{"id":"https://openalex.org/W2104582152","doi":"https://doi.org/10.1186/1471-2105-13-s4-s5","title":"An ICT infrastructure to integrate clinical and molecular data in oncology research","display_name":"An ICT infrastructure to integrate clinical and molecular data in oncology research","publication_year":2012,"publication_date":"2012-03-28","ids":{"openalex":"https://openalex.org/W2104582152","doi":"https://doi.org/10.1186/1471-2105-13-s4-s5","mag":"2104582152","pmid":"https://pubmed.ncbi.nlm.nih.gov/22536972"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s4-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s4-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S5","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5038921121","display_name":"Daniele Segagni","orcid":null},"institutions":[{"id":"https://openalex.org/I4210105320","display_name":"Fondazione Salvatore Maugeri","ror":"https://ror.org/01e8tvg28","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210105320","https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":true,"raw_author_name":"Daniele Segagni","raw_affiliation_strings":["IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","IRCCS Fondazione Salvatore Maugeri, Pavia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","institution_ids":["https://openalex.org/I4210105320"]},{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, Italy","institution_ids":["https://openalex.org/I4210105320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5067601634","display_name":"Valentina Tibollo","orcid":"https://orcid.org/0000-0003-2687-3822"},"institutions":[{"id":"https://openalex.org/I4210105320","display_name":"Fondazione Salvatore Maugeri","ror":"https://ror.org/01e8tvg28","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210105320","https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Valentina Tibollo","raw_affiliation_strings":["IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","IRCCS Fondazione Salvatore Maugeri, Pavia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","institution_ids":["https://openalex.org/I4210105320"]},{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, Italy","institution_ids":["https://openalex.org/I4210105320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5068449833","display_name":"Arianna Dagliati","orcid":"https://orcid.org/0000-0002-5041-0409"},"institutions":[{"id":"https://openalex.org/I2800920820","display_name":"Istituto Universitario di Studi Superiori di Pavia","ror":"https://ror.org/0290wsh42","country_code":"IT","type":"education","lineage":["https://openalex.org/I2800920820"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Arianna Dagliati","raw_affiliation_strings":["Istituto Universitario di Studi Superiori, Pavia, 27100, Italy","Istituto Universitario di Studi Superiori, Pavia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Istituto Universitario di Studi Superiori, Pavia, 27100, Italy","institution_ids":["https://openalex.org/I2800920820"]},{"raw_affiliation_string":"Istituto Universitario di Studi Superiori, Pavia, Italy","institution_ids":["https://openalex.org/I2800920820"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5031414207","display_name":"Alberto Zambelli","orcid":"https://orcid.org/0000-0002-1374-1831"},"institutions":[{"id":"https://openalex.org/I4210105320","display_name":"Fondazione Salvatore Maugeri","ror":"https://ror.org/01e8tvg28","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210105320","https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Alberto Zambelli","raw_affiliation_strings":["IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","IRCCS Fondazione Salvatore Maugeri, Pavia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","institution_ids":["https://openalex.org/I4210105320"]},{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, Italy","institution_ids":["https://openalex.org/I4210105320"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5008966758","display_name":"Silvia G. Priori","orcid":"https://orcid.org/0000-0001-6877-0288"},"institutions":[{"id":"https://openalex.org/I4210105320","display_name":"Fondazione Salvatore Maugeri","ror":"https://ror.org/01e8tvg28","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210105320","https://openalex.org/I4210153126"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Silvia G Priori","raw_affiliation_strings":["IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","IRCCS Fondazione Salvatore Maugeri, Pavia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, 27100, Italy","institution_ids":["https://openalex.org/I4210105320"]},{"raw_affiliation_string":"IRCCS Fondazione Salvatore Maugeri, Pavia, Italy","institution_ids":["https://openalex.org/I4210105320"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5050932220","display_name":"Riccardo Bellazzi","orcid":"https://orcid.org/0000-0002-6974-9808"},"institutions":[{"id":"https://openalex.org/I25217355","display_name":"University of Pavia","ror":"https://ror.org/00s6t1f81","country_code":"IT","type":"education","lineage":["https://openalex.org/I25217355"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Riccardo Bellazzi","raw_affiliation_strings":["Universit\u00e0 di Pavia, Dipartimento di Informatica e Sistemistica, Pavia, 27100, Italy","Universit\u00e0 di Pavia, Dipartimento di Informatica e Sistemistica, Pavia, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Universit\u00e0 di Pavia, Dipartimento di Informatica e Sistemistica, Pavia, 27100, Italy","institution_ids":["https://openalex.org/I25217355"]},{"raw_affiliation_string":"Universit\u00e0 di Pavia, Dipartimento di Informatica e Sistemistica, Pavia, Italy","institution_ids":["https://openalex.org/I25217355"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5038921121"],"corresponding_institution_ids":["https://openalex.org/I4210105320"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":1.6124,"has_fulltext":true,"cited_by_count":31,"citation_normalized_percentile":{"value":0.83019432,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"13","issue":"S4","first_page":"S5","last_page":"S5"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7671999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.7671999931335449,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.04490000009536743,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10887","display_name":"Bioinformatics and Genomic Networks","score":0.03610000014305115,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/snomed-ct","display_name":"SNOMED CT","score":0.7037354111671448},{"id":"https://openalex.org/keywords/data-warehouse","display_name":"Data warehouse","score":0.6931097507476807},{"id":"https://openalex.org/keywords/biobank","display_name":"Biobank","score":0.6213259696960449},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5347957015037537},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.44102850556373596},{"id":"https://openalex.org/keywords/world-wide-web","display_name":"World Wide Web","score":0.3432909846305847},{"id":"https://openalex.org/keywords/terminology","display_name":"Terminology","score":0.3360394835472107},{"id":"https://openalex.org/keywords/bioinformatics","display_name":"Bioinformatics","score":0.31033870577812195},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.16019532084465027}],"concepts":[{"id":"https://openalex.org/C206497026","wikidata":"https://www.wikidata.org/wiki/Q1753883","display_name":"SNOMED CT","level":3,"score":0.7037354111671448},{"id":"https://openalex.org/C135572916","wikidata":"https://www.wikidata.org/wiki/Q193351","display_name":"Data warehouse","level":2,"score":0.6931097507476807},{"id":"https://openalex.org/C116567970","wikidata":"https://www.wikidata.org/wiki/Q864217","display_name":"Biobank","level":2,"score":0.6213259696960449},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5347957015037537},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.44102850556373596},{"id":"https://openalex.org/C136764020","wikidata":"https://www.wikidata.org/wiki/Q466","display_name":"World Wide Web","level":1,"score":0.3432909846305847},{"id":"https://openalex.org/C547195049","wikidata":"https://www.wikidata.org/wiki/Q1725664","display_name":"Terminology","level":2,"score":0.3360394835472107},{"id":"https://openalex.org/C60644358","wikidata":"https://www.wikidata.org/wiki/Q128570","display_name":"Bioinformatics","level":1,"score":0.31033870577812195},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.16019532084465027},{"id":"https://openalex.org/C41895202","wikidata":"https://www.wikidata.org/wiki/Q8162","display_name":"Linguistics","level":1,"score":0.0},{"id":"https://openalex.org/C138885662","wikidata":"https://www.wikidata.org/wiki/Q5891","display_name":"Philosophy","level":0,"score":0.0}],"mesh":[{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000175","qualifier_name":"diagnosis","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D001943","descriptor_name":"Breast Neoplasms","qualifier_ui":"Q000473","qualifier_name":"pathology","is_major_topic":false},{"descriptor_ui":"D006751","descriptor_name":"Hospital Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006751","descriptor_name":"Hospital Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006751","descriptor_name":"Hospital Information Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D008495","descriptor_name":"Medical Oncology","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016208","descriptor_name":"Databases, Factual","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016247","descriptor_name":"Information Storage and Retrieval","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057170","descriptor_name":"Translational Research, Biomedical","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":5,"locations":[{"id":"doi:10.1186/1471-2105-13-s4-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s4-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22536972","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22536972","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:boa.unimib.it:10281/560821","is_oa":true,"landing_page_url":"https://hdl.handle.net/10281/560821","pdf_url":null,"source":{"id":"https://openalex.org/S4306401259","display_name":"BOA (University of Milano-Bicocca)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I66752286","host_organization_name":"University of Milano-Bicocca","host_organization_lineage":["https://openalex.org/I66752286"],"host_organization_lineage_names":[],"type":"repository"},"license":"other-oa","license_id":"https://openalex.org/licenses/other-oa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"info:eu-repo/semantics/article"},{"id":"pmh:oai:doaj.org/article:a04328d76f634bebbee37e96bb5a7c57","is_oa":true,"landing_page_url":"https://doaj.org/article/a04328d76f634bebbee37e96bb5a7c57","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss Suppl 4, p S5 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3303735","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3303735","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s4-s5","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s4-s5","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S5","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"score":0.6299999952316284,"display_name":"Industry, innovation and infrastructure","id":"https://metadata.un.org/sdg/9"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320322965","display_name":"Collegio Ghislieri di Pavia","ror":"https://ror.org/04zs2z136"},{"id":"https://openalex.org/F4320326078","display_name":"Regione Lombardia","ror":null}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2104582152.pdf","grobid_xml":"https://content.openalex.org/works/W2104582152.grobid-xml"},"referenced_works_count":18,"referenced_works":["https://openalex.org/W33602417","https://openalex.org/W54739280","https://openalex.org/W1536690700","https://openalex.org/W1594279064","https://openalex.org/W1941464129","https://openalex.org/W2001968322","https://openalex.org/W2102626131","https://openalex.org/W2104608657","https://openalex.org/W2108163339","https://openalex.org/W2109977913","https://openalex.org/W2117815774","https://openalex.org/W2123152121","https://openalex.org/W2123712309","https://openalex.org/W2128903627","https://openalex.org/W2131660156","https://openalex.org/W2181632771","https://openalex.org/W4212866204","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2748952813","https://openalex.org/W1603034342","https://openalex.org/W3142240870","https://openalex.org/W2197816736","https://openalex.org/W2405923535","https://openalex.org/W1974183414","https://openalex.org/W192618920","https://openalex.org/W4310562106","https://openalex.org/W2104582152","https://openalex.org/W2460694911"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,299],"ONCO-i2b2":[2],"platform":[3],"is":[4,22,67,280],"a":[5,63,77,103,146,152,181,193,281,324],"bioinformatics":[6,318],"tool":[7,79],"designed":[8],"to":[9,70,93,144,155,199,295,317],"integrate":[10],"clinical":[11,133,213],"and":[12,15,29,36,48,89,123,128,159,168,190,207,212,251,271,288],"research":[13,18,52,149],"data":[14,64,84,98,104,115,178,238,319],"support":[16,296],"translational":[17,297],"in":[19,102,263],"oncology.":[20],"It":[21],"implemented":[23,294],"by":[24,42,312],"the":[25,30,39,43,49,91,117,125,132,136,156,172,176,230,264,307],"University":[26],"of":[27,73,171,183,192,239,255,284,302,309],"Pavia":[28],"IRCCS":[31],"Fondazione":[32],"Maugeri":[33],"hospital":[34,126,137],"(FSM),":[35],"grounded":[37],"on":[38,62,229],"software":[40],"developed":[41,223],"Informatics":[44],"for":[45],"Integrating":[46],"Biology":[47],"Bedside":[50],"(i2b2)":[51],"center.":[53],"I2b2":[54,97],"has":[55],"delivered":[56],"an":[57,224],"open":[58],"source":[59],"suite":[60],"based":[61],"warehouse,":[65,105],"which":[66],"efficiently":[68],"interrogated":[69],"find":[71],"sets":[72],"interesting":[74],"patients":[75,243],"through":[76,180],"query":[78,95,326],"interface.":[80],"METHODS:":[81],"Onco-i2b2":[82,113,236,279],"integrates":[83],"coming":[85],"from":[86,116,124,135,216],"multiple":[87],"sources":[88],"allows":[90],"users":[92],"jointly":[94],"them.":[96],"are":[99,108],"then":[100],"stored":[101],"where":[106],"facts":[107],"hierarchically":[109],"structured":[110],"as":[111,204,321,323],"ontologies.":[112],"gathers":[114],"FSM":[118],"pathology":[119],"unit":[120],"(PU)":[121],"database":[122,174],"biobank":[127,173],"merges":[129],"them":[130,256],"with":[131,175,244],"information":[134,138],"system.":[139],"Our":[140],"main":[141],"effort":[142],"was":[143],"provide":[145],"robust":[147],"integrated":[148,286],"environment,":[150],"giving":[151],"particular":[153],"emphasis":[154],"integration":[157,191],"process":[158],"facing":[160],"different":[161],"challenges,":[162],"consecutively":[163],"listed:":[164],"biospecimen":[165],"samples":[166],"privacy":[167],"anonymization;":[169],"synchronization":[170],"i2b2":[177],"warehouse":[179],"series":[182],"Extract,":[184],"Transform,":[185],"Load":[186],"(ETL)":[187],"operations;":[188],"development":[189],"Natural":[194],"Language":[195],"Processing":[196],"(NLP)":[197],"module,":[198],"retrieve":[200],"coded":[201],"information,":[202],"such":[203],"SNOMED":[205,226],"terms":[206],"malignant":[208],"tumors":[209],"(TNM)":[210],"classifications,":[211],"tests":[214],"results":[215],"unstructured":[217],"medical":[218,276],"records.":[219],"Furthermore,":[220],"we":[221],"have":[222,257],"internal":[225],"ontology":[227],"rested":[228],"NCBO":[231],"BioPortal":[232],"web":[233],"services.":[234],"RESULTS:":[235],"manages":[237],"more":[240,267],"than":[241,268],"6,500":[242],"breast":[245],"cancer":[246,265],"diagnosis":[247],"collected":[248],"between":[249],"2001":[250],"2011":[252],"(over":[253],"390":[254],"at":[258],"least":[259],"one":[260],"biological":[261],"sample":[262],"biobank),":[266],"47,000":[269],"visits":[270],"96,000":[272],"observations":[273],"over":[274],"960":[275],"concepts.":[277],"CONCLUSIONS:":[278],"concrete":[282],"example":[283],"how":[285],"Information":[287],"Communication":[289],"Technology":[290],"architecture":[291],"can":[292],"be":[293],"research.":[298],"next":[300],"steps":[301],"our":[303],"project":[304],"will":[305],"involve":[306],"extension":[308],"its":[310],"capabilities":[311],"implementing":[313],"new":[314],"plug-in":[315],"devoted":[316],"analysis":[320],"well":[322],"temporal":[325],"module.":[327]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2023,"cited_by_count":2},{"year":2022,"cited_by_count":1},{"year":2021,"cited_by_count":2},{"year":2020,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":2},{"year":2017,"cited_by_count":2},{"year":2016,"cited_by_count":2},{"year":2015,"cited_by_count":3},{"year":2014,"cited_by_count":5},{"year":2013,"cited_by_count":3},{"year":2012,"cited_by_count":1}],"updated_date":"2026-04-29T09:16:38.111599","created_date":"2025-10-10T00:00:00"}