{"id":"https://openalex.org/W2103143220","doi":"https://doi.org/10.1186/1471-2105-13-s13-s8","title":"Phylogenetic search through partial tree mixing","display_name":"Phylogenetic search through partial tree mixing","publication_year":2012,"publication_date":"2012-08-01","ids":{"openalex":"https://openalex.org/W2103143220","doi":"https://doi.org/10.1186/1471-2105-13-s13-s8","mag":"2103143220","pmid":"https://pubmed.ncbi.nlm.nih.gov/23320449"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s13-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s13-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S13-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S13-S8","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5016252581","display_name":"Kenneth Sundberg","orcid":null},"institutions":[{"id":"https://openalex.org/I121980950","display_name":"Utah State University","ror":"https://ror.org/00h6set76","country_code":"US","type":"education","lineage":["https://openalex.org/I121980950"]},{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Kenneth Sundberg","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT 84602, USA","Department of Computer Science, Utah State University, Logan, USA"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT 84602, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Computer Science, Utah State University, Logan, USA","institution_ids":["https://openalex.org/I121980950"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5058435710","display_name":"Mark Clement","orcid":"https://orcid.org/0000-0003-4902-3521"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Mark Clement","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","Department of Computer Science, Brigham Young University, Provo, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, USA#TAB#","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064637082","display_name":"Quinn Snell","orcid":"https://orcid.org/0000-0002-0579-612X"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Quinn Snell","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","Department of Computer Science, Brigham Young University, Provo, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, USA#TAB#","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5064318273","display_name":"Dan Ventura","orcid":"https://orcid.org/0000-0002-3111-2238"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Dan Ventura","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","Department of Computer Science, Brigham Young University, Provo, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, USA#TAB#","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5029704013","display_name":"Michael F. Whiting","orcid":"https://orcid.org/0000-0003-1157-888X"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Michael Whiting","raw_affiliation_strings":["Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","Department of Computer Science, Brigham Young University, Provo, USA#TAB#"],"affiliations":[{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, UT, 84602, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Computer Science, Brigham Young University, Provo, USA#TAB#","institution_ids":["https://openalex.org/I100005738"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5046615539","display_name":"Keith A. Crandall","orcid":"https://orcid.org/0000-0002-0836-3389"},"institutions":[{"id":"https://openalex.org/I100005738","display_name":"Brigham Young University","ror":"https://ror.org/047rhhm47","country_code":"US","type":"education","lineage":["https://openalex.org/I100005738"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Keith Crandall","raw_affiliation_strings":["Department of Biology, Brigham Young University, Provo, UT, 84602, USA","Department of Biology, Brigham Young University, Provo, USA"],"affiliations":[{"raw_affiliation_string":"Department of Biology, Brigham Young University, Provo, UT, 84602, USA","institution_ids":["https://openalex.org/I100005738"]},{"raw_affiliation_string":"Department of Biology, Brigham Young University, Provo, USA","institution_ids":["https://openalex.org/I100005738"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":6,"corresponding_author_ids":["https://openalex.org/A5016252581"],"corresponding_institution_ids":["https://openalex.org/I100005738","https://openalex.org/I121980950"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.2681,"has_fulltext":true,"cited_by_count":3,"citation_normalized_percentile":{"value":0.58730788,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":"S13","first_page":"S8","last_page":"S8"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10015","display_name":"Genomics and Phylogenetic Studies","score":0.9998000264167786,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T14049","display_name":"Plant and Fungal Species Descriptions","score":0.9958000183105469,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10385","display_name":"Plant Diversity and Evolution","score":0.9952999949455261,"subfield":{"id":"https://openalex.org/subfields/1105","display_name":"Ecology, Evolution, Behavior and Systematics"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/phylogenetic-tree","display_name":"Phylogenetic tree","score":0.8860504627227783},{"id":"https://openalex.org/keywords/tree-rearrangement","display_name":"Tree rearrangement","score":0.670598566532135},{"id":"https://openalex.org/keywords/tree","display_name":"Tree (set theory)","score":0.6659927368164062},{"id":"https://openalex.org/keywords/phylogenetic-network","display_name":"Phylogenetic network","score":0.5833600759506226},{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.5774972438812256},{"id":"https://openalex.org/keywords/partition","display_name":"Partition (number theory)","score":0.5034896731376648},{"id":"https://openalex.org/keywords/inference","display_name":"Inference","score":0.4717840850353241},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.45577430725097656},{"id":"https://openalex.org/keywords/tree-traversal","display_name":"Tree traversal","score":0.44077837467193604},{"id":"https://openalex.org/keywords/search-tree","display_name":"Search tree","score":0.4402504563331604},{"id":"https://openalex.org/keywords/theoretical-computer-science","display_name":"Theoretical computer science","score":0.3511087894439697},{"id":"https://openalex.org/keywords/algorithm","display_name":"Algorithm","score":0.2884986400604248},{"id":"https://openalex.org/keywords/search-algorithm","display_name":"Search algorithm","score":0.2856108546257019},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.27130335569381714},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.24136993288993835},{"id":"https://openalex.org/keywords/mathematics","display_name":"Mathematics","score":0.24062508344650269},{"id":"https://openalex.org/keywords/combinatorics","display_name":"Combinatorics","score":0.11391288042068481},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.06982585787773132}],"concepts":[{"id":"https://openalex.org/C193252679","wikidata":"https://www.wikidata.org/wiki/Q242125","display_name":"Phylogenetic tree","level":3,"score":0.8860504627227783},{"id":"https://openalex.org/C53208351","wikidata":"https://www.wikidata.org/wiki/Q7837630","display_name":"Tree rearrangement","level":4,"score":0.670598566532135},{"id":"https://openalex.org/C113174947","wikidata":"https://www.wikidata.org/wiki/Q2859736","display_name":"Tree (set theory)","level":2,"score":0.6659927368164062},{"id":"https://openalex.org/C26619641","wikidata":"https://www.wikidata.org/wiki/Q3142246","display_name":"Phylogenetic network","level":4,"score":0.5833600759506226},{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.5774972438812256},{"id":"https://openalex.org/C42812","wikidata":"https://www.wikidata.org/wiki/Q1082910","display_name":"Partition (number theory)","level":2,"score":0.5034896731376648},{"id":"https://openalex.org/C2776214188","wikidata":"https://www.wikidata.org/wiki/Q408386","display_name":"Inference","level":2,"score":0.4717840850353241},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.45577430725097656},{"id":"https://openalex.org/C140745168","wikidata":"https://www.wikidata.org/wiki/Q1210082","display_name":"Tree traversal","level":2,"score":0.44077837467193604},{"id":"https://openalex.org/C207024777","wikidata":"https://www.wikidata.org/wiki/Q621673","display_name":"Search tree","level":3,"score":0.4402504563331604},{"id":"https://openalex.org/C80444323","wikidata":"https://www.wikidata.org/wiki/Q2878974","display_name":"Theoretical computer science","level":1,"score":0.3511087894439697},{"id":"https://openalex.org/C11413529","wikidata":"https://www.wikidata.org/wiki/Q8366","display_name":"Algorithm","level":1,"score":0.2884986400604248},{"id":"https://openalex.org/C125583679","wikidata":"https://www.wikidata.org/wiki/Q755673","display_name":"Search algorithm","level":2,"score":0.2856108546257019},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.27130335569381714},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.24136993288993835},{"id":"https://openalex.org/C33923547","wikidata":"https://www.wikidata.org/wiki/Q395","display_name":"Mathematics","level":0,"score":0.24062508344650269},{"id":"https://openalex.org/C114614502","wikidata":"https://www.wikidata.org/wiki/Q76592","display_name":"Combinatorics","level":1,"score":0.11391288042068481},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.06982585787773132},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.0}],"mesh":[{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D000465","descriptor_name":"Algorithms","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D010802","descriptor_name":"Phylogeny","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D012984","descriptor_name":"Software","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":4,"locations":[{"id":"doi:10.1186/1471-2105-13-s13-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s13-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S13-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:23320449","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/23320449","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:doaj.org/article:f746ab7d45164606bd081b0050da4bac","is_oa":true,"landing_page_url":"https://doaj.org/article/f746ab7d45164606bd081b0050da4bac","pdf_url":null,"source":{"id":"https://openalex.org/S112646816","display_name":"SHILAP Revista de lepidopterolog\u00eda","issn_l":"0300-5267","issn":["0300-5267","2340-4078"],"is_oa":true,"is_in_doaj":true,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"journal"},"license":null,"license_id":null,"version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss Suppl 13, p S8 (2012)","raw_type":"article"},{"id":"pmh:oai:pubmedcentral.nih.gov:3426809","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3426809","pdf_url":null,"source":{"id":"https://openalex.org/S2764455111","display_name":"PubMed Central","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics","raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s13-s8","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s13-s8","pdf_url":"https://bmcbioinformatics.biomedcentral.com/track/pdf/10.1186/1471-2105-13-S13-S8","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"grobid_xml":true,"pdf":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2103143220.pdf","grobid_xml":"https://content.openalex.org/works/W2103143220.grobid-xml"},"referenced_works_count":21,"referenced_works":["https://openalex.org/W145297760","https://openalex.org/W1498708571","https://openalex.org/W1540802038","https://openalex.org/W1600463518","https://openalex.org/W2007358765","https://openalex.org/W2041397659","https://openalex.org/W2041797002","https://openalex.org/W2044789562","https://openalex.org/W2060425093","https://openalex.org/W2068117230","https://openalex.org/W2097706568","https://openalex.org/W2106179083","https://openalex.org/W2126763909","https://openalex.org/W2129838374","https://openalex.org/W2144221002","https://openalex.org/W2151692850","https://openalex.org/W2325972454","https://openalex.org/W2561961415","https://openalex.org/W4200283578","https://openalex.org/W4238823463","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W85430217","https://openalex.org/W2607237371","https://openalex.org/W2800044728","https://openalex.org/W3088015816","https://openalex.org/W2252576209","https://openalex.org/W4287661213","https://openalex.org/W2110570734","https://openalex.org/W3106839334","https://openalex.org/W4205904230","https://openalex.org/W2791652447"],"abstract_inverted_index":{"The":[0],"use":[1],"of":[2],"Partial":[3],"Tree":[4],"Mixing":[5],"in":[6,29],"a":[7,30],"partition":[8],"based":[9],"tree":[10,21],"space":[11],"allows":[12],"the":[13,35],"algorithm":[14],"to":[15,33],"quickly":[16],"converge":[17],"on":[18],"near":[19],"optimal":[20,37],"regions.":[22],"These":[23],"regions":[24],"can":[25],"then":[26],"be":[27],"searched":[28],"methodical":[31],"way":[32],"determine":[34],"overall":[36],"phylogenetic":[38],"solution.":[39]},"counts_by_year":[{"year":2017,"cited_by_count":1},{"year":2014,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-03-18T14:38:29.013473","created_date":"2025-10-10T00:00:00"}
