{"id":"https://openalex.org/W2158332750","doi":"https://doi.org/10.1186/1471-2105-13-s17-s26","title":"Phylogenetic reconstruction in the Order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding","display_name":"Phylogenetic reconstruction in the Order Nymphaeales: ITS2 secondary structure analysis and in silico testing of maturase k (matK) as a potential marker for DNA bar coding","publication_year":2012,"publication_date":"2012-12-01","ids":{"openalex":"https://openalex.org/W2158332750","doi":"https://doi.org/10.1186/1471-2105-13-s17-s26","mag":"2158332750","pmid":"https://pubmed.ncbi.nlm.nih.gov/23282079"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s17-s26","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s17-s26","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S17-S26","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S17-S26","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":null,"display_name":"Devendra Kumar Biswal","orcid":null},"institutions":[{"id":"https://openalex.org/I197465736","display_name":"North Eastern Hill University","ror":"https://ror.org/055m2tx54","country_code":"IN","type":"education","lineage":["https://openalex.org/I197465736"]}],"countries":["IN"],"is_corresponding":true,"raw_author_name":"Devendra Kumar Biswal","raw_affiliation_strings":["Bioinformatics Centre, North Eastern Hill University, Shillong 793022, Meghalaya, India","Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, North Eastern Hill University, Shillong 793022, Meghalaya, India","institution_ids":["https://openalex.org/I197465736"]},{"raw_affiliation_string":"Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India","institution_ids":["https://openalex.org/I197465736"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064835420","display_name":"Manish Debnath","orcid":"https://orcid.org/0000-0001-8631-9028"},"institutions":[{"id":"https://openalex.org/I197465736","display_name":"North Eastern Hill University","ror":"https://ror.org/055m2tx54","country_code":"IN","type":"education","lineage":["https://openalex.org/I197465736"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Manish Debnath","raw_affiliation_strings":["Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India","institution_ids":["https://openalex.org/I197465736"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5101523227","display_name":"Shakti Kumar","orcid":"https://orcid.org/0000-0001-8194-2435"},"institutions":[{"id":"https://openalex.org/I197465736","display_name":"North Eastern Hill University","ror":"https://ror.org/055m2tx54","country_code":"IN","type":"education","lineage":["https://openalex.org/I197465736"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Shakti Kumar","raw_affiliation_strings":["Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India","institution_ids":["https://openalex.org/I197465736"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5110726117","display_name":"Pramod Tandon","orcid":null},"institutions":[{"id":"https://openalex.org/I197465736","display_name":"North Eastern Hill University","ror":"https://ror.org/055m2tx54","country_code":"IN","type":"education","lineage":["https://openalex.org/I197465736"]}],"countries":["IN"],"is_corresponding":false,"raw_author_name":"Pramod Tandon","raw_affiliation_strings":["Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Bioinformatics Centre, North Eastern Hill University, Shillong, 793022, Meghalaya, India","institution_ids":["https://openalex.org/I197465736"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":[],"corresponding_institution_ids":["https://openalex.org/I197465736"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":3.4842,"has_fulltext":true,"cited_by_count":25,"citation_normalized_percentile":{"value":0.92305528,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":90,"max":98},"biblio":{"volume":"13","issue":"S17","first_page":"S26","last_page":"S26"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T14310","display_name":"Botany and Geology in Latin America and Caribbean","score":0.7440999746322632,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T14310","display_name":"Botany and Geology in Latin America and Caribbean","score":0.7440999746322632,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.16210000216960907,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13015","display_name":"Botany, Ecology, and Taxonomy Studies","score":0.025699999183416367,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.8293178081512451},{"id":"https://openalex.org/keywords/monophyly","display_name":"Monophyly","score":0.6979894042015076},{"id":"https://openalex.org/keywords/clade","display_name":"Clade","score":0.44972705841064453},{"id":"https://openalex.org/keywords/ndhf","display_name":"NdhF","score":0.44607359170913696},{"id":"https://openalex.org/keywords/evolutionary-biology","display_name":"Evolutionary biology","score":0.4236387014389038},{"id":"https://openalex.org/keywords/botany","display_name":"Botany","score":0.41507968306541443},{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.3808545470237732},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.11077436804771423},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.04833662509918213}],"concepts":[{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.8293178081512451},{"id":"https://openalex.org/C12326286","wikidata":"https://www.wikidata.org/wiki/Q210958","display_name":"Monophyly","level":5,"score":0.6979894042015076},{"id":"https://openalex.org/C44465124","wikidata":"https://www.wikidata.org/wiki/Q713623","display_name":"Clade","level":4,"score":0.44972705841064453},{"id":"https://openalex.org/C2779141871","wikidata":"https://www.wikidata.org/wiki/Q24779283","display_name":"NdhF","level":5,"score":0.44607359170913696},{"id":"https://openalex.org/C78458016","wikidata":"https://www.wikidata.org/wiki/Q840400","display_name":"Evolutionary biology","level":1,"score":0.4236387014389038},{"id":"https://openalex.org/C59822182","wikidata":"https://www.wikidata.org/wiki/Q441","display_name":"Botany","level":1,"score":0.41507968306541443},{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.3808545470237732},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.11077436804771423},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.04833662509918213}],"mesh":[{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D001499","descriptor_name":"Bayes Theorem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D002736","descriptor_name":"Chloroplasts","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D003198","descriptor_name":"Computer Simulation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004722","descriptor_name":"Endoribonucleases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004722","descriptor_name":"Endoribonucleases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004722","descriptor_name":"Endoribonucleases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D004722","descriptor_name":"Endoribonucleases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004722","descriptor_name":"Endoribonucleases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D004722","descriptor_name":"Endoribonucleases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D005580","descriptor_name":"Fossils","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005580","descriptor_name":"Fossils","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005580","descriptor_name":"Fossils","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005819","descriptor_name":"Genetic Markers","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009690","descriptor_name":"Nucleic Acid Conformation","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009713","descriptor_name":"Nucleotidyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009713","descriptor_name":"Nucleotidyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009713","descriptor_name":"Nucleotidyltransferases","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D009713","descriptor_name":"Nucleotidyltransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009713","descriptor_name":"Nucleotidyltransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D009713","descriptor_name":"Nucleotidyltransferases","qualifier_ui":"Q000737","qualifier_name":"chemistry","is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016013","descriptor_name":"Likelihood Functions","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D016415","descriptor_name":"Sequence Alignment","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017433","descriptor_name":"Protein Structure, Secondary","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D018742","descriptor_name":"DNA, Chloroplast","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018742","descriptor_name":"DNA, Chloroplast","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018742","descriptor_name":"DNA, Chloroplast","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D018744","descriptor_name":"DNA, Plant","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021901","descriptor_name":"DNA, Intergenic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021901","descriptor_name":"DNA, Intergenic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D021901","descriptor_name":"DNA, Intergenic","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030702","descriptor_name":"Nymphaeaceae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030702","descriptor_name":"Nymphaeaceae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030702","descriptor_name":"Nymphaeaceae","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D030702","descriptor_name":"Nymphaeaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030702","descriptor_name":"Nymphaeaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D030702","descriptor_name":"Nymphaeaceae","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000379","qualifier_name":"methods","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false},{"descriptor_ui":"D058893","descriptor_name":"DNA Barcoding, Taxonomic","qualifier_ui":"Q000706","qualifier_name":"statistics & numerical data","is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-s17-s26","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s17-s26","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S17-S26","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23282079","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23282079","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:8f80695cc8164a4d90e68893b0a44da6","is_oa":false,"landing_page_url":"https://doaj.org/article/8f80695cc8164a4d90e68893b0a44da6","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss Suppl 17, p S26 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2521590","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3521246","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s17-s26","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s17-s26","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S17-S26","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[{"display_name":"Life in Land","score":0.6200000047683716,"id":"https://metadata.un.org/sdg/15"}],"awards":[],"funders":[{"id":"https://openalex.org/F4320310072","display_name":"North-Eastern Hill University","ror":"https://ror.org/055m2tx54"}],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2158332750.pdf","grobid_xml":"https://content.openalex.org/works/W2158332750.grobid-xml"},"referenced_works_count":61,"referenced_works":["https://openalex.org/W1512950721","https://openalex.org/W1525734744","https://openalex.org/W1543796220","https://openalex.org/W1579352620","https://openalex.org/W1589755459","https://openalex.org/W1667758322","https://openalex.org/W1935763178","https://openalex.org/W1966044150","https://openalex.org/W1975282045","https://openalex.org/W1977180944","https://openalex.org/W1985242071","https://openalex.org/W1991669894","https://openalex.org/W1996715232","https://openalex.org/W2005317724","https://openalex.org/W2015264962","https://openalex.org/W2023356179","https://openalex.org/W2030076750","https://openalex.org/W2039930928","https://openalex.org/W2043272074","https://openalex.org/W2047630272","https://openalex.org/W2055043387","https://openalex.org/W2055298722","https://openalex.org/W2057081312","https://openalex.org/W2059724298","https://openalex.org/W2067127913","https://openalex.org/W2073785087","https://openalex.org/W2079611888","https://openalex.org/W2082186061","https://openalex.org/W2086561953","https://openalex.org/W2094599118","https://openalex.org/W2098419476","https://openalex.org/W2101846955","https://openalex.org/W2104702173","https://openalex.org/W2106882534","https://openalex.org/W2107755341","https://openalex.org/W2108264366","https://openalex.org/W2110153693","https://openalex.org/W2111211467","https://openalex.org/W2112956791","https://openalex.org/W2121370091","https://openalex.org/W2125121305","https://openalex.org/W2131510173","https://openalex.org/W2134581361","https://openalex.org/W2139421741","https://openalex.org/W2143183702","https://openalex.org/W2145091349","https://openalex.org/W2146058063","https://openalex.org/W2157009395","https://openalex.org/W2161629629","https://openalex.org/W2164063710","https://openalex.org/W2235442146","https://openalex.org/W2326261401","https://openalex.org/W2463773922","https://openalex.org/W2611511275","https://openalex.org/W2733548038","https://openalex.org/W2796896989","https://openalex.org/W3020856028","https://openalex.org/W3183556138","https://openalex.org/W4230606671","https://openalex.org/W4244072335","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W2315933652","https://openalex.org/W2339862983","https://openalex.org/W2951822473","https://openalex.org/W2027319748","https://openalex.org/W4220722696","https://openalex.org/W4253704764","https://openalex.org/W4232399272","https://openalex.org/W2309368982","https://openalex.org/W3105107589","https://openalex.org/W3193653885"],"abstract_inverted_index":{"BACKGROUND:":[0],"The":[1,24,123,145,325],"Nymphaeales":[2,27,62,95],"(waterlilly":[3],"and":[4,16,22,28,48,77,99,112,115,127,134,179,205,218,224,257,292,306],"relatives)":[5],"lineage":[6,209],"has":[7],"diverged":[8],"as":[9,37,79,81,104,155,199,222,251],"the":[10,31,61,82,93,149,160,169,173,183,193,211,228,279,314,320,328],"second":[11],"branch":[12],"of":[13,18,26,72,92,117,151,172,186,244,266,294,303,317],"basal":[14,208],"angiosperms":[15,263],"comprises":[17],"two":[19],"families:":[20],"Cabombaceae":[21],"Nymphaceae.":[23],"classification":[25],"phylogeny":[29,107],"within":[30,319],"flowering":[32],"plants":[33],"are":[34,165,238],"quite":[35],"intriguing":[36],"several":[38],"systems":[39],"(Thorne":[40],"system,":[41,43,45],"Dahlgren":[42],"Cronquist":[44],"Takhtajan":[46],"system":[47,51],"APG":[49],"III":[50,55],"(Angiosperm":[52],"Phylogeny":[53],"Group":[54],"system)":[56],"have":[57,65,271],"attempted":[58],"to":[59,177,203,338],"redefine":[60],"taxonomy.":[63],"There":[64],"been":[66],"also":[67,258],"fossil":[68],"records":[69],"consisting":[70],"especially":[71],"seeds,":[73],"pollen,":[74],"stems,":[75],"leaves":[76],"flowers":[78],"early":[80],"lower":[83],"Cretaceous.":[84],"Here":[85],"we":[86],"present":[87],"an":[88],"in":[89,159,168,182,227,259,278],"silico":[90],"study":[91],"order":[94,323],"taking":[96],"maturaseK":[97],"(matK)":[98],"internal":[100],"transcribed":[101],"spacer":[102],"(ITS2)":[103],"biomarkers":[105,253],"for":[106,119,254,262,290],"reconstruction":[108,308],"(using":[109],"character-based":[110],"methods":[111],"Bayesian":[113,128],"approach)":[114],"identification":[116,265],"motifs":[118],"DNA":[120,247,255],"barcoding.":[121],"RESULTS:":[122],"Maximum":[124],"Likelihood":[125],"(ML)":[126],"approach":[129,302],"yielded":[130],"congruent":[131],"fully":[132,336],"resolved":[133,337],"well-supported":[135],"trees":[136],"using":[137,299,309],"a":[138,156,200,207,300],"concatenated":[139],"(ITS2+":[140],"matK)":[141],"supermatrix":[142],"aligned":[143],"dataset.":[144],"taxon":[146],"sampling":[147],"corroborates":[148],"monophyly":[150],"Cabombaceae.":[152],"Nuphar":[153],"emerges":[154],"monophyletic":[157,170],"clade":[158,202],"family":[161],"Nymphaeaceae":[162,204],"while":[163],"there":[164],"slight":[166],"discrepancies":[167],"nature":[171],"genera":[174],"Nymphaea":[175],"owing":[176],"Victoria-Euryale":[178],"Ondinea":[180],"grouping":[181],"same":[184],"node":[185],"Nymphaeaceae.":[187],"ITS2":[188],"secondary":[189],"structures":[190],"alignment":[191,305],"corroborate":[192],"primary":[194],"sequence":[195],"analysis.":[196],"Hydatellaceae":[197,318],"emerged":[198],"sister":[201],"had":[206],"amongst":[210],"water":[212],"lilly":[213],"clades.":[214],"Species":[215],"from":[216,232,282],"Cycas":[217],"Ginkgo":[219],"were":[220,225],"taken":[221],"outgroups":[223],"rooted":[226],"overall":[229],"tree":[230],"topology":[231],"various":[233],"methods.":[234],"CONCLUSIONS:":[235],"MatK":[236],"genes":[237],"fast":[239],"evolving":[240],"highly":[241],"variant":[242],"regions":[243,277],"plant":[245],"chloroplast":[246],"that":[248,330],"can":[249,286],"serve":[250],"potential":[252],"barcoding":[256,291],"generating":[260],"primers":[261],"with":[264,313],"unique":[267,273],"motif":[268,276],"regions.":[269],"We":[270],"reported":[272],"genus":[274],"specific":[275],"Order":[280],"Nymphaeles":[281],"matK":[283],"dataset":[284],"which":[285],"be":[287,339,342],"further":[288],"validated":[289],"designing":[293],"PCR":[295],"primers.":[296],"Our":[297],"analysis":[298],"novel":[301],"sequence-structure":[304],"phylogenetic":[307],"molecular":[310],"morphometrics":[311],"congrue":[312],"current":[315],"placement":[316],"early-divergent":[321],"angiosperm":[322],"Nymphaeales.":[324],"results":[326],"underscore":[327],"fact":[329],"more":[331],"diverse":[332],"genera,":[333],"if":[334],"not":[335],"monophyletic,":[340],"should":[341],"represented":[343],"by":[344],"all":[345],"major":[346],"lineages.":[347]},"counts_by_year":[{"year":2025,"cited_by_count":1},{"year":2024,"cited_by_count":1},{"year":2022,"cited_by_count":4},{"year":2019,"cited_by_count":3},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":3},{"year":2016,"cited_by_count":3},{"year":2014,"cited_by_count":4},{"year":2013,"cited_by_count":1},{"year":2012,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}