{"id":"https://openalex.org/W2156174513","doi":"https://doi.org/10.1186/1471-2105-14-213","title":"PFClust: a novel parameter free clustering algorithm","display_name":"PFClust: a novel parameter free clustering algorithm","publication_year":2013,"publication_date":"2013-07-03","ids":{"openalex":"https://openalex.org/W2156174513","doi":"https://doi.org/10.1186/1471-2105-14-213","mag":"2156174513","pmid":"https://pubmed.ncbi.nlm.nih.gov/23819480"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-213","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5065502322","display_name":"Lazaros Mavridis","orcid":"https://orcid.org/0000-0001-5001-9445"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Lazaros Mavridis","raw_affiliation_strings":["Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK. lazaros.mavridis.lm@gmail.com","Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK"],"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK. lazaros.mavridis.lm@gmail.com","institution_ids":["https://openalex.org/I16835326"]},{"raw_affiliation_string":"Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK","institution_ids":["https://openalex.org/I16835326"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5073880821","display_name":"Neetika Nath","orcid":"https://orcid.org/0000-0002-2156-9576"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Neetika Nath","raw_affiliation_strings":["Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK"],"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK","institution_ids":["https://openalex.org/I16835326"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046050351","display_name":"John B. O. Mitchell","orcid":"https://orcid.org/0000-0002-0379-6097"},"institutions":[{"id":"https://openalex.org/I16835326","display_name":"University of St Andrews","ror":"https://ror.org/02wn5qz54","country_code":"GB","type":"education","lineage":["https://openalex.org/I16835326"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"John BO Mitchell","raw_affiliation_strings":["Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK"],"affiliations":[{"raw_affiliation_string":"Biomedical Sciences Research Complex and EaStCHEM School of Chemistry, Purdie Building, University of St Andrews, North Haugh, St Andrews, KY16 9ST, Scotland, UK","institution_ids":["https://openalex.org/I16835326"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5065502322"],"corresponding_institution_ids":["https://openalex.org/I16835326"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.9852,"has_fulltext":true,"cited_by_count":17,"citation_normalized_percentile":{"value":0.93987493,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":97},"biblio":{"volume":"14","issue":"1","first_page":"213","last_page":"213"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10637","display_name":"Advanced Clustering Algorithms Research","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11269","display_name":"Algorithms and Data Compression","score":0.9970999956130981,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10057","display_name":"Face and Expression Recognition","score":0.9944999814033508,"subfield":{"id":"https://openalex.org/subfields/1707","display_name":"Computer Vision and Pattern Recognition"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/cluster-analysis","display_name":"Cluster analysis","score":0.6343739032745361},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.569717526435852},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.4583342671394348},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.42772069573402405},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.35777199268341064},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3506550192832947},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.2780892550945282},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.23271465301513672},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.17562836408615112},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.086825430393219},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.07517725229263306}],"concepts":[{"id":"https://openalex.org/C73555534","wikidata":"https://www.wikidata.org/wiki/Q622825","display_name":"Cluster analysis","level":2,"score":0.6343739032745361},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.569717526435852},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.4583342671394348},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.42772069573402405},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.35777199268341064},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3506550192832947},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.2780892550945282},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.23271465301513672},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.17562836408615112},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.086825430393219},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.07517725229263306}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016000","descriptor_name":"Cluster Analysis","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017434","descriptor_name":"Protein Structure, Tertiary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017510","descriptor_name":"Protein Folding","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-14-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23819480","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23819480","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2740557","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3747858","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3747858","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3747858","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:research-repository.st-andrews.ac.uk:10023/3930","is_oa":true,"landing_page_url":"https://hdl.handle.net/10023/3930","pdf_url":null,"source":{"id":"https://openalex.org/S4306400230","display_name":"St Andrews Research Repository (St Andrews Research Repository)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I16835326","host_organization_name":"University of St Andrews","host_organization_lineage":["https://openalex.org/I16835326"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Journal article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-213","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-213","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-213","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320320064","display_name":"Scottish Funding Council","ror":"https://ror.org/056bwcz71"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2156174513.pdf","grobid_xml":"https://content.openalex.org/works/W2156174513.grobid-xml"},"referenced_works_count":35,"referenced_works":["https://openalex.org/W1493454437","https://openalex.org/W1510029899","https://openalex.org/W1578379794","https://openalex.org/W1673310716","https://openalex.org/W1972098431","https://openalex.org/W1987971958","https://openalex.org/W1990368529","https://openalex.org/W1992419399","https://openalex.org/W2007995029","https://openalex.org/W2011430131","https://openalex.org/W2011832962","https://openalex.org/W2033403400","https://openalex.org/W2039777025","https://openalex.org/W2056957086","https://openalex.org/W2071759662","https://openalex.org/W2071949631","https://openalex.org/W2085277871","https://openalex.org/W2112012991","https://openalex.org/W2114910510","https://openalex.org/W2124241917","https://openalex.org/W2125852558","https://openalex.org/W2128306147","https://openalex.org/W2130479394","https://openalex.org/W2133098435","https://openalex.org/W2136504847","https://openalex.org/W2141885858","https://openalex.org/W2152498377","https://openalex.org/W2160223767","https://openalex.org/W2163895365","https://openalex.org/W2171975443","https://openalex.org/W2396031973","https://openalex.org/W2999729612","https://openalex.org/W4210623056","https://openalex.org/W4234244775","https://openalex.org/W4249267531"],"related_works":["https://openalex.org/W2051487156","https://openalex.org/W2073681303","https://openalex.org/W2544423928","https://openalex.org/W2804364458","https://openalex.org/W2053286651","https://openalex.org/W4298130764","https://openalex.org/W2181743346","https://openalex.org/W2187401768","https://openalex.org/W2132641928","https://openalex.org/W2181413294"],"abstract_inverted_index":{"We":[0],"show":[1],"that":[2,43],"PFClust":[3,44],"is":[4,24],"able":[5,25],"to":[6,26,32],"cluster":[7],"the":[8,19,30,39,56,64],"test":[9],"datasets":[10,41],"a":[11,60],"little":[12],"better,":[13],"on":[14,38],"average,":[15],"than":[16],"any":[17,34],"of":[18,69],"other":[20],"algorithms,":[21],"and":[22],"furthermore":[23],"do":[27],"this":[28],"without":[29],"need":[31],"specify":[33],"external":[35],"parameters.":[36],"Results":[37],"synthetic":[40],"demonstrate":[42],"generates":[45],"meaningful":[46],"clusters,":[47],"while":[48],"our":[49],"algorithm":[50],"also":[51],"shows":[52],"excellent":[53],"agreement":[54],"with":[55],"correct":[57],"assignments":[58],"for":[59],"dataset":[61],"extracted":[62],"from":[63],"CATH":[65],"part-manually":[66],"curated":[67],"classification":[68],"protein":[70],"domain":[71],"structures.":[72]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":3},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":3},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-20T23:20:44.827607","created_date":"2025-10-10T00:00:00"}
