{"id":"https://openalex.org/W2141878172","doi":"https://doi.org/10.1186/1471-2105-13-s12-a2","title":"Comprehensive characterization of an individual\u2019s LINE-1 insertion profile using next generation sequencing data","display_name":"Comprehensive characterization of an individual\u2019s LINE-1 insertion profile using next generation sequencing data","publication_year":2012,"publication_date":"2012-07-01","ids":{"openalex":"https://openalex.org/W2141878172","doi":"https://doi.org/10.1186/1471-2105-13-s12-a2","mag":"2141878172"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s12-a2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s12-a2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S12-A2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S12-A2","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5074145871","display_name":"A. F. Kemper","orcid":"https://orcid.org/0000-0002-5426-5181"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":true,"raw_author_name":"Alexander Kemper","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, KY, 40292, USA","Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5043770089","display_name":"Musa Hindi","orcid":null},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Musa Hindi","raw_affiliation_strings":["Department of Computer Engineering and Computer Science, University of Louisville, Louisville, KY, 40292, USA","Department of Computer Engineering and Computer Science, University of Louisville, Louisville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Computer Engineering and Computer Science, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Computer Engineering and Computer Science, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5052485917","display_name":"Kenneth S. Ramos","orcid":"https://orcid.org/0000-0002-0692-4066"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Kenneth S Ramos","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, KY, 40292, USA","Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5051723827","display_name":"Ted Kalbfleisch","orcid":"https://orcid.org/0000-0002-2370-8189"},"institutions":[{"id":"https://openalex.org/I142740786","display_name":"University of Louisville","ror":"https://ror.org/01ckdn478","country_code":"US","type":"education","lineage":["https://openalex.org/I142740786"]}],"countries":["US"],"is_corresponding":false,"raw_author_name":"Theodore S Kalbfleisch","raw_affiliation_strings":["Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, KY, 40292, USA","Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, USA"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, KY, 40292, USA","institution_ids":["https://openalex.org/I142740786"]},{"raw_affiliation_string":"Department of Biochemistry and Molecular Biology, University of Louisville, Louisville, USA","institution_ids":["https://openalex.org/I142740786"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":4,"corresponding_author_ids":["https://openalex.org/A5074145871"],"corresponding_institution_ids":["https://openalex.org/I142740786"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":0.4039,"has_fulltext":true,"cited_by_count":4,"citation_normalized_percentile":{"value":0.73381925,"is_in_top_1_percent":false,"is_in_top_10_percent":false},"cited_by_percentile_year":{"min":89,"max":94},"biblio":{"volume":"13","issue":"S12","first_page":null,"last_page":null},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T10434","display_name":"Chromosomal and Genetic Variations","score":0.9979000091552734,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10725","display_name":"RNA Interference and Gene Delivery","score":0.9836000204086304,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T10494","display_name":"Plant Virus Research Studies","score":0.9824000000953674,"subfield":{"id":"https://openalex.org/subfields/1110","display_name":"Plant Science"},"field":{"id":"https://openalex.org/fields/11","display_name":"Agricultural and Biological Sciences"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/retrotransposon","display_name":"Retrotransposon","score":0.8803967237472534},{"id":"https://openalex.org/keywords/germline","display_name":"Germline","score":0.7231357097625732},{"id":"https://openalex.org/keywords/biology","display_name":"Biology","score":0.7200865149497986},{"id":"https://openalex.org/keywords/genetics","display_name":"Genetics","score":0.7072939276695251},{"id":"https://openalex.org/keywords/phenotype","display_name":"Phenotype","score":0.6970813870429993},{"id":"https://openalex.org/keywords/genotype","display_name":"Genotype","score":0.6260190010070801},{"id":"https://openalex.org/keywords/insertion-sequence","display_name":"Insertion sequence","score":0.589358925819397},{"id":"https://openalex.org/keywords/somatic-cell","display_name":"Somatic cell","score":0.5573955178260803},{"id":"https://openalex.org/keywords/insertion","display_name":"Insertion","score":0.555547297000885},{"id":"https://openalex.org/keywords/loss-function","display_name":"Loss function","score":0.5044091939926147},{"id":"https://openalex.org/keywords/genotype-phenotype-distinction","display_name":"Genotype-phenotype distinction","score":0.49782824516296387},{"id":"https://openalex.org/keywords/gene","display_name":"Gene","score":0.4510740637779236},{"id":"https://openalex.org/keywords/mobile-genetic-elements","display_name":"Mobile genetic elements","score":0.4256994426250458},{"id":"https://openalex.org/keywords/transposable-element","display_name":"Transposable element","score":0.40394866466522217},{"id":"https://openalex.org/keywords/computational-biology","display_name":"Computational biology","score":0.37340444326400757},{"id":"https://openalex.org/keywords/mutation","display_name":"Mutation","score":0.33525246381759644},{"id":"https://openalex.org/keywords/genome","display_name":"Genome","score":0.1866355836391449}],"concepts":[{"id":"https://openalex.org/C7029365","wikidata":"https://www.wikidata.org/wiki/Q413988","display_name":"Retrotransposon","level":5,"score":0.8803967237472534},{"id":"https://openalex.org/C109825262","wikidata":"https://www.wikidata.org/wiki/Q1139164","display_name":"Germline","level":3,"score":0.7231357097625732},{"id":"https://openalex.org/C86803240","wikidata":"https://www.wikidata.org/wiki/Q420","display_name":"Biology","level":0,"score":0.7200865149497986},{"id":"https://openalex.org/C54355233","wikidata":"https://www.wikidata.org/wiki/Q7162","display_name":"Genetics","level":1,"score":0.7072939276695251},{"id":"https://openalex.org/C127716648","wikidata":"https://www.wikidata.org/wiki/Q104053","display_name":"Phenotype","level":3,"score":0.6970813870429993},{"id":"https://openalex.org/C135763542","wikidata":"https://www.wikidata.org/wiki/Q106016","display_name":"Genotype","level":3,"score":0.6260190010070801},{"id":"https://openalex.org/C157887575","wikidata":"https://www.wikidata.org/wiki/Q417216","display_name":"Insertion sequence","level":5,"score":0.589358925819397},{"id":"https://openalex.org/C134305767","wikidata":"https://www.wikidata.org/wiki/Q725508","display_name":"Somatic cell","level":3,"score":0.5573955178260803},{"id":"https://openalex.org/C118083812","wikidata":"https://www.wikidata.org/wiki/Q1650834","display_name":"Insertion","level":4,"score":0.555547297000885},{"id":"https://openalex.org/C105951970","wikidata":"https://www.wikidata.org/wiki/Q1036748","display_name":"Loss function","level":4,"score":0.5044091939926147},{"id":"https://openalex.org/C200844832","wikidata":"https://www.wikidata.org/wiki/Q5533517","display_name":"Genotype-phenotype distinction","level":4,"score":0.49782824516296387},{"id":"https://openalex.org/C104317684","wikidata":"https://www.wikidata.org/wiki/Q7187","display_name":"Gene","level":2,"score":0.4510740637779236},{"id":"https://openalex.org/C132533263","wikidata":"https://www.wikidata.org/wiki/Q2347362","display_name":"Mobile genetic elements","level":4,"score":0.4256994426250458},{"id":"https://openalex.org/C4918238","wikidata":"https://www.wikidata.org/wiki/Q121438","display_name":"Transposable element","level":4,"score":0.40394866466522217},{"id":"https://openalex.org/C70721500","wikidata":"https://www.wikidata.org/wiki/Q177005","display_name":"Computational biology","level":1,"score":0.37340444326400757},{"id":"https://openalex.org/C501734568","wikidata":"https://www.wikidata.org/wiki/Q42918","display_name":"Mutation","level":3,"score":0.33525246381759644},{"id":"https://openalex.org/C141231307","wikidata":"https://www.wikidata.org/wiki/Q7020","display_name":"Genome","level":3,"score":0.1866355836391449}],"mesh":[],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-13-s12-a2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s12-a2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S12-A2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmh:oai:doaj.org/article:b9c4896ef28544dda02c4399531468bd","is_oa":true,"landing_page_url":"https://doaj.org/article/b9c4896ef28544dda02c4399531468bd","pdf_url":null,"source":{"id":"https://openalex.org/S4306401280","display_name":"DOAJ (DOAJ: Directory of Open Access Journals)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":null,"host_organization_name":null,"host_organization_lineage":[],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by-sa","license_id":"https://openalex.org/licenses/cc-by-sa","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":"BMC Bioinformatics, Vol 13, Iss Suppl 12, p A2 (2012)","raw_type":"article"},{"id":"pmh:oai:europepmc.org:2418942","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3409061","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s12-a2","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s12-a2","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S12-A2","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2141878172.pdf","grobid_xml":"https://content.openalex.org/works/W2141878172.grobid-xml"},"referenced_works_count":0,"referenced_works":[],"related_works":["https://openalex.org/W2366926300","https://openalex.org/W1995898734","https://openalex.org/W1976565041","https://openalex.org/W2913260402","https://openalex.org/W3153623757","https://openalex.org/W2989864954","https://openalex.org/W2952429017","https://openalex.org/W4206800375","https://openalex.org/W2005663793","https://openalex.org/W2066478438"],"abstract_inverted_index":{"DOAJ":[0],"is":[1,26],"a":[2,18],"unique":[3],"and":[4],"extensive":[5],"index":[6],"of":[7],"diverse":[8],"open":[9],"access":[10],"journals":[11],"from":[12],"around":[13],"the":[14],"world,":[15],"driven":[16],"by":[17],"growing":[19],"community,":[20],"committed":[21],"to":[22],"ensuring":[23],"quality":[24],"content":[25],"freely":[27],"available":[28],"online":[29],"for":[30],"everyone.":[31]},"counts_by_year":[{"year":2020,"cited_by_count":1},{"year":2018,"cited_by_count":1},{"year":2017,"cited_by_count":1},{"year":2013,"cited_by_count":1}],"updated_date":"2026-05-06T08:25:59.206177","created_date":"2025-10-10T00:00:00"}