{"id":"https://openalex.org/W2029008895","doi":"https://doi.org/10.1186/1471-2105-13-s7-s3","title":"Assessing and predicting protein interactions by combining manifold embedding with multiple information integration","display_name":"Assessing and predicting protein interactions by combining manifold embedding with multiple information integration","publication_year":2012,"publication_date":"2012-05-08","ids":{"openalex":"https://openalex.org/W2029008895","doi":"https://doi.org/10.1186/1471-2105-13-s7-s3","mag":"2029008895","pmid":"https://pubmed.ncbi.nlm.nih.gov/22595000"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s7-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s7-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S7-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S7-S3","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5101474410","display_name":"Yingke Lei","orcid":"https://orcid.org/0000-0003-4927-6772"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Ying-Ke Lei","raw_affiliation_strings":["Tongji University, 1239 Siping Road, Shanghai, PR China","Tongji University, 1239 Siping Road, Shanghai, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tongji University, 1239 Siping Road, Shanghai, PR China","institution_ids":["https://openalex.org/I116953780"]},{"raw_affiliation_string":"Tongji University, 1239 Siping Road, Shanghai, P.R. China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019805735","display_name":"Zhu\u2010Hong You","orcid":"https://orcid.org/0000-0003-1266-2696"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]},{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhu-Hong You","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong, 518060, P.R. China","Tongji University, 1239 Siping Road, Shanghai, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong, 518060, P.R. China","institution_ids":["https://openalex.org/I180726961"]},{"raw_affiliation_string":"Tongji University, 1239 Siping Road, Shanghai, P.R. China","institution_ids":["https://openalex.org/I116953780"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5025341885","display_name":"Zhen Ji","orcid":"https://orcid.org/0000-0003-4006-7456"},"institutions":[{"id":"https://openalex.org/I180726961","display_name":"Shenzhen University","ror":"https://ror.org/01vy4gh70","country_code":"CN","type":"education","lineage":["https://openalex.org/I180726961"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Zhen Ji","raw_affiliation_strings":["College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong, 518060, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"College of Computer Science and Software Engineering, Shenzhen University, Shenzhen, Guangdong, 518060, P.R. China","institution_ids":["https://openalex.org/I180726961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5100664608","display_name":"Lin Zhu","orcid":"https://orcid.org/0000-0001-9872-459X"},"institutions":[{"id":"https://openalex.org/I126520041","display_name":"University of Science and Technology of China","ror":"https://ror.org/04c4dkn09","country_code":"CN","type":"education","lineage":["https://openalex.org/I126520041","https://openalex.org/I19820366"]}],"countries":["CN"],"is_corresponding":false,"raw_author_name":"Lin Zhu","raw_affiliation_strings":["Department of Automation, University of Science and Technology of China, Hefei, Anhui, 230027, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Automation, University of Science and Technology of China, Hefei, Anhui, 230027, P.R. China","institution_ids":["https://openalex.org/I126520041"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5060381913","display_name":"De-Shuang Huang","orcid":"https://orcid.org/0000-0002-6759-2691"},"institutions":[{"id":"https://openalex.org/I116953780","display_name":"Tongji University","ror":"https://ror.org/03rc6as71","country_code":"CN","type":"education","lineage":["https://openalex.org/I116953780"]}],"countries":["CN"],"is_corresponding":true,"raw_author_name":"De-Shuang Huang","raw_affiliation_strings":["Tongji University, 1239 Siping Road, Shanghai, P.R. China"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Tongji University, 1239 Siping Road, Shanghai, P.R. China","institution_ids":["https://openalex.org/I116953780"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5060381913"],"corresponding_institution_ids":["https://openalex.org/I116953780"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":2.0864,"has_fulltext":true,"cited_by_count":57,"citation_normalized_percentile":{"value":0.86939769,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":99},"biblio":{"volume":"13","issue":"S7","first_page":"S3","last_page":"S3"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9570000171661377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.9570000171661377,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10044","display_name":"Protein Structure and Dynamics","score":0.01720000058412552,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T12254","display_name":"Machine Learning in Bioinformatics","score":0.0038999998942017555,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.7319419384002686},{"id":"https://openalex.org/keywords/embedding","display_name":"Embedding","score":0.5824770927429199},{"id":"https://openalex.org/keywords/scalability","display_name":"Scalability","score":0.5638224482536316},{"id":"https://openalex.org/keywords/robustness","display_name":"Robustness (evolution)","score":0.4380497932434082},{"id":"https://openalex.org/keywords/data-integration","display_name":"Data integration","score":0.4326581358909607},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4269101619720459},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.41619035601615906},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.38274848461151123},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.35099664330482483},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2797521948814392}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.7319419384002686},{"id":"https://openalex.org/C41608201","wikidata":"https://www.wikidata.org/wiki/Q980509","display_name":"Embedding","level":2,"score":0.5824770927429199},{"id":"https://openalex.org/C48044578","wikidata":"https://www.wikidata.org/wiki/Q727490","display_name":"Scalability","level":2,"score":0.5638224482536316},{"id":"https://openalex.org/C63479239","wikidata":"https://www.wikidata.org/wiki/Q7353546","display_name":"Robustness (evolution)","level":3,"score":0.4380497932434082},{"id":"https://openalex.org/C72634772","wikidata":"https://www.wikidata.org/wiki/Q386824","display_name":"Data integration","level":2,"score":0.4326581358909607},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4269101619720459},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.41619035601615906},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.38274848461151123},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.35099664330482483},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2797521948814392},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.0},{"id":"https://openalex.org/C55493867","wikidata":"https://www.wikidata.org/wiki/Q7094","display_name":"Biochemistry","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D012441","descriptor_name":"Saccharomyces cerevisiae","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016015","descriptor_name":"Logistic Models","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030562","descriptor_name":"Databases, Protein","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D060066","descriptor_name":"Protein Interaction Maps","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-13-s7-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s7-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S7-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22595000","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22595000","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2354523","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3348017","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s7-s3","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s7-s3","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S7-S3","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G2382822222","display_name":"\u57fa\u4e8e\u81ea\u751f\u5f0f\u591a\u76ee\u6807Memetic\u7b97\u6cd5\u7684\u9ad8\u7ef4\u6570\u636e\u7279\u5f81\u9009\u62e9\u7814\u7a76","funder_award_id":"61001185","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G2933830991","display_name":null,"funder_award_id":"60975005","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G3205431995","display_name":"\u57fa\u4e8e\u7f51\u7edc\u62d3\u6251\u7ed3\u6784\u4fe1\u606f\u4e0e\u6570\u636e\u6574\u5408\u7684\u86cb\u767d\u8d28\u76f8\u4e92\u4f5c\u7528\u53ef\u4fe1\u5ea6\u8bc4\u4f30\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61102119","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4491847313","display_name":"\u57fa\u4e8e\u975e\u8d1f\u7a00\u758f\u7f16\u7801\u7684\u4eba\u8138\u8bc6\u522b\u7b97\u6cd5\u7814\u7a76","funder_award_id":"60905023","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G4527330315","display_name":"\u57fa\u4e8e\u8bc6\u522b\u9a71\u52a8\u578b\u6c34\u5e73\u96c6\u65b9\u6cd5\u7684\u590d\u6742\u80cc\u666f\u690d\u7269\u53f6\u7247\u56fe\u50cf\u5206\u5272\u7814\u7a76","funder_award_id":"61005010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5368559053","display_name":"\u57fa\u4e8e\u673a\u5668\u5b66\u4e60\u7684\u86cb\u767d\u8d28\u76f8\u4e92\u4f5c\u7528\u4e0e\u529f\u80fd\u9884\u6d4b\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61133010","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5682096352","display_name":null,"funder_award_id":"31071168","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G5748977933","display_name":"\u57fa\u4e8e\u83cc\u7fa4\u751f\u547d\u5468\u671f\u884c\u4e3a\u7684\u7fa4\u4f53\u667a\u80fd\u4f18\u5316\u6a21\u578b\u4e0e\u7b97\u6cd5\u7814\u7a76","funder_award_id":"71001072","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"},{"id":"https://openalex.org/G6364900093","display_name":"\u4ee3\u8c22\u7ec4\u5b66\u4e2d\u7684\u751f\u7269\u542f\u53d1\u5f0f\u9ad8\u7ef4\u6570\u636e\u7279\u5f81\u9009\u62e9\u65b9\u6cd5\u7814\u7a76","funder_award_id":"61171125","funder_id":"https://openalex.org/F4320321001","funder_display_name":"National Natural Science Foundation of China"}],"funders":[{"id":"https://openalex.org/F4320306076","display_name":"National Science Foundation","ror":"https://ror.org/021nxhr62"},{"id":"https://openalex.org/F4320321001","display_name":"National Natural Science Foundation of China","ror":"https://ror.org/01h0zpd94"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2029008895.pdf","grobid_xml":"https://content.openalex.org/works/W2029008895.grobid-xml"},"referenced_works_count":68,"referenced_works":["https://openalex.org/W1531189931","https://openalex.org/W1595132914","https://openalex.org/W1597538863","https://openalex.org/W1956694423","https://openalex.org/W1975442866","https://openalex.org/W1993229737","https://openalex.org/W1994108141","https://openalex.org/W2001141328","https://openalex.org/W2011039300","https://openalex.org/W2016428546","https://openalex.org/W2030928641","https://openalex.org/W2033855745","https://openalex.org/W2045131140","https://openalex.org/W2050583899","https://openalex.org/W2050721857","https://openalex.org/W2053126761","https://openalex.org/W2053186076","https://openalex.org/W2054360688","https://openalex.org/W2056797853","https://openalex.org/W2061439657","https://openalex.org/W2061632451","https://openalex.org/W2066356146","https://openalex.org/W2075231115","https://openalex.org/W2077776048","https://openalex.org/W2080182143","https://openalex.org/W2080498142","https://openalex.org/W2097308346","https://openalex.org/W2099913238","https://openalex.org/W2100827857","https://openalex.org/W2101236696","https://openalex.org/W2104812688","https://openalex.org/W2107710781","https://openalex.org/W2110482684","https://openalex.org/W2112148214","https://openalex.org/W2116117181","https://openalex.org/W2116447934","https://openalex.org/W2117684310","https://openalex.org/W2122076882","https://openalex.org/W2123643026","https://openalex.org/W2125003829","https://openalex.org/W2133138357","https://openalex.org/W2134962976","https://openalex.org/W2141144953","https://openalex.org/W2141629057","https://openalex.org/W2142337435","https://openalex.org/W2144344817","https://openalex.org/W2147274519","https://openalex.org/W2147774652","https://openalex.org/W2148762636","https://openalex.org/W2149310258","https://openalex.org/W2155004936","https://openalex.org/W2155161883","https://openalex.org/W2155320925","https://openalex.org/W2156287497","https://openalex.org/W2156838815","https://openalex.org/W2158564991","https://openalex.org/W2159460045","https://openalex.org/W2163736554","https://openalex.org/W2165816035","https://openalex.org/W2401610261","https://openalex.org/W2770983033","https://openalex.org/W2917431650","https://openalex.org/W3013880646","https://openalex.org/W3149604617","https://openalex.org/W4213367101","https://openalex.org/W4240430862","https://openalex.org/W4246066782","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2081900870","https://openalex.org/W2389214306","https://openalex.org/W4235240664","https://openalex.org/W2965083567","https://openalex.org/W1838576100","https://openalex.org/W2095886385","https://openalex.org/W2889616422","https://openalex.org/W2089704382","https://openalex.org/W1983399550","https://openalex.org/W3134175397"],"abstract_inverted_index":{"BACKGROUND:":[0],"Protein-protein":[1],"interactions":[2,89,93,125,195],"(PPIs)":[3],"play":[4],"crucial":[5],"roles":[6],"in":[7,29,196],"virtually":[8],"every":[9],"aspect":[10],"of":[11,23,32,88,103,118,167,171],"cellular":[12],"function":[13],"within":[14],"an":[15],"organism.":[16],"Over":[17],"the":[18,21,73,86,104,124,146,178],"last":[19],"decade,":[20],"development":[22],"novel":[24],"high-throughput":[25,44],"techniques":[26],"has":[27],"resulted":[28],"enormous":[30],"amounts":[31],"data":[33,47],"and":[34,55,90,114,135,192],"provided":[35],"valuable":[36],"resources":[37],"for":[38,84],"studying":[39],"protein":[40,45,154],"interactions.":[41,155],"However,":[42],"these":[43,70],"interaction":[46],"are":[48],"often":[49],"associated":[50],"with":[51,98,109],"high":[52,132],"false":[53,56,190,193],"positive":[54,191],"negative":[57,194],"rates.":[58],"It":[59],"is":[60,159,181],"therefore":[61],"highly":[62],"desirable":[63],"to":[64,68,162,187],"develop":[65],"scalable":[66],"methods":[67,148],"identify":[69],"errors":[71],"from":[72],"computational":[74,82],"perspective.":[75],"RESULTS:":[76],"We":[77],"have":[78,131],"developed":[79],"a":[80,165,182],"robust":[81],"technique":[83],"assessing":[85,151],"reliability":[87],"predicting":[91,153],"new":[92],"by":[94,128],"combining":[95],"manifold":[96],"embedding":[97],"multiple":[99],"information":[100],"integration.":[101],"Validation":[102],"proposed":[105,140,179],"method":[106,130,141,158,186],"was":[107],"performed":[108],"extensive":[110],"experiments":[111],"on":[112],"densely-connected":[113,172],"sparse":[115,174],"PPI":[116,168,175,197],"networks":[117,169],"yeast":[119],"respectively.":[120],"Results":[121],"demonstrate":[122],"that":[123],"ranked":[126],"top":[127],"our":[129,157],"functional":[133],"homogeneity":[134],"localization":[136],"coherence.":[137],"CONCLUSIONS:":[138],"Our":[139],"achieves":[142],"better":[143],"performances":[144],"than":[145],"existing":[147],"no":[149],"matter":[150],"or":[152,173],"Furthermore,":[156],"general":[160],"enough":[161],"work":[163],"over":[164],"variety":[166],"irrespectively":[170],"network.":[176],"Therefore,":[177],"algorithm":[180],"much":[183],"more":[184],"promising":[185],"detect":[188],"both":[189],"networks.":[198]},"counts_by_year":[{"year":2023,"cited_by_count":1},{"year":2022,"cited_by_count":5},{"year":2021,"cited_by_count":4},{"year":2020,"cited_by_count":5},{"year":2019,"cited_by_count":5},{"year":2018,"cited_by_count":10},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":6},{"year":2015,"cited_by_count":6},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":4},{"year":2012,"cited_by_count":2}],"updated_date":"2026-07-23T08:03:31.855105","created_date":"2025-10-10T00:00:00"}
