{"id":"https://openalex.org/W2145264699","doi":"https://doi.org/10.1186/1471-2105-13-s4-s4","title":"GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database","display_name":"GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity database","publication_year":2012,"publication_date":"2012-03-28","ids":{"openalex":"https://openalex.org/W2145264699","doi":"https://doi.org/10.1186/1471-2105-13-s4-s4","mag":"2145264699","pmid":"https://pubmed.ncbi.nlm.nih.gov/22536971"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s4-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s4-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5090302917","display_name":"Paolo Pannarale","orcid":null},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Paolo Pannarale","raw_affiliation_strings":["IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","institution_ids":[]},{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5045977416","display_name":"Domenico Catalano","orcid":"https://orcid.org/0000-0001-9862-322X"},"institutions":[{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT"],"is_corresponding":false,"raw_author_name":"Domenico Catalano","raw_affiliation_strings":["Institute of Plant Genetics (IGV), National Research Council (CNR), Bari, 70100, Italy","Institute of Plant Genetics (IGV), National Research Council (CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute of Plant Genetics (IGV), National Research Council (CNR), Bari, 70100, Italy","institution_ids":["https://openalex.org/I4210155236"]},{"raw_affiliation_string":"Institute of Plant Genetics (IGV), National Research Council (CNR), Bari, Italy","institution_ids":["https://openalex.org/I4210155236"]}]},{"author_position":"middle","author":{"id":null,"display_name":"Giorgio De Caro","orcid":null},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Giorgio De Caro","raw_affiliation_strings":["Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, 70100, Italy","Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, 70100, Italy","institution_ids":["https://openalex.org/I4210155236"]},{"raw_affiliation_string":"Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, Italy","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5082373890","display_name":"Giorgio Grillo","orcid":"https://orcid.org/0000-0002-0137-5811"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":false,"raw_author_name":"Giorgio Grillo","raw_affiliation_strings":["Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, 70100, Italy","Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, 70100, Italy","institution_ids":["https://openalex.org/I4210155236"]},{"raw_affiliation_string":"Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, Italy","institution_ids":["https://openalex.org/I197604219"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5027698019","display_name":"Pietro Leo","orcid":"https://orcid.org/0000-0002-0253-559X"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Pietro Leo","raw_affiliation_strings":["IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","institution_ids":[]},{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058631488","display_name":"Graziano Pappad\u00e0","orcid":null},"institutions":[],"countries":[],"is_corresponding":false,"raw_author_name":"Graziano Pappad\u00e0","raw_affiliation_strings":["Exhicon srl, Trani, 70059, Italy","Exhicon srl, Trani, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Exhicon srl, Trani, 70059, Italy","institution_ids":[]},{"raw_affiliation_string":"Exhicon srl, Trani, Italy","institution_ids":[]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5053123039","display_name":"Francesco Rubino","orcid":"https://orcid.org/0000-0001-9090-6794"},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Francesco Rubino","raw_affiliation_strings":["IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","institution_ids":[]},{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5081898622","display_name":"Gaetano Scioscia","orcid":null},"institutions":[{"id":"https://openalex.org/I1341412227","display_name":"IBM (United States)","ror":"https://ror.org/05hh8d621","country_code":"US","type":"company","lineage":["https://openalex.org/I1341412227"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Gaetano Scioscia","raw_affiliation_strings":["IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, 70100, Italy","institution_ids":[]},{"raw_affiliation_string":"IBM GBS BAO Advanced Analytics Services and MBLab, Bari, Italy","institution_ids":["https://openalex.org/I1341412227"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5044640697","display_name":"Flavio Licciulli","orcid":"https://orcid.org/0000-0002-1861-8947"},"institutions":[{"id":"https://openalex.org/I197604219","display_name":"National Academies of Sciences, Engineering, and Medicine","ror":"https://ror.org/02eq2w707","country_code":"US","type":"government","lineage":["https://openalex.org/I197604219"]},{"id":"https://openalex.org/I4210155236","display_name":"National Research Council","ror":"https://ror.org/04zaypm56","country_code":"IT","type":"nonprofit","lineage":["https://openalex.org/I4210155236"]}],"countries":["IT","US"],"is_corresponding":true,"raw_author_name":"Flavio Licciulli","raw_affiliation_strings":["Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, 70100, Italy","Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, Italy"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, 70100, Italy","institution_ids":["https://openalex.org/I4210155236"]},{"raw_affiliation_string":"Institute for Biomedical Technologies (ITB), National Research Council (CNR), Bari, Italy","institution_ids":["https://openalex.org/I197604219"]}]}],"institutions":[],"countries_distinct_count":2,"institutions_distinct_count":3,"corresponding_author_ids":["https://openalex.org/A5044640697"],"corresponding_institution_ids":["https://openalex.org/I197604219","https://openalex.org/I4210155236"],"apc_list":{"value":2790,"currency":"USD","value_usd":2790},"apc_paid":{"value":2790,"currency":"USD","value_usd":2790},"fwci":4.1311,"has_fulltext":true,"cited_by_count":11,"citation_normalized_percentile":{"value":0.94033023,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":98},"biblio":{"volume":"13","issue":"S4","first_page":"S4","last_page":"S4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.5378999710083008,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},"topics":[{"id":"https://openalex.org/T10215","display_name":"Semantic Web and Ontologies","score":0.5378999710083008,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.23909999430179596,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14427","display_name":"Environmental Monitoring and Data Management","score":0.016200000420212746,"subfield":{"id":"https://openalex.org/subfields/1907","display_name":"Geology"},"field":{"id":"https://openalex.org/fields/19","display_name":"Earth and Planetary Sciences"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/genbank","display_name":"GenBank","score":0.8163266181945801},{"id":"https://openalex.org/keywords/database","display_name":"Database","score":0.5968388915061951},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5458704233169556},{"id":"https://openalex.org/keywords/expert-system","display_name":"Expert system","score":0.514628529548645},{"id":"https://openalex.org/keywords/dna-microarray","display_name":"DNA microarray","score":0.5132393836975098},{"id":"https://openalex.org/keywords/biodiversity","display_name":"Biodiversity","score":0.487897127866745},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.4694250226020813},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.2163783609867096},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.16778677701950073},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.1124042272567749},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.0884956419467926}],"concepts":[{"id":"https://openalex.org/C79029880","wikidata":"https://www.wikidata.org/wiki/Q901755","display_name":"GenBank","level":3,"score":0.8163266181945801},{"id":"https://openalex.org/C77088390","wikidata":"https://www.wikidata.org/wiki/Q8513","display_name":"Database","level":1,"score":0.5968388915061951},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5458704233169556},{"id":"https://openalex.org/C58328972","wikidata":"https://www.wikidata.org/wiki/Q184609","display_name":"Expert system","level":2,"score":0.514628529548645},{"id":"https://openalex.org/C95371953","wikidata":"https://www.wikidata.org/wiki/Q591745","display_name":"DNA microarray","level":4,"score":0.5132393836975098},{"id":"https://openalex.org/C130217890","wikidata":"https://www.wikidata.org/wiki/Q47041","display_name":"Biodiversity","level":2,"score":0.487897127866745},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.4694250226020813},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.2163783609867096},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.16778677701950073},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.1124042272567749},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0884956419467926},{"id":"https://openalex.org/C150194340","wikidata":"https://www.wikidata.org/wiki/Q26972","display_name":"Gene expression","level":3,"score":0.0},{"id":"https://openalex.org/C18903297","wikidata":"https://www.wikidata.org/wiki/Q7150","display_name":"Ecology","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D000818","descriptor_name":"Animals","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005103","descriptor_name":"Expert Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005103","descriptor_name":"Expert Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D005103","descriptor_name":"Expert Systems","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D019295","descriptor_name":"Computational Biology","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D020407","descriptor_name":"Internet","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D030561","descriptor_name":"Databases, Nucleic Acid","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D044822","descriptor_name":"Biodiversity","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-s4-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s4-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22536971","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22536971","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:pubmedcentral.nih.gov:3303717","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3303717","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":true,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"},{"id":"pmh:oai:pure.qub.ac.uk/portal:publications/93db7502-60e0-4d81-be05-781eb1ea2b62","is_oa":false,"landing_page_url":"https://pure.qub.ac.uk/en/publications/93db7502-60e0-4d81-be05-781eb1ea2b62","pdf_url":null,"source":{"id":"https://openalex.org/S4306402319","display_name":"Research Portal (Queen's University Belfast)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I126231945","host_organization_name":"Queen's University Belfast","host_organization_lineage":["https://openalex.org/I126231945"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"Pannarale, P, Catalano, D, De, C G, Grillo, G, Leo, P, Pappad\u00e0, G, Rubino, F, Scioscia, G & Licciulli, F 2012, 'GIDL: a rule based expert system for GenBank Intelligent Data Loading into the Molecular Biodiversity Database.', BMC Bioinformatics. https://doi.org/10.1186/1471-2105-13-S4-S4","raw_type":"info:eu-repo/semantics/article"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s4-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s4-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S4-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"id":"https://metadata.un.org/sdg/9","score":0.5600000023841858,"display_name":"Industry, innovation and infrastructure"}],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2145264699.pdf","grobid_xml":"https://content.openalex.org/works/W2145264699.grobid-xml"},"referenced_works_count":25,"referenced_works":["https://openalex.org/W79144062","https://openalex.org/W80464232","https://openalex.org/W1568285589","https://openalex.org/W1700785270","https://openalex.org/W1835571316","https://openalex.org/W2035791470","https://openalex.org/W2075610412","https://openalex.org/W2078420731","https://openalex.org/W2096525273","https://openalex.org/W2112589398","https://openalex.org/W2113142309","https://openalex.org/W2114649195","https://openalex.org/W2117077912","https://openalex.org/W2117984499","https://openalex.org/W2120141270","https://openalex.org/W2123171788","https://openalex.org/W2125816119","https://openalex.org/W2151397621","https://openalex.org/W2161661053","https://openalex.org/W2168507922","https://openalex.org/W2171894968","https://openalex.org/W3121953277","https://openalex.org/W4230606671","https://openalex.org/W4241347156","https://openalex.org/W4244606935"],"related_works":["https://openalex.org/W1993070549","https://openalex.org/W4250169950","https://openalex.org/W1906885765","https://openalex.org/W4232951075","https://openalex.org/W4386946098","https://openalex.org/W4238968199","https://openalex.org/W4240231372","https://openalex.org/W4256072927","https://openalex.org/W4212865600","https://openalex.org/W4256333965"],"abstract_inverted_index":{"BACKGROUND:":[0],"In":[1,275],"the":[2,10,25,35,42,66,75,85,101,108,167,180,190,217,223,235,243,251,256,259,263,273,314,323,327,338],"scientific":[3],"biodiversity":[4,20,72,136],"community,":[5],"it":[6,142],"is":[7,57,132,143,156,179,201,229],"increasingly":[8],"perceived":[9],"need":[11],"to":[12,134,158,209,212,221,238,271,284],"build":[13],"a":[14,30,62,118,331],"bridge":[15],"between":[16],"molecular":[17,46],"and":[18,70,98,103,121,141,151,175,205,220,291,303,326],"traditional":[19],"studies.":[21],"We":[22],"believe":[23],"that":[24],"information":[26,36,137,215],"technology":[27],"could":[28],"have":[29,280,310],"preeminent":[31],"role":[32],"in":[33,51,94,107,145,162,216,287,313],"integrating":[34],"generated":[37],"by":[38,231,255,318],"these":[39],"studies":[40],"with":[41,84,337],"large":[43],"amount":[44],"of":[45,68,77,117,122,173,182,189,199,307],"data":[47,73,105,125,288],"we":[48],"can":[49],"find":[50],"bioinformatics":[52],"public":[53,69],"databases.":[54],"This":[55],"work":[56],"primarily":[58],"aimed":[59],"at":[60],"building":[61],"bioinformatic":[63],"infrastructure":[64],"for":[65],"integration":[67,290],"private":[71],"through":[74],"development":[76],"GIDL,":[78],"an":[79,95,123,159,183,202],"Intelligent":[80,194],"Data":[81,195],"Loader":[82,196],"coupled":[83],"Molecular":[86,224,315],"Biodiversity":[87,139,225,316],"Database.":[88,226],"The":[89,113,128,153,171,193,227],"system":[90],"presented":[91],"here":[92],"organizes":[93],"ontological":[96,184],"way":[97],"locally":[99],"stores":[100],"sequence":[102,342],"annotation":[104],"contained":[106],"GenBank":[109,218,240,308],"primary":[110],"database.":[111,274],"METHODS:":[112],"GIDL":[114,200,276],"architecture":[115],"consists":[116],"relational":[119,129,169],"database":[120,130],"intelligent":[124],"loader":[126],"software.":[127],"schema":[131,185],"designed":[133],"manage":[135],"(Molecular":[138],"Database)":[140],"organized":[144],"four":[146],"areas:":[147],"MolecularData,":[148],"Experiment,":[149],"Collection":[150],"Taxonomy.":[152],"MolecularData":[154],"area":[155],"inspired":[157],"established":[160],"standard":[161],"Generic":[163],"Model":[164],"Organism":[165],"Databases,":[166],"Chado":[168,328],"schema.":[170],"peculiarity":[172],"Chado,":[174],"also":[176],"its":[177],"strength,":[178],"adoption":[181],"which":[186,245,261],"makes":[187],"use":[188],"Sequence":[191,257,324],"Ontology.":[192],"(IDL)":[197],"component":[198],"Extract,":[203],"Transform":[204],"Load":[206],"software":[207],"able":[208,237],"parse":[210,239],"data,":[211],"discover":[213],"hidden":[214],"entries":[219],"populate":[222,272],"IDL":[228],"composed":[230],"three":[232],"main":[233],"modules:":[234],"Parser,":[236],"flat":[241],"files;":[242],"Reasoner,":[244],"automatically":[246],"builds":[247],"CLIPS":[248,264],"facts":[249,265],"mapping":[250],"biological":[252],"knowledge":[253],"expressed":[254],"Ontology;":[258],"DBFiller,":[260],"translates":[262],"into":[266],"ordered":[267],"SQL":[268],"statements":[269],"used":[270,341],"Semantic":[277],"Web":[278],"technologies":[279],"been":[281,311],"adopted":[282],"due":[283],"their":[285],"advantages":[286],"representation,":[289],"processing.":[292],"RESULTS":[293],"AND":[294],"CONCLUSIONS:":[295],"Entries":[296],"coming":[297],"from":[298],"Virus":[299],"(814,122),":[300],"Plant":[301],"(1,365,360)":[302],"Invertebrate":[304],"(959,065)":[305],"divisions":[306],"rel.180":[309],"loaded":[312],"Database":[317],"GIDL.":[319],"Our":[320],"system,":[321],"combining":[322],"Ontology":[325],"schema,":[329],"allows":[330],"more":[332],"powerful":[333],"query":[334],"expressiveness":[335],"compared":[336],"most":[339],"commonly":[340],"retrieval":[343],"systems":[344],"like":[345],"Entrez":[346],"or":[347],"SRS.":[348]},"counts_by_year":[{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":1},{"year":2015,"cited_by_count":2},{"year":2014,"cited_by_count":4},{"year":2012,"cited_by_count":3}],"updated_date":"2026-08-14T07:06:38.338062","created_date":"2025-10-10T00:00:00"}