{"id":"https://openalex.org/W2024831026","doi":"https://doi.org/10.1186/1471-2105-14-127","title":"VaccImm: simulating peptide vaccination in cancer therapy","display_name":"VaccImm: simulating peptide vaccination in cancer therapy","publication_year":2013,"publication_date":"2013-04-15","ids":{"openalex":"https://openalex.org/W2024831026","doi":"https://doi.org/10.1186/1471-2105-14-127","mag":"2024831026","pmid":"https://pubmed.ncbi.nlm.nih.gov/23586423"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-14-127","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-127","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-127","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-127","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5011094483","display_name":"Joachim von Eichborn","orcid":null},"institutions":[{"id":"https://openalex.org/I4210139777","display_name":"Berlin Institute of Health at Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/0493xsw21","country_code":"DE","type":"facility","lineage":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Joachim von Eichborn","raw_affiliation_strings":["Charit\u00e9-Universit\u00e4tsmedizin Berlin, Institute for Physiology, Berlin, Germany","Charit\u00e9\u2010Universit\u00e4tsmedizin Berlin Institute for Physiology, Structural Bioinformatics Group Berlin Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9-Universit\u00e4tsmedizin Berlin, Institute for Physiology, Berlin, Germany","institution_ids":["https://openalex.org/I4210139777","https://openalex.org/I7877124"]},{"raw_affiliation_string":"Charit\u00e9\u2010Universit\u00e4tsmedizin Berlin Institute for Physiology, Structural Bioinformatics Group Berlin Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045344576","display_name":"Anna Lena Woelke","orcid":null},"institutions":[{"id":"https://openalex.org/I75951250","display_name":"Freie Universit\u00e4t Berlin","ror":"https://ror.org/046ak2485","country_code":"DE","type":"education","lineage":["https://openalex.org/I75951250"]},{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":false,"raw_author_name":"Anna Lena Woelke","raw_affiliation_strings":["Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Lindenberger Weg 80, Berlin, 13125, Germany","Freie Universit\u00e4t Berlin, Institut f\u00fcr Chemie, Fabeckstrasse 36a, Berlin, 14195, Germany","Freie Universit\u00e4t Berlin, Institut f\u00fcr Chemie, Berlin, Germany","Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Berlin, Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Lindenberger Weg 80, Berlin, 13125, Germany","institution_ids":["https://openalex.org/I7877124"]},{"raw_affiliation_string":"Freie Universit\u00e4t Berlin, Institut f\u00fcr Chemie, Fabeckstrasse 36a, Berlin, 14195, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Freie Universit\u00e4t Berlin, Institut f\u00fcr Chemie, Berlin, Germany","institution_ids":["https://openalex.org/I75951250"]},{"raw_affiliation_string":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Berlin, Germany","institution_ids":["https://openalex.org/I7877124"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5010454141","display_name":"Filippo Castiglione","orcid":"https://orcid.org/0000-0002-1442-3552"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Filippo Castiglione","raw_affiliation_strings":["National Research Council of Italy, Institute for Computing Applications, Rome, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"National Research Council of Italy, Institute for Computing Applications, Rome, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5043414157","display_name":"Robert Prei\u00dfner","orcid":"https://orcid.org/0000-0002-2407-1087"},"institutions":[{"id":"https://openalex.org/I7877124","display_name":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin","ror":"https://ror.org/001w7jn25","country_code":"DE","type":"healthcare","lineage":["https://openalex.org/I7877124"]}],"countries":["DE"],"is_corresponding":true,"raw_author_name":"Robert Preissner","raw_affiliation_strings":["Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Lindenberger Weg 80, Berlin, 13125, Germany","Charit\u00e9\u2010Universit\u00e4tsmedizin Berlin Institute for Physiology, Structural Bioinformatics Group Berlin Germany"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Charit\u00e9 - Universit\u00e4tsmedizin Berlin, Institute for Physiology, Structural Bioinformatics Group, Lindenberger Weg 80, Berlin, 13125, Germany","institution_ids":["https://openalex.org/I7877124"]},{"raw_affiliation_string":"Charit\u00e9\u2010Universit\u00e4tsmedizin Berlin Institute for Physiology, Structural Bioinformatics Group Berlin Germany","institution_ids":["https://openalex.org/I7877124"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5043414157"],"corresponding_institution_ids":["https://openalex.org/I7877124"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":0.4127,"has_fulltext":true,"cited_by_count":16,"citation_normalized_percentile":{"value":0.62458084,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":99},"biblio":{"volume":"14","issue":"1","first_page":"127","last_page":"127"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T12576","display_name":"vaccines and immunoinformatics approaches","score":0.9761000275611877,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10580","display_name":"Immunotherapy and Immune Responses","score":0.006300000008195639,"subfield":{"id":"https://openalex.org/subfields/2403","display_name":"Immunology"},"field":{"id":"https://openalex.org/fields/24","display_name":"Immunology and Microbiology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12391","display_name":"Artificial Immune Systems Applications","score":0.004399999976158142,"subfield":{"id":"https://openalex.org/subfields/2204","display_name":"Biomedical Engineering"},"field":{"id":"https://openalex.org/fields/22","display_name":"Engineering"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/vaccination","display_name":"Vaccination","score":0.7751716375350952},{"id":"https://openalex.org/keywords/immune-system","display_name":"Immune system","score":0.5961344242095947},{"id":"https://openalex.org/keywords/peptide-vaccine","display_name":"Peptide vaccine","score":0.5837616920471191},{"id":"https://openalex.org/keywords/cancer","display_name":"Cancer","score":0.5633746385574341},{"id":"https://openalex.org/keywords/in-silico","display_name":"In silico","score":0.5163692235946655},{"id":"https://openalex.org/keywords/epitope","display_name":"Epitope","score":0.5095379948616028},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.4577246606349945},{"id":"https://openalex.org/keywords/antigen","display_name":"Antigen","score":0.4405214488506317},{"id":"https://openalex.org/keywords/population","display_name":"Population","score":0.42283302545547485},{"id":"https://openalex.org/keywords/cancer-therapy","display_name":"Cancer therapy","score":0.42161625623703003},{"id":"https://openalex.org/keywords/immunotherapy","display_name":"Immunotherapy","score":0.4124816060066223},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.397070050239563},{"id":"https://openalex.org/keywords/immunology","display_name":"Immunology","score":0.3719356060028076},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.34236860275268555},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.32946544885635376},{"id":"https://openalex.org/keywords/medicine","display_name":"Medicine","score":0.2930159568786621},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.07037770748138428}],"concepts":[{"id":"https://openalex.org/C22070199","wikidata":"https://www.wikidata.org/wiki/Q192995","display_name":"Vaccination","level":2,"score":0.7751716375350952},{"id":"https://openalex.org/C8891405","wikidata":"https://www.wikidata.org/wiki/Q1059","display_name":"Immune system","level":2,"score":0.5961344242095947},{"id":"https://openalex.org/C2776789287","wikidata":"https://www.wikidata.org/wiki/Q7166532","display_name":"Peptide vaccine","level":4,"score":0.5837616920471191},{"id":"https://openalex.org/C121608353","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer","level":2,"score":0.5633746385574341},{"id":"https://openalex.org/C2775905019","wikidata":"https://www.wikidata.org/wiki/Q192572","display_name":"In silico","level":3,"score":0.5163692235946655},{"id":"https://openalex.org/C195616568","wikidata":"https://www.wikidata.org/wiki/Q128711","display_name":"Epitope","level":3,"score":0.5095379948616028},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.4577246606349945},{"id":"https://openalex.org/C147483822","wikidata":"https://www.wikidata.org/wiki/Q103537","display_name":"Antigen","level":2,"score":0.4405214488506317},{"id":"https://openalex.org/C2908647359","wikidata":"https://www.wikidata.org/wiki/Q2625603","display_name":"Population","level":2,"score":0.42283302545547485},{"id":"https://openalex.org/C2983331546","wikidata":"https://www.wikidata.org/wiki/Q12078","display_name":"Cancer therapy","level":3,"score":0.42161625623703003},{"id":"https://openalex.org/C2777701055","wikidata":"https://www.wikidata.org/wiki/Q1427096","display_name":"Immunotherapy","level":3,"score":0.4124816060066223},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.397070050239563},{"id":"https://openalex.org/C203014093","wikidata":"https://www.wikidata.org/wiki/Q101929","display_name":"Immunology","level":1,"score":0.3719356060028076},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.34236860275268555},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.32946544885635376},{"id":"https://openalex.org/C71924100","wikidata":"https://www.wikidata.org/wiki/Q11190","display_name":"Medicine","level":0,"score":0.2930159568786621},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.07037770748138428},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C99454951","wikidata":"https://www.wikidata.org/wiki/Q932068","display_name":"Environmental health","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000595","descriptor_name":"Amino Acid Sequence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D000939","descriptor_name":"Epitopes","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005838","descriptor_name":"Genotype","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008285","descriptor_name":"Major Histocompatibility Complex","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D009369","descriptor_name":"Neoplasms","qualifier_ui":"Q000628","qualifier_name":"therapy","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010455","descriptor_name":"Peptides","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D019496","descriptor_name":"Cancer Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D019496","descriptor_name":"Cancer Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D019496","descriptor_name":"Cancer Vaccines","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D019496","descriptor_name":"Cancer Vaccines","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D019496","descriptor_name":"Cancer Vaccines","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D019496","descriptor_name":"Cancer Vaccines","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000276","qualifier_name":"immunology","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D022223","descriptor_name":"Vaccines, Subunit","qualifier_ui":"Q000627","qualifier_name":"therapeutic use","is_major_topic":false},{"descriptor_ui":"D047368","descriptor_name":"Tumor Burden","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047368","descriptor_name":"Tumor Burden","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D047368","descriptor_name":"Tumor Burden","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-14-127","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-127","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-127","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23586423","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23586423","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2648737","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3651379","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-14-127","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-14-127","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-14-127","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Good health and well-being","score":0.6600000262260437,"id":"https://metadata.un.org/sdg/3"}],"awards":[{"id":"https://openalex.org/G1524413327","display_name":null,"funder_award_id":"GRK1360","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"},{"id":"https://openalex.org/G7825398958","display_name":null,"funder_award_id":"GRK1772","funder_id":"https://openalex.org/F4320320879","funder_display_name":"Deutsche Forschungsgemeinschaft"}],"funders":[{"id":"https://openalex.org/F4320320879","display_name":"Deutsche Forschungsgemeinschaft","ror":"https://ror.org/018mejw64"},{"id":"https://openalex.org/F4320321114","display_name":"Bundesministerium f\u00fcr Bildung und Forschung","ror":"https://ror.org/04pz7b180"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2024831026.pdf","grobid_xml":"https://content.openalex.org/works/W2024831026.grobid-xml"},"referenced_works_count":23,"referenced_works":["https://openalex.org/W185032647","https://openalex.org/W1758585762","https://openalex.org/W1968782720","https://openalex.org/W1969344338","https://openalex.org/W2001278825","https://openalex.org/W2004480635","https://openalex.org/W2019711015","https://openalex.org/W2021874876","https://openalex.org/W2028339001","https://openalex.org/W2035240910","https://openalex.org/W2068945309","https://openalex.org/W2072595857","https://openalex.org/W2073076869","https://openalex.org/W2074107830","https://openalex.org/W2099500226","https://openalex.org/W2111392326","https://openalex.org/W2147786987","https://openalex.org/W2152065574","https://openalex.org/W2159183981","https://openalex.org/W2159478099","https://openalex.org/W2160303218","https://openalex.org/W2168874985","https://openalex.org/W2261445083"],"related_works":["https://openalex.org/W1979044599","https://openalex.org/W2021824670","https://openalex.org/W2009867644","https://openalex.org/W1981120125","https://openalex.org/W3036615648","https://openalex.org/W2408448169","https://openalex.org/W4321482651","https://openalex.org/W2363997565","https://openalex.org/W2111743240","https://openalex.org/W1132391452"],"abstract_inverted_index":{"BACKGROUND:":[0],"Despite":[1],"progress":[2,25],"in":[3,17,26,79,129,216,248],"conventional":[4,34],"cancer":[5,7,28,130,249],"therapies,":[6],"is":[8,36,56,60,85,106,181,219],"still":[9],"one":[10],"of":[11,15,24,98,175,187,193,213,245,269],"the":[12,42,77,95,114,119,144,188,194,202,210,225,252,264],"leading":[13],"causes":[14],"death":[16],"industrial":[18],"nations.":[19],"Therefore,":[20,104],"an":[21,51,134],"urgent":[22],"need":[23],"fighting":[27],"remains.":[29],"A":[30],"promising":[31],"alternative":[32],"to":[33,70,108,125,170,183,208,242],"methods":[35],"immune":[37,52,74,177],"therapy.":[38,115,131,250],"This":[39,200],"relies":[40],"on":[41,224],"fact":[43],"that":[44,122,137,262],"low-immunogenic":[45],"tumours":[46],"can":[47],"be":[48],"eradicated":[49],"if":[50],"response":[53,75],"against":[54,76],"them":[55],"induced.":[57],"Peptide":[58],"vaccination":[59,84,128,140,215,247,261],"carried":[61],"out":[62],"by":[63,141],"injecting":[64],"tumour":[65,78],"peptides":[66],"into":[67,259],"a":[68,72,86,160,239],"patient":[69],"trigger":[71],"specific":[73],"its":[80],"entirety.":[81],"However,":[82],"peptide":[83,127,139,214,246,260,270],"highly":[87],"complicated":[88],"treatment":[89],"and":[90,149,157,191,266],"currently":[91],"many":[92],"factors":[93],"like":[94],"optimal":[96],"number":[97],"epitopes":[99],"are":[100,232],"not":[101],"known":[102],"precisely.":[103],"it":[105],"necessary":[107],"evaluate":[109],"how":[110],"certain":[111],"parameters":[112],"influence":[113],"RESULTS:":[116],"We":[117],"present":[118],"VaccImm":[120,203,218,236],"Server":[121,237],"allows":[123],"users":[124],"simulate":[126],"It":[132],"uses":[133,165],"agent-based":[135],"model":[136,164,180],"simulates":[138],"explicitly":[142],"modelling":[143],"involved":[145],"cells":[146],"(immune":[147],"system":[148],"cancer)":[150],"as":[151,153],"well":[152,206],"molecules":[154],"(antibodies,":[155],"antigens":[156],"semiochemicals).":[158],"As":[159],"new":[161],"feature,":[162],"our":[163],"real":[166],"amino":[167],"acid":[168],"sequences":[169],"represent":[171],"molecular":[172],"binding":[173],"sites":[174],"relevant":[176],"cells.":[178],"The":[179,235],"used":[182],"generate":[184],"detailed":[185],"statistics":[186],"population":[189],"sizes":[190],"states":[192],"single":[195],"cell":[196],"types":[197],"over":[198],"time.":[199],"makes":[201],"web":[204,226],"server":[205],"suited":[207],"examine":[209],"parameter":[211],"space":[212],"silico.":[217],"publicly":[220],"available":[221],"without":[222],"registration":[223],"at":[227],"http://bioinformatics.charite.de/vaccimm;":[228],"all":[229],"major":[230],"browsers":[231],"supported.":[233],"CONCLUSIONS:":[234],"provides":[238],"convenient":[240],"way":[241],"analyze":[243],"properties":[244],"Using":[251],"server,":[253],"we":[254],"could":[255],"gain":[256],"interesting":[257],"insights":[258],"reveal":[263],"complex":[265],"patient-specific":[267],"nature":[268],"vaccination.":[271]},"counts_by_year":[{"year":2026,"cited_by_count":3},{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":3},{"year":2020,"cited_by_count":1},{"year":2019,"cited_by_count":1},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":1},{"year":2016,"cited_by_count":1},{"year":2014,"cited_by_count":2}],"updated_date":"2026-07-25T09:21:30.201066","created_date":"2025-10-10T00:00:00"}
