{"id":"https://openalex.org/W2010353070","doi":"https://doi.org/10.1186/1471-2105-14-183","title":"\u0394 \u0394PT: a comprehensive toolbox for the analysis of protein motion","display_name":"\u0394 \u0394PT: a comprehensive toolbox for the analysis of protein motion","publication_year":2013,"publication_date":"2013-06-07","ids":{"openalex":"https://openalex.org/W2010353070","doi":"https://doi.org/10.1186/1471-2105-14-183","mag":"2010353070","pmid":"https://pubmed.ncbi.nlm.nih.gov/23758746"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-183","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5058535122","display_name":"Thomas L. Rodgers","orcid":"https://orcid.org/0000-0002-4025-3753"},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":true,"raw_author_name":"Thomas L Rodgers","raw_affiliation_strings":["Biophysical Sciences Institute, Durham University, Durham, UK. thomas.rodgers@durham.ac.uk","Biophysical Sciences Institute, Durham University, Durham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK. thomas.rodgers@durham.ac.uk","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5051766939","display_name":"David Burnell","orcid":null},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"David Burnell","raw_affiliation_strings":["Biophysical Sciences Institute, Durham University, Durham, UK","Department of Chemistry, Durham University, Durham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"Department of Chemistry, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010581084","display_name":"Phil D Townsend","orcid":null},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Phil D Townsend","raw_affiliation_strings":["Biophysical Sciences Institute, Durham University, Durham, UK","School of Biological and Biomedical Sciences, Durham University, Durham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"School of Biological and Biomedical Sciences, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5069937415","display_name":"Ehmke Pohl","orcid":"https://orcid.org/0000-0002-9949-4471"},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Ehmke Pohl","raw_affiliation_strings":["Biophysical Sciences Institute, Durham University, Durham, UK","Department of Chemistry, Durham University, Durham, UK","School of Biological and Biomedical Sciences, Durham University, Durham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"Department of Chemistry, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"School of Biological and Biomedical Sciences, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5063438794","display_name":"Martin J. Cann","orcid":"https://orcid.org/0000-0001-6305-8769"},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Martin J Cann","raw_affiliation_strings":["Biophysical Sciences Institute, Durham University, Durham, UK","School of Biological and Biomedical Sciences, Durham University, Durham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"School of Biological and Biomedical Sciences, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5016391170","display_name":"Mark R. Wilson","orcid":"https://orcid.org/0000-0001-6413-2780"},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Mark R Wilson","raw_affiliation_strings":["Biophysical Sciences Institute, Durham University, Durham, UK","Department of Chemistry, Durham University, Durham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"Department of Chemistry, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5052385071","display_name":"Tom McLeish","orcid":"https://orcid.org/0000-0002-2025-0299"},"institutions":[{"id":"https://openalex.org/I190082696","display_name":"Durham University","ror":"https://ror.org/01v29qb04","country_code":"GB","type":"education","lineage":["https://openalex.org/I190082696"]}],"countries":["GB"],"is_corresponding":false,"raw_author_name":"Tom CB McLeish","raw_affiliation_strings":["Biophysical Sciences Institute, Durham University, Durham, UK","Department of Physics, Durham University, Durham, UK"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Biophysical Sciences Institute, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]},{"raw_affiliation_string":"Department of Physics, Durham University, Durham, UK","institution_ids":["https://openalex.org/I190082696"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":7,"corresponding_author_ids":["https://openalex.org/A5058535122"],"corresponding_institution_ids":["https://openalex.org/I190082696"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.3462,"has_fulltext":true,"cited_by_count":22,"citation_normalized_percentile":{"value":0.79835734,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"14","issue":"1","first_page":"183","last_page":"183"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9521999955177307,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.9521999955177307,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11162","display_name":"Enzyme Structure and Function","score":0.028999999165534973,"subfield":{"id":"https://openalex.org/subfields/2505","display_name":"Materials Chemistry"},"field":{"id":"https://openalex.org/fields/25","display_name":"Materials Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11809","display_name":"Advanced NMR Techniques and Applications","score":0.0052999998442828655,"subfield":{"id":"https://openalex.org/subfields/1607","display_name":"Spectroscopy"},"field":{"id":"https://openalex.org/fields/16","display_name":"Chemistry"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/toolbox","display_name":"Toolbox","score":0.7844885587692261},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5990481376647949},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank (RCSB PDB)","score":0.5816609859466553},{"id":"https://openalex.org/keywords/software","display_name":"Software","score":0.5777638554573059},{"id":"https://openalex.org/keywords/protein-data-bank","display_name":"Protein Data Bank","score":0.4859410524368286},{"id":"https://openalex.org/keywords/computational-science","display_name":"Computational science","score":0.42553600668907166},{"id":"https://openalex.org/keywords/protein-structure","display_name":"Protein structure","score":0.4169255495071411},{"id":"https://openalex.org/keywords/biological-system","display_name":"Biological system","score":0.40382492542266846},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.38842886686325073},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3776955306529999},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.36183589696884155},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.3266216516494751},{"id":"https://openalex.org/keywords/physics","display_name":"Physics","score":0.29683953523635864},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.11886817216873169},{"id":"https://openalex.org/keywords/programming-language","display_name":"Programming language","score":0.1017773449420929},{"id":"https://openalex.org/keywords/nuclear-magnetic-resonance","display_name":"Nuclear magnetic resonance","score":0.09136924147605896}],"concepts":[{"id":"https://openalex.org/C2777655017","wikidata":"https://www.wikidata.org/wiki/Q1501161","display_name":"Toolbox","level":2,"score":0.7844885587692261},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5990481376647949},{"id":"https://openalex.org/C65556437","wikidata":"https://www.wikidata.org/wiki/Q766195","display_name":"Protein Data Bank (RCSB PDB)","level":2,"score":0.5816609859466553},{"id":"https://openalex.org/C2777904410","wikidata":"https://www.wikidata.org/wiki/Q7397","display_name":"Software","level":2,"score":0.5777638554573059},{"id":"https://openalex.org/C119145174","wikidata":"https://www.wikidata.org/wiki/Q7251429","display_name":"Protein Data Bank","level":3,"score":0.4859410524368286},{"id":"https://openalex.org/C459310","wikidata":"https://www.wikidata.org/wiki/Q117801","display_name":"Computational science","level":1,"score":0.42553600668907166},{"id":"https://openalex.org/C47701112","wikidata":"https://www.wikidata.org/wiki/Q735188","display_name":"Protein structure","level":2,"score":0.4169255495071411},{"id":"https://openalex.org/C186060115","wikidata":"https://www.wikidata.org/wiki/Q30336093","display_name":"Biological system","level":1,"score":0.40382492542266846},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.38842886686325073},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3776955306529999},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.36183589696884155},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.3266216516494751},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.29683953523635864},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.11886817216873169},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.1017773449420929},{"id":"https://openalex.org/C46141821","wikidata":"https://www.wikidata.org/wiki/Q209402","display_name":"Nuclear magnetic resonance","level":1,"score":0.09136924147605896}],"mesh":[{"descriptor_ui":"D009038","descriptor_name":"Motion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009038","descriptor_name":"Motion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009038","descriptor_name":"Motion","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019277","descriptor_name":"Entropy","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D056004","descriptor_name":"Molecular Dynamics Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":7,"locations":[{"id":"doi:10.1186/1471-2105-14-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23758746","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23758746","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pure.atira.dk:openaire_cris_publications/1148e9fc-3723-4374-a012-3716f31a03a0","is_oa":false,"landing_page_url":"https://research.manchester.ac.uk/en/publications/1148e9fc-3723-4374-a012-3716f31a03a0","pdf_url":null,"source":{"id":"https://openalex.org/S4306400662","display_name":"Research Explorer (The University of Manchester)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I28407311","host_organization_name":"University of Manchester","host_organization_lineage":["https://openalex.org/I28407311"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"Rodgers, T L, Burnell, D, Townsend, P D, Pohl, E, Cann, M J, Wilson, M R & McLeish, T C B 2013, '\u0394\u0394PT: A comprehensive toolbox for the analysis of protein motion', BMC Bioinformatics. https://doi.org/10.1186/1471-2105-14-183","raw_type":"info:eu-repo/semantics/publishedVersion"},{"id":"pmh:oai:dro.dur.ac.uk.OAI2:11242","is_oa":true,"landing_page_url":"http://dro.dur.ac.uk/11242/","pdf_url":null,"source":{"id":"https://openalex.org/S4377196258","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"acceptedVersion","is_accepted":true,"is_published":false,"raw_source_name":"BMC bioinformatics, 2013, Vol.14(1), pp.183 [Peer Reviewed Journal]","raw_type":"Article"},{"id":"pmh:oai:durham-repository.worktribe.com:1481494","is_oa":true,"landing_page_url":"https://durham-repository.worktribe.com/output/1481494","pdf_url":null,"source":{"id":"https://openalex.org/S4306400188","display_name":"Durham Research Online (Durham University)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I190082696","host_organization_name":"Durham University","host_organization_lineage":["https://openalex.org/I190082696"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"publishedVersion"},{"id":"pmh:oai:europepmc.org:2687900","is_oa":true,"landing_page_url":"http://europepmc.org/articles/PMC3689072","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"","raw_type":"Text"},{"id":"pmh:oai:pubmedcentral.nih.gov:3689072","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3689072","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-183","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-183","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-183","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G5462668524","display_name":null,"funder_award_id":"EP/H051759/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"},{"id":"https://openalex.org/G8043332045","display_name":"New Multiscale Tools for Protein Physics: Thermal Protein Dynamics in Signalling and Allostery.","funder_award_id":"EP/H051759/1","funder_id":"https://openalex.org/F4320334627","funder_display_name":"Engineering and Physical Sciences Research Council"}],"funders":[{"id":"https://openalex.org/F4320334627","display_name":"Engineering and Physical Sciences Research Council","ror":"https://ror.org/0439y7842"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2010353070.pdf","grobid_xml":"https://content.openalex.org/works/W2010353070.grobid-xml"},"referenced_works_count":59,"referenced_works":["https://openalex.org/W313358157","https://openalex.org/W1597817991","https://openalex.org/W1966078827","https://openalex.org/W1968407616","https://openalex.org/W1970328902","https://openalex.org/W1972244704","https://openalex.org/W1972317081","https://openalex.org/W1978349370","https://openalex.org/W1988553868","https://openalex.org/W1992490978","https://openalex.org/W1997145576","https://openalex.org/W1997310186","https://openalex.org/W1998643862","https://openalex.org/W2000544785","https://openalex.org/W2000690605","https://openalex.org/W2004067483","https://openalex.org/W2015942556","https://openalex.org/W2023309667","https://openalex.org/W2032702737","https://openalex.org/W2038442918","https://openalex.org/W2046314964","https://openalex.org/W2047222464","https://openalex.org/W2051519450","https://openalex.org/W2057112255","https://openalex.org/W2061938171","https://openalex.org/W2063962473","https://openalex.org/W2068128475","https://openalex.org/W2069777230","https://openalex.org/W2072865911","https://openalex.org/W2082462938","https://openalex.org/W2083638958","https://openalex.org/W2084584451","https://openalex.org/W2085227451","https://openalex.org/W2088214345","https://openalex.org/W2101017457","https://openalex.org/W2102449622","https://openalex.org/W2102513649","https://openalex.org/W2106988671","https://openalex.org/W2110630433","https://openalex.org/W2112712631","https://openalex.org/W2113971181","https://openalex.org/W2114876189","https://openalex.org/W2116498327","https://openalex.org/W2118572661","https://openalex.org/W2123681603","https://openalex.org/W2130479394","https://openalex.org/W2134528197","https://openalex.org/W2137630005","https://openalex.org/W2139531945","https://openalex.org/W2140889378","https://openalex.org/W2141920771","https://openalex.org/W2152820192","https://openalex.org/W2155137057","https://openalex.org/W2156115459","https://openalex.org/W2158528359","https://openalex.org/W2160451368","https://openalex.org/W2162166182","https://openalex.org/W2168873128","https://openalex.org/W2503993098"],"related_works":["https://openalex.org/W3126783617","https://openalex.org/W2090630809","https://openalex.org/W2088162897","https://openalex.org/W2732388178","https://openalex.org/W3093468851","https://openalex.org/W4353055924","https://openalex.org/W2806488847","https://openalex.org/W2119891507","https://openalex.org/W2491049015","https://openalex.org/W2002698756"],"abstract_inverted_index":{"BACKGROUND:":[0],"Normal":[1],"Mode":[2],"Analysis":[3],"is":[4,43],"one":[5],"of":[6,25,48,60,75,83,91,100,116,132],"the":[7,23,58,76,84,108],"most":[8],"successful":[9],"techniques":[10,133],"for":[11],"studying":[12],"motions":[13],"in":[14],"proteins":[15],"and":[16,32,36,52,69,98,120,134],"macromolecules.":[17],"It":[18,56],"can":[19],"provide":[20],"information":[21],"on":[22],"mechanism":[24],"protein":[26,38,88],"functions,":[27],"used":[28],"to":[29,112,125],"aid":[30],"crystallography":[31],"NMR":[33],"data":[34],"reconstruction,":[35],"calculate":[37],"free":[39],"energies.":[40],"RESULTS:":[41],"\u0394\u0394PT":[42],"a":[44,113,130],"toolbox":[45,106],"allowing":[46],"calculation":[47,74,99],"elastic":[49],"network":[50],"models":[51],"principle":[53],"component":[54],"analysis.":[55],"allows":[57,81,121],"analysis":[59],"pdb":[61],"files":[62],"or":[63,95],"trajectories":[64],"taken":[65],"from;":[66],"Gromacs,":[67],"Amber,":[68],"DL_POLY.":[70],"As":[71],"well":[72],"as":[73],"normal":[77,127],"modes":[78,85,92,128],"it":[79],"also":[80],"comparison":[82],"with":[86,93],"experimental":[87],"motion,":[89],"variation":[90],"mutation":[94],"ligand":[96],"binding,":[97],"molecular":[101],"dynamic":[102],"entropies.":[103],"CONCLUSIONS:":[104],"This":[105],"makes":[107],"respective":[109],"tools":[110],"available":[111],"wide":[114],"community":[115],"potential":[117],"NMA":[118],"users,":[119],"them":[122],"unrivalled":[123],"ability":[124],"analyse":[126],"using":[129],"variety":[131],"current":[135],"software.":[136]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2022,"cited_by_count":2},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2015,"cited_by_count":4},{"year":2014,"cited_by_count":2},{"year":2013,"cited_by_count":3}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}
