{"id":"https://openalex.org/W2116877734","doi":"https://doi.org/10.1186/1471-2105-14-225","title":"SNVHMM: predicting single nucleotide variants from next generation sequencing","display_name":"SNVHMM: predicting single nucleotide variants from next generation sequencing","publication_year":2013,"publication_date":"2013-07-15","ids":{"openalex":"https://openalex.org/W2116877734","doi":"https://doi.org/10.1186/1471-2105-14-225","mag":"2116877734","pmid":"https://pubmed.ncbi.nlm.nih.gov/23855743"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-225","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-225","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-225","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-225","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5077814036","display_name":"Jiawen Bian","orcid":"https://orcid.org/0000-0002-2017-7845"},"institutions":[{"id":"https://openalex.org/I4210109259","display_name":"Methodist Hospital","ror":"https://ror.org/01r5p9y80","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802827176","https://openalex.org/I4210109259"]},{"id":"https://openalex.org/I3124059619","display_name":"China University of Geosciences","ror":"https://ror.org/04gcegc37","country_code":"CN","type":"education","lineage":["https://openalex.org/I3124059619"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["CN","US"],"is_corresponding":true,"raw_author_name":"Jiawen Bian","raw_affiliation_strings":["Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","School of Mathematics and Physics, China University of Geosciences, Wuhan, 430074, China","Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA","School of Mathematics and Physics, China University of Geosciences, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]},{"raw_affiliation_string":"School of Mathematics and Physics, China University of Geosciences, Wuhan, 430074, China","institution_ids":["https://openalex.org/I3124059619"]},{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]},{"raw_affiliation_string":"School of Mathematics and Physics, China University of Geosciences, Wuhan, China","institution_ids":["https://openalex.org/I3124059619"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100714204","display_name":"Chenglin Liu","orcid":"https://orcid.org/0000-0003-4411-8548"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210109259","display_name":"Methodist Hospital","ror":"https://ror.org/01r5p9y80","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802827176","https://openalex.org/I4210109259"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Chenglin Liu","raw_affiliation_strings":["Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100359668","display_name":"Hongyan Wang","orcid":"https://orcid.org/0000-0002-6109-1036"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210109259","display_name":"Methodist Hospital","ror":"https://ror.org/01r5p9y80","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802827176","https://openalex.org/I4210109259"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Hongyan Wang","raw_affiliation_strings":["Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012602052","display_name":"Jing Xing","orcid":"https://orcid.org/0009-0001-5310-1708"},"institutions":[{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]},{"id":"https://openalex.org/I4210109259","display_name":"Methodist Hospital","ror":"https://ror.org/01r5p9y80","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802827176","https://openalex.org/I4210109259"]},{"id":"https://openalex.org/I4210099437","display_name":"Hubei University Of Economics","ror":"https://ror.org/012a84b59","country_code":"CN","type":"education","lineage":["https://openalex.org/I4210099437"]}],"countries":["CN","US"],"is_corresponding":false,"raw_author_name":"Jing Xing","raw_affiliation_strings":["Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","Department of Statistics, Hubei University of Economics, Wuhan, 430025, China","Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA","Department of Statistics, Hubei University of Economics, Wuhan, China"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Statistics, Hubei University of Economics, Wuhan, 430025, China","institution_ids":["https://openalex.org/I4210099437"]},{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Statistics, Hubei University of Economics, Wuhan, China","institution_ids":["https://openalex.org/I4210099437"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5015229953","display_name":"Priyanka Kachroo","orcid":"https://orcid.org/0000-0002-3563-7832"},"institutions":[{"id":"https://openalex.org/I4210109259","display_name":"Methodist Hospital","ror":"https://ror.org/01r5p9y80","country_code":"US","type":"healthcare","lineage":["https://openalex.org/I2802827176","https://openalex.org/I4210109259"]},{"id":"https://openalex.org/I205783295","display_name":"Cornell University","ror":"https://ror.org/05bnh6r87","country_code":"US","type":"education","lineage":["https://openalex.org/I205783295"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Priyanka Kachroo","raw_affiliation_strings":["Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA"],"affiliations":[{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, 77030, TX, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]},{"raw_affiliation_string":"Department of Radiology, The Methodist Hospital Research Institute, Weill Cornell Medical College, Houston, USA","institution_ids":["https://openalex.org/I4210109259","https://openalex.org/I205783295"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5106792514","display_name":"Xiaobo Zhou","orcid":null},"institutions":[{"id":"https://openalex.org/I47251452","display_name":"Wake Forest University","ror":"https://ror.org/0207ad724","country_code":"US","type":"education","lineage":["https://openalex.org/I47251452"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Xiaobo Zhou","raw_affiliation_strings":["Department of Diagnostic Radiology, Center for Bioinformatics & Systems Biology, Wake Forest University - School of Medicine, Winston-Salem, 27103, NC, USA","Department of Diagnostic Radiology, Center for Bioinformatics & Systems Biology, Wake Forest University - School of Medicine, Winston-Salem, USA"],"affiliations":[{"raw_affiliation_string":"Department of Diagnostic Radiology, Center for Bioinformatics & Systems Biology, Wake Forest University - School of Medicine, Winston-Salem, 27103, NC, USA","institution_ids":["https://openalex.org/I47251452"]},{"raw_affiliation_string":"Department of Diagnostic Radiology, Center for Bioinformatics & Systems Biology, Wake Forest University - School of Medicine, Winston-Salem, USA","institution_ids":["https://openalex.org/I47251452"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5077814036"],"corresponding_institution_ids":["https://openalex.org/I205783295","https://openalex.org/I3124059619","https://openalex.org/I4210109259"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.1166,"has_fulltext":true,"cited_by_count":6,"citation_normalized_percentile":{"value":0.59059425,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":96},"biblio":{"volume":"14","issue":"1","first_page":"225","last_page":"225"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11287","display_name":"Cancer Genomics and Diagnostics","score":0.9991000294685364,"subfield":{"id":"https://openalex.org/subfields/1306","display_name":"Cancer Research"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11213","display_name":"Genomic variations and chromosomal abnormalities","score":0.9980999827384949,"subfield":{"id":"https://openalex.org/subfields/1311","display_name":"Genetics"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9962999820709229,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/dna-sequencing","display_name":"DNA sequencing","score":0.6232026219367981},{"id":"https://openalex.org/keywords/bayes-theorem","display_name":"Bayes' theorem","score":0.5360185503959656},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5305980443954468},{"id":"https://openalex.org/keywords/context","display_name":"Context (archaeology)","score":0.5141492486000061},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.47202247381210327},{"id":"https://openalex.org/keywords/hidden-markov-model","display_name":"Hidden Markov model","score":0.4452814757823944},{"id":"https://openalex.org/keywords/deep-sequencing","display_name":"Deep sequencing","score":0.442863792181015},{"id":"https://openalex.org/keywords/reference-genome","display_name":"Reference genome","score":0.4120033085346222},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.3830128014087677},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3654082715511322},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34943777322769165},{"id":"https://openalex.org/keywords/bayesian-probability","display_name":"Bayesian probability","score":0.29445764422416687},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.2827904224395752},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2497655749320984},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.1756574809551239}],"concepts":[{"id":"https://openalex.org/C51679486","wikidata":"https://www.wikidata.org/wiki/Q380546","display_name":"DNA sequencing","level":3,"score":0.6232026219367981},{"id":"https://openalex.org/C207201462","wikidata":"https://www.wikidata.org/wiki/Q182505","display_name":"Bayes' theorem","level":3,"score":0.5360185503959656},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5305980443954468},{"id":"https://openalex.org/C2779343474","wikidata":"https://www.wikidata.org/wiki/Q3109175","display_name":"Context (archaeology)","level":2,"score":0.5141492486000061},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.47202247381210327},{"id":"https://openalex.org/C23224414","wikidata":"https://www.wikidata.org/wiki/Q176769","display_name":"Hidden Markov model","level":2,"score":0.4452814757823944},{"id":"https://openalex.org/C132917006","wikidata":"https://www.wikidata.org/wiki/Q5250436","display_name":"Deep sequencing","level":4,"score":0.442863792181015},{"id":"https://openalex.org/C192953774","wikidata":"https://www.wikidata.org/wiki/Q7307127","display_name":"Reference genome","level":4,"score":0.4120033085346222},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.3830128014087677},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3654082715511322},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34943777322769165},{"id":"https://openalex.org/C107673813","wikidata":"https://www.wikidata.org/wiki/Q812534","display_name":"Bayesian probability","level":2,"score":0.29445764422416687},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.2827904224395752},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2497655749320984},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.1756574809551239},{"id":"https://openalex.org/C151730666","wikidata":"https://www.wikidata.org/wiki/Q7205","display_name":"Paleontology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002874","descriptor_name":"Chromosome Mapping","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008390","descriptor_name":"Markov Chains","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011237","descriptor_name":"Predictive Value of Tests","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D012045","descriptor_name":"Regulatory Sequences, Nucleic Acid","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D014644","descriptor_name":"Genetic Variation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015894","descriptor_name":"Genome, Human","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017422","descriptor_name":"Sequence Analysis, DNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D023281","descriptor_name":"Genomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059014","descriptor_name":"High-Throughput Nucleotide Sequencing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-14-225","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-225","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-225","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23855743","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23855743","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2714851","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3718670","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-225","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-225","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-225","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.4099999964237213,"id":"https://metadata.un.org/sdg/1","display_name":"No poverty"}],"awards":[{"id":"https://openalex.org/G1060346003","display_name":null,"funder_award_id":"R01DE022676","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G13557379","display_name":null,"funder_award_id":"U01 CA166886-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G2504770780","display_name":null,"funder_award_id":"1R01DE022676-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4066787487","display_name":null,"funder_award_id":"R01DE022676-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G4380237420","display_name":null,"funder_award_id":"R01LM010185-03","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6556760511","display_name":null,"funder_award_id":"U01HL111560","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G6836066074","display_name":null,"funder_award_id":"R01LM010185","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G7952760586","display_name":null,"funder_award_id":"U01HL111560-01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8288036582","display_name":null,"funder_award_id":"NIH R01","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8523599045","display_name":null,"funder_award_id":"R01DE02267","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"},{"id":"https://openalex.org/G8574605435","display_name":null,"funder_award_id":"DE022676","funder_id":"https://openalex.org/F4320332161","funder_display_name":"National Institutes of Health"}],"funders":[{"id":"https://openalex.org/F4320332161","display_name":"National Institutes of Health","ror":"https://ror.org/01cwqze88"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2116877734.pdf","grobid_xml":"https://content.openalex.org/works/W2116877734.grobid-xml"},"referenced_works_count":22,"referenced_works":["https://openalex.org/W1984068087","https://openalex.org/W2039104488","https://openalex.org/W2039488327","https://openalex.org/W2044539313","https://openalex.org/W2049633694","https://openalex.org/W2061008984","https://openalex.org/W2061680337","https://openalex.org/W2067888173","https://openalex.org/W2070152906","https://openalex.org/W2072082513","https://openalex.org/W2076367236","https://openalex.org/W2078167976","https://openalex.org/W2101035019","https://openalex.org/W2108234281","https://openalex.org/W2112113834","https://openalex.org/W2124960286","https://openalex.org/W2125838338","https://openalex.org/W2127515057","https://openalex.org/W2149377910","https://openalex.org/W2161724277","https://openalex.org/W2161815151","https://openalex.org/W2168950020"],"related_works":["https://openalex.org/W1969673184","https://openalex.org/W3132115146","https://openalex.org/W2619166255","https://openalex.org/W2472738690","https://openalex.org/W1539994441","https://openalex.org/W3011303654","https://openalex.org/W2074464258","https://openalex.org/W2359210733","https://openalex.org/W1970342753","https://openalex.org/W3089600567"],"abstract_inverted_index":{"SNVHMM":[0,26,29],"can":[1,21],"detect":[2],"SNVs":[3,58],"from":[4],"NGS":[5],"cancer":[6],"data":[7,19],"efficiently":[8],"even":[9],"if":[10],"the":[11,31,46,52,55],"sequence":[12],"depth":[13],"is":[14],"very":[15,23],"low.":[16],"The":[17],"training":[18],"size":[20],"be":[22],"small":[24],"for":[25,48,57],"to":[27,50],"work.":[28],"incorporated":[30],"base":[32],"quality":[33,36],"and":[34,41,43],"mapping":[35],"of":[37,54],"all":[38],"observed":[39],"bases":[40],"reads,":[42],"also":[44],"provides":[45],"option":[47],"users":[49],"choose":[51],"confidence":[53],"observation":[56],"prediction.":[59]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2017,"cited_by_count":2},{"year":2015,"cited_by_count":1}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}
