","https://openalex.org/W2162112148","https://openalex.org/W2162385209","https://openalex.org/W2163670493","https://openalex.org/W2163685645","https://openalex.org/W2167613558","https://openalex.org/W2178026535","https://openalex.org/W2187363965","https://openalex.org/W2394629135","https://openalex.org/W2411719650","https://openalex.org/W2462380532","https://openalex.org/W2489718228","https://openalex.org/W3101974058","https://openalex.org/W3129697073","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2362192218","https://openalex.org/W2381477132","https://openalex.org/W2384888906","https://openalex.org/W2269907498","https://openalex.org/W2376314740","https://openalex.org/W2393185060","https://openalex.org/W2120460904","https://openalex.org/W1975174578","https://openalex.org/W2347278957","https://openalex.org/W1524308472"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1],"need":[2],"for":[3,44,176],"detailed":[4],"description":[5],"and":[6,16,24,31,51,82,119,129,141,164,179,183,225,233,246],"modeling":[7],"of":[8,14,47,57,59,95,203],"cells":[9,58,86,181,194],"drives":[10],"the":[11,45,148,213,230,239,253],"continuous":[12],"generation":[13],"large":[15],"diverse":[17,201],"datasets.":[18],"Unfortunately,":[19],"there":[20],"exists":[21],"no":[22],"systematic":[23],"comprehensive":[25],"way":[26,109],"to":[27,54,69,125,145],"organize":[28],"these":[29],"datasets":[30],"their":[32],"information.":[33],"CELDA":[34,62,105,146,158,168,197,249],"(Cell:":[35],"Expression,":[36],"Localization,":[37],"Development,":[38],"Anatomy)":[39],"is":[40,63,169,250],"a":[41,64,97,108,173,188],"novel":[42,98],"ontology":[43,99,150],"association":[46],"primary":[48],"experimental":[49],"data":[50,191],"derived":[52],"knowledge":[53],"various":[55],"types":[56,72,202,222],"organisms.":[60],"RESULTS:":[61],"structure":[65],"that":[66,110],"can":[67,198],"help":[68],"categorize":[70],"cell":[71,206,221],"based":[73,190],"on":[74,193,229,238,243],"species,":[75],"anatomical":[76,234],"localization,":[77],"subcellular":[78],"structures,":[79],"developmental":[80],"stages":[81],"origin.":[83],"It":[84,208],"targets":[85],"in":[87,92,106,133,186,236],"vitro":[88],"as":[89,91,115,117,172],"well":[90],"vivo.":[93],"Instead":[94],"developing":[96],"from":[100,223,252],"scratch,":[101],"we":[102],"carefully":[103],"designed":[104],"such":[107],"existing":[111,135,139],"ontologies":[112,140],"were":[113,123],"integrated":[114,211],"much":[116],"possible,":[118],"only":[120],"minimal":[121],"extensions":[122],"performed":[124],"cover":[126],"those":[127],"classes":[128,163],"areas":[130],"not":[131],"present":[132],"any":[134],"model.":[136],"Currently,":[137],"ten":[138],"models":[142],"are":[143],"linked":[144],"through":[147],"top-level":[149],"BioTop.":[151],"Together":[152],"with":[153],"15.439":[154],"newly":[155],"created":[156],"classes,":[157],"contains":[159],"more":[160],"than":[161],"196.000":[162],"233.670":[165],"relationship":[166],"axioms.":[167],"primarily":[170],"used":[171],"representational":[174],"framework":[175],"modeling,":[177],"analyzing":[178],"comparing":[180],"within":[182,212],"across":[184],"species":[185],"CellFinder,":[187,216],"web":[189],"repository":[192],"(http://cellfinder.org).":[195],"CONCLUSIONS:":[196],"semantically":[199],"link":[200],"information":[204,242],"about":[205],"types.":[207],"has":[209],"been":[210],"research":[214],"platform":[215],"where":[217],"it":[218],"exemplarily":[219],"relates":[220],"liver":[224],"kidney":[226],"during":[227],"development":[228],"one":[231],"hand":[232],"locations":[235],"humans":[237],"other,":[240],"integrating":[241],"all":[244],"spatial":[245],"temporal":[247],"stages.":[248],"available":[251],"CellFinder":[254],"website:":[255],"http://cellfinder.org/about/ontology.":[256]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2019,"cited_by_count":3},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":2}],"updated_date":"2026-05-21T06:26:12.895304","created_date":"2025-10-10T00:00:00"}
