{"id":"https://openalex.org/W2103635790","doi":"https://doi.org/10.1186/1471-2105-13-s6-s5","title":"KIS SPLICE: de-novo calling alternative splicing events from RNA-seq data","display_name":"KIS SPLICE: de-novo calling alternative splicing events from RNA-seq data","publication_year":2012,"publication_date":"2012-04-19","ids":{"openalex":"https://openalex.org/W2103635790","doi":"https://doi.org/10.1186/1471-2105-13-s6-s5","mag":"2103635790","pmid":"https://pubmed.ncbi.nlm.nih.gov/22537044"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s6-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s6-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S6-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S6-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5111888188","display_name":"Gustavo AT Sacomoto","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":true,"raw_author_name":"Gustavo AT Sacomoto","raw_affiliation_strings":["INRIA Grenoble Rh\u00f4ne-Alpes, France"],"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031274742","display_name":"Janice Kielbassa","orcid":null},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Janice Kielbassa","raw_affiliation_strings":["INRIA Grenoble Rhne-Alpes, France","INRIA Grenoble Rh\u00f4ne-Alpes, France"],"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rhne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"INRIA Grenoble Rh\u00f4ne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058310668","display_name":"Rayan Chikhi","orcid":"https://orcid.org/0000-0003-1099-8735"},"institutions":[{"id":"https://openalex.org/I4210133778","display_name":"Inria Rennes - Bretagne Atlantique Research Centre","ror":"https://ror.org/04040yw90","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Rayan Chikhi","raw_affiliation_strings":["Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I4210133778"]},{"raw_affiliation_string":"Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008422748","display_name":"Raluca Uricaru","orcid":"https://orcid.org/0000-0002-5730-6428"},"institutions":[{"id":"https://openalex.org/I4210133778","display_name":"Inria Rennes - Bretagne Atlantique Research Centre","ror":"https://ror.org/04040yw90","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Raluca Uricaru","raw_affiliation_strings":["Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I4210133778"]},{"raw_affiliation_string":"Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5041883978","display_name":"Pavlos Antoniou","orcid":"https://orcid.org/0000-0001-9074-9610"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210133778","display_name":"Inria Rennes - Bretagne Atlantique Research Centre","ror":"https://ror.org/04040yw90","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pavlos Antoniou","raw_affiliation_strings":["Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I4210133778"]},{"raw_affiliation_string":"Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5110531794","display_name":"Marie-France Sagot","orcid":null},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Marie-France Sagot","raw_affiliation_strings":["INRIA Grenoble Rhne-Alpes, France","Universit\u00e9 de Lyon, F-69000, Lyon, France"],"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rhne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, F-69000, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5012897398","display_name":"Pierre Peterlongo","orcid":"https://orcid.org/0000-0003-0776-6407"},"institutions":[{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]},{"id":"https://openalex.org/I4210133778","display_name":"Inria Rennes - Bretagne Atlantique Research Centre","ror":"https://ror.org/04040yw90","country_code":"FR","type":"government","lineage":["https://openalex.org/I1326498283","https://openalex.org/I4210133778"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Pierre Peterlongo","raw_affiliation_strings":["Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France"],"affiliations":[{"raw_affiliation_string":"Centre de recherche INRIA Rennes -Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I4210133778"]},{"raw_affiliation_string":"Centre de recherche INRIA Rennes - Bretagne Atlantique, IRISA, Campus universitaire de Beaulieu, Rennes, France","institution_ids":["https://openalex.org/I1326498283"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5087487293","display_name":"Vincent Lacroix","orcid":"https://orcid.org/0000-0002-4235-8524"},"institutions":[{"id":"https://openalex.org/I100532134","display_name":"Universit\u00e9 Claude Bernard Lyon 1","ror":"https://ror.org/029brtt94","country_code":"FR","type":"education","lineage":["https://openalex.org/I100532134","https://openalex.org/I203339264"]},{"id":"https://openalex.org/I1326498283","display_name":"Institut national de recherche en informatique et en automatique","ror":"https://ror.org/02kvxyf05","country_code":"FR","type":"funder","lineage":["https://openalex.org/I1326498283"]}],"countries":["FR"],"is_corresponding":false,"raw_author_name":"Vincent Lacroix","raw_affiliation_strings":["INRIA Grenoble Rhne-Alpes, France","Universit\u00e9 de Lyon, F-69000, Lyon, France"],"affiliations":[{"raw_affiliation_string":"INRIA Grenoble Rhne-Alpes, France","institution_ids":["https://openalex.org/I1326498283"]},{"raw_affiliation_string":"Universit\u00e9 de Lyon, F-69000, Lyon, France","institution_ids":["https://openalex.org/I100532134"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":8,"corresponding_author_ids":["https://openalex.org/A5111888188"],"corresponding_institution_ids":["https://openalex.org/I1326498283"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":5.244,"has_fulltext":true,"cited_by_count":122,"citation_normalized_percentile":{"value":0.96561163,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":100},"biblio":{"volume":"13","issue":"S6","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998999834060669,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10521","display_name":"RNA and protein synthesis mechanisms","score":0.9991999864578247,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T11482","display_name":"RNA modifications and cancer","score":0.9990000128746033,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/de-bruijn-graph","display_name":"De Bruijn graph","score":0.7026386260986328},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.6405959129333496},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.5861696004867554},{"id":"https://openalex.org/keywords/rna-seq","display_name":"RNA-Seq","score":0.5416591167449951},{"id":"https://openalex.org/keywords/intron","display_name":"Intron","score":0.5249131917953491},{"id":"https://openalex.org/keywords/rna-splicing","display_name":"RNA splicing","score":0.5226447582244873},{"id":"https://openalex.org/keywords/alternative-splicing","display_name":"Alternative splicing","score":0.5146282911300659},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.4937628209590912},{"id":"https://openalex.org/keywords/trans-splicing","display_name":"Trans-splicing","score":0.47681018710136414},{"id":"https://openalex.org/keywords/rna","display_name":"RNA","score":0.4555772840976715},{"id":"https://openalex.org/keywords/transcriptome","display_name":"Transcriptome","score":0.43812209367752075},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.43583282828330994},{"id":"https://openalex.org/keywords/splice","display_name":"splice","score":0.4207562506198883},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.37237659096717834},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.35837018489837646},{"id":"https://openalex.org/keywords/graph","display_name":"Graph","score":0.28975623846054077},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.23199650645256042},{"id":"https://openalex.org/keywords/exon","display_name":"Exon","score":0.1970667541027069},{"id":"https://openalex.org/keywords/gene-expression","display_name":"Gene expression","score":0.11232265830039978}],"concepts":[{"id":"https://openalex.org/C20218877","wikidata":"https://www.wikidata.org/wiki/Q3066095","display_name":"De Bruijn graph","level":3,"score":0.7026386260986328},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.6405959129333496},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.5861696004867554},{"id":"https://openalex.org/C107397762","wikidata":"https://www.wikidata.org/wiki/Q2542347","display_name":"RNA-Seq","level":5,"score":0.5416591167449951},{"id":"https://openalex.org/C94671646","wikidata":"https://www.wikidata.org/wiki/Q207551","display_name":"Intron","level":3,"score":0.5249131917953491},{"id":"https://openalex.org/C54458228","wikidata":"https://www.wikidata.org/wiki/Q237218","display_name":"RNA splicing","level":4,"score":0.5226447582244873},{"id":"https://openalex.org/C194583182","wikidata":"https://www.wikidata.org/wiki/Q21114084","display_name":"Alternative splicing","level":4,"score":0.5146282911300659},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.4937628209590912},{"id":"https://openalex.org/C47124935","wikidata":"https://www.wikidata.org/wiki/Q468289","display_name":"Trans-splicing","level":5,"score":0.47681018710136414},{"id":"https://openalex.org/C67705224","wikidata":"https://www.wikidata.org/wiki/Q11053","display_name":"RNA","level":3,"score":0.4555772840976715},{"id":"https://openalex.org/C162317418","wikidata":"https://www.wikidata.org/wiki/Q252857","display_name":"Transcriptome","level":4,"score":0.43812209367752075},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.43583282828330994},{"id":"https://openalex.org/C2780989783","wikidata":"https://www.wikidata.org/wiki/Q7578557","display_name":"splice","level":3,"score":0.4207562506198883},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.37237659096717834},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.35837018489837646},{"id":"https://openalex.org/C132525143","wikidata":"https://www.wikidata.org/wiki/Q141488","display_name":"Graph","level":2,"score":0.28975623846054077},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.23199650645256042},{"id":"https://openalex.org/C36823959","wikidata":"https://www.wikidata.org/wiki/Q373027","display_name":"Exon","level":3,"score":0.1970667541027069},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.11232265830039978}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012015","descriptor_name":"Reference Standards","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D015233","descriptor_name":"Models, Statistical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016678","descriptor_name":"Genome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017398","descriptor_name":"Alternative Splicing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D017423","descriptor_name":"Sequence Analysis, RNA","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020080","descriptor_name":"Tandem Repeat Sequences","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020641","descriptor_name":"Polymorphism, Single Nucleotide","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D059467","descriptor_name":"Transcriptome","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-s6-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s6-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S6-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22537044","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22537044","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:CiteSeerX.psu:10.1.1.988.8658","is_oa":false,"landing_page_url":"http://citeseerx.ist.psu.edu/viewdoc/summary?doi=10.1.1.988.8658","pdf_url":null,"source":null,"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"https://hal.inria.fr/hal-00784407/document/","raw_type":"text"},{"id":"pmh:oai:HAL:hal-00784407v1","is_oa":true,"landing_page_url":"https://inria.hal.science/hal-00784407","pdf_url":null,"source":{"id":"https://openalex.org/S4306402512","display_name":"HAL (Le Centre pour la Communication Scientifique Directe)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1294671590","host_organization_name":"Centre National de la Recherche Scientifique","host_organization_lineage":["https://openalex.org/I1294671590"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, 2012, 13 (Suppl 6), pp.S5. ⟨10.1186/1471-2105-13-S6-S5⟩","raw_type":"Journal articles"},{"id":"pmh:oai:pubmedcentral.nih.gov:3358658","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3358658","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s6-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s6-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S6-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[{"id":"https://openalex.org/G6851345361","display_name":null,"funder_award_id":"Grant","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"},{"id":"https://openalex.org/G7222682759","display_name":null,"funder_award_id":"ANR-2010-COSI-004","funder_id":"https://openalex.org/F4320320883","funder_display_name":"Agence Nationale de la Recherche"}],"funders":[{"id":"https://openalex.org/F4320320883","display_name":"Agence Nationale de la Recherche","ror":"https://ror.org/00rbzpz17"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103635790.pdf","grobid_xml":"https://content.openalex.org/works/W2103635790.grobid-xml"},"referenced_works_count":30,"referenced_works":["https://openalex.org/W1532744586","https://openalex.org/W1850079471","https://openalex.org/W1966822396","https://openalex.org/W1971899779","https://openalex.org/W1983258431","https://openalex.org/W2002354456","https://openalex.org/W2009329319","https://openalex.org/W2010361633","https://openalex.org/W2026035629","https://openalex.org/W2047665315","https://openalex.org/W2048818637","https://openalex.org/W2085806398","https://openalex.org/W2099809434","https://openalex.org/W2101205261","https://openalex.org/W2112888168","https://openalex.org/W2118382442","https://openalex.org/W2122732537","https://openalex.org/W2126419817","https://openalex.org/W2127640118","https://openalex.org/W2136145671","https://openalex.org/W2136651963","https://openalex.org/W2141458291","https://openalex.org/W2154431984","https://openalex.org/W2155804510","https://openalex.org/W2160969485","https://openalex.org/W2219609919","https://openalex.org/W2281218127","https://openalex.org/W2914081640","https://openalex.org/W2916408032","https://openalex.org/W4248144637"],"related_works":["https://openalex.org/W2001319824","https://openalex.org/W2067501355","https://openalex.org/W2008389025","https://openalex.org/W2136950317","https://openalex.org/W2155793948","https://openalex.org/W4389398524","https://openalex.org/W1538327476","https://openalex.org/W2071218173","https://openalex.org/W2038617558","https://openalex.org/W2620694003"],"abstract_inverted_index":{"We":[0],"propose":[1],"new":[2,20],"models":[3],"and":[4],"algorithms":[5],"for":[6,49],"the":[7,16,30,34],"detection":[8],"of":[9,22,37,43],"polymorphism":[10],"in":[11],"RNA-seq":[12,27],"data.":[13],"This":[14],"opens":[15],"way":[17],"to":[18],"a":[19],"kind":[21],"studies":[23],"on":[24],"large":[25],"HTS":[26],"datasets,":[28],"where":[29],"focus":[31],"is":[32,47],"not":[33],"global":[35],"reconstruction":[36],"full-length":[38],"transcripts,":[39],"but":[40],"local":[41],"assembly":[42],"polymorphic":[44],"regions.":[45],"KISSPLICE":[46],"available":[48],"download":[50],"at":[51],"http://alcovna.genouest.org/kissplice/.":[52]},"counts_by_year":[{"year":2026,"cited_by_count":1},{"year":2025,"cited_by_count":5},{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":3},{"year":2022,"cited_by_count":11},{"year":2021,"cited_by_count":7},{"year":2020,"cited_by_count":15},{"year":2019,"cited_by_count":12},{"year":2018,"cited_by_count":11},{"year":2017,"cited_by_count":9},{"year":2016,"cited_by_count":8},{"year":2015,"cited_by_count":10},{"year":2014,"cited_by_count":16},{"year":2013,"cited_by_count":11},{"year":2012,"cited_by_count":2}],"updated_date":"2026-04-10T15:06:20.359241","created_date":"2025-10-10T00:00:00"}