{"id":"https://openalex.org/W2108791029","doi":"https://doi.org/10.1186/1471-2105-13-s11-s4","title":"University of Turku in the BioNLP'11 Shared Task","display_name":"University of Turku in the BioNLP'11 Shared Task","publication_year":2012,"publication_date":"2012-06-01","ids":{"openalex":"https://openalex.org/W2108791029","doi":"https://doi.org/10.1186/1471-2105-13-s11-s4","mag":"2108791029","pmid":"https://pubmed.ncbi.nlm.nih.gov/22759458"},"language":"en","primary_location":{"id":"doi:10.1186/1471-2105-13-s11-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s11-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"type":"article","indexed_in":["crossref","doaj","pubmed"],"open_access":{"is_oa":true,"oa_status":"gold","oa_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S4","any_repository_has_fulltext":true},"authorships":[{"author_position":"first","author":{"id":"https://openalex.org/A5049143500","display_name":"Jari Bj\u00f6rne","orcid":"https://orcid.org/0000-0003-1722-6404"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":true,"raw_author_name":"Jari Bj\u00f6rne","raw_affiliation_strings":["Department of Information Technology, University of Turku, Turku Centre for Computer Science (TUCS), Joukahaisenkatu 3-5, 20520 Turku, Finland. jari.bjorne@utu.fi","Department of Information Technology, University of Turku/Turku Centre for Computer Science (TUCS), Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology, University of Turku, Turku Centre for Computer Science (TUCS), Joukahaisenkatu 3-5, 20520 Turku, Finland. jari.bjorne@utu.fi","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I155660961"]},{"raw_affiliation_string":"Department of Information Technology, University of Turku/Turku Centre for Computer Science (TUCS), Turku, Finland","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I155660961"]}]},{"author_position":"middle","author":{"id":"https://openalex.org/A5019929457","display_name":"Filip Ginter","orcid":"https://orcid.org/0000-0002-5484-6103"},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Filip Ginter","raw_affiliation_strings":["Department of Information Technology, University of Turku, Turku Centre for Computer Science (TUCS), Joukahaisenkatu 3-5, 20520, Turku, Finland","Department of Information Technology, University of Turku/Turku Centre for Computer Science (TUCS), Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology, University of Turku, Turku Centre for Computer Science (TUCS), Joukahaisenkatu 3-5, 20520, Turku, Finland","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"Department of Information Technology, University of Turku/Turku Centre for Computer Science (TUCS), Turku, Finland","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I155660961"]}]},{"author_position":"last","author":{"id":"https://openalex.org/A5105839982","display_name":"Tapio Salakoski","orcid":null},"institutions":[{"id":"https://openalex.org/I155660961","display_name":"University of Turku","ror":"https://ror.org/05vghhr25","country_code":"FI","type":"education","lineage":["https://openalex.org/I155660961"]},{"id":"https://openalex.org/I183173800","display_name":"Turku Centre for Computer Science","ror":"https://ror.org/00vy7ed73","country_code":"FI","type":"facility","lineage":["https://openalex.org/I130217899","https://openalex.org/I155660961","https://openalex.org/I183173800"]}],"countries":["FI"],"is_corresponding":false,"raw_author_name":"Tapio Salakoski","raw_affiliation_strings":["Department of Information Technology, University of Turku, Turku Centre for Computer Science (TUCS), Joukahaisenkatu 3-5, 20520, Turku, Finland","Department of Information Technology, University of Turku/Turku Centre for Computer Science (TUCS), Turku, Finland"],"raw_orcid":null,"affiliations":[{"raw_affiliation_string":"Department of Information Technology, University of Turku, Turku Centre for Computer Science (TUCS), Joukahaisenkatu 3-5, 20520, Turku, Finland","institution_ids":["https://openalex.org/I183173800"]},{"raw_affiliation_string":"Department of Information Technology, University of Turku/Turku Centre for Computer Science (TUCS), Turku, Finland","institution_ids":["https://openalex.org/I183173800","https://openalex.org/I155660961"]}]}],"institutions":[],"countries_distinct_count":1,"institutions_distinct_count":2,"corresponding_author_ids":["https://openalex.org/A5049143500"],"corresponding_institution_ids":["https://openalex.org/I155660961","https://openalex.org/I183173800"],"apc_list":{"value":1690,"currency":"GBP","value_usd":2072},"apc_paid":{"value":1690,"currency":"GBP","value_usd":2072},"fwci":4.8995,"has_fulltext":true,"cited_by_count":67,"citation_normalized_percentile":{"value":0.96193931,"is_in_top_1_percent":false,"is_in_top_10_percent":true},"cited_by_percentile_year":{"min":89,"max":100},"biblio":{"volume":"13","issue":"S11","first_page":"S4","last_page":"S4"},"is_retracted":false,"is_paratext":false,"is_xpac":false,"primary_topic":{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},"topics":[{"id":"https://openalex.org/T11710","display_name":"Biomedical Text Mining and Ontologies","score":0.9854000210762024,"subfield":{"id":"https://openalex.org/subfields/1312","display_name":"Molecular Biology"},"field":{"id":"https://openalex.org/fields/13","display_name":"Biochemistry, Genetics and Molecular Biology"},"domain":{"id":"https://openalex.org/domains/1","display_name":"Life Sciences"}},{"id":"https://openalex.org/T13083","display_name":"Advanced Text Analysis Techniques","score":0.002899999963119626,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}},{"id":"https://openalex.org/T10028","display_name":"Topic Modeling","score":0.002199999988079071,"subfield":{"id":"https://openalex.org/subfields/1702","display_name":"Artificial Intelligence"},"field":{"id":"https://openalex.org/fields/17","display_name":"Computer Science"},"domain":{"id":"https://openalex.org/domains/3","display_name":"Physical Sciences"}}],"keywords":[{"id":"https://openalex.org/keywords/computer-science","display_name":"Computer science","score":0.8833813071250916},{"id":"https://openalex.org/keywords/biomedical-text-mining","display_name":"Biomedical text mining","score":0.7954559922218323},{"id":"https://openalex.org/keywords/task","display_name":"Task (project management)","score":0.7102571129798889},{"id":"https://openalex.org/keywords/event","display_name":"Event (particle physics)","score":0.7064408659934998},{"id":"https://openalex.org/keywords/scope","display_name":"Scope (computer science)","score":0.4324226379394531},{"id":"https://openalex.org/keywords/artificial-intelligence","display_name":"Artificial intelligence","score":0.41237324476242065},{"id":"https://openalex.org/keywords/machine-learning","display_name":"Machine learning","score":0.39660531282424927},{"id":"https://openalex.org/keywords/data-mining","display_name":"Data mining","score":0.3415115177631378},{"id":"https://openalex.org/keywords/text-mining","display_name":"Text mining","score":0.16055235266685486}],"concepts":[{"id":"https://openalex.org/C41008148","wikidata":"https://www.wikidata.org/wiki/Q21198","display_name":"Computer science","level":0,"score":0.8833813071250916},{"id":"https://openalex.org/C165141518","wikidata":"https://www.wikidata.org/wiki/Q4915126","display_name":"Biomedical text mining","level":3,"score":0.7954559922218323},{"id":"https://openalex.org/C2780451532","wikidata":"https://www.wikidata.org/wiki/Q759676","display_name":"Task (project management)","level":2,"score":0.7102571129798889},{"id":"https://openalex.org/C2779662365","wikidata":"https://www.wikidata.org/wiki/Q5416694","display_name":"Event (particle physics)","level":2,"score":0.7064408659934998},{"id":"https://openalex.org/C2778012447","wikidata":"https://www.wikidata.org/wiki/Q1034415","display_name":"Scope (computer science)","level":2,"score":0.4324226379394531},{"id":"https://openalex.org/C154945302","wikidata":"https://www.wikidata.org/wiki/Q11660","display_name":"Artificial intelligence","level":1,"score":0.41237324476242065},{"id":"https://openalex.org/C119857082","wikidata":"https://www.wikidata.org/wiki/Q2539","display_name":"Machine learning","level":1,"score":0.39660531282424927},{"id":"https://openalex.org/C124101348","wikidata":"https://www.wikidata.org/wiki/Q172491","display_name":"Data mining","level":1,"score":0.3415115177631378},{"id":"https://openalex.org/C71472368","wikidata":"https://www.wikidata.org/wiki/Q676880","display_name":"Text mining","level":2,"score":0.16055235266685486},{"id":"https://openalex.org/C121332964","wikidata":"https://www.wikidata.org/wiki/Q413","display_name":"Physics","level":0,"score":0.0},{"id":"https://openalex.org/C199360897","wikidata":"https://www.wikidata.org/wiki/Q9143","display_name":"Programming language","level":1,"score":0.0},{"id":"https://openalex.org/C162324750","wikidata":"https://www.wikidata.org/wiki/Q8134","display_name":"Economics","level":0,"score":0.0},{"id":"https://openalex.org/C62520636","wikidata":"https://www.wikidata.org/wiki/Q944","display_name":"Quantum mechanics","level":1,"score":0.0},{"id":"https://openalex.org/C187736073","wikidata":"https://www.wikidata.org/wiki/Q2920921","display_name":"Management","level":1,"score":0.0}],"mesh":[{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001185","descriptor_name":"Artificial Intelligence","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000145","qualifier_name":"classification","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D001419","descriptor_name":"Bacteria","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D003141","descriptor_name":"Communicable Diseases","qualifier_ui":"Q000378","qualifier_name":"metabolism","is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D004843","descriptor_name":"Epistasis, Genetic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D005798","descriptor_name":"Genes, Bacterial","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D006801","descriptor_name":"Humans","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009323","descriptor_name":"Natural Language Processing","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D009626","descriptor_name":"Terminology as Topic","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011499","descriptor_name":"Protein Processing, Post-Translational","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D011506","descriptor_name":"Proteins","qualifier_ui":"Q000235","qualifier_name":"genetics","is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D017753","descriptor_name":"Ecosystem","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057225","descriptor_name":"Data Mining","qualifier_ui":null,"qualifier_name":null,"is_major_topic":true},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D057890","descriptor_name":"Epigenomics","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false},{"descriptor_ui":"D060388","descriptor_name":"Support Vector Machine","qualifier_ui":null,"qualifier_name":null,"is_major_topic":false}],"locations_count":3,"locations":[{"id":"doi:10.1186/1471-2105-13-s11-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s11-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},{"id":"pmid:22759458","is_oa":false,"landing_page_url":"https://pubmed.ncbi.nlm.nih.gov/22759458","pdf_url":null,"source":{"id":"https://openalex.org/S4306525036","display_name":"PubMed","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1299303238","host_organization_name":"National Institutes of Health","host_organization_lineage":["https://openalex.org/I1299303238"],"host_organization_lineage_names":[],"type":"repository"},"license":null,"license_id":null,"version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC bioinformatics","raw_type":null},{"id":"pmh:oai:europepmc.org:2387587","is_oa":true,"landing_page_url":"https://www.ncbi.nlm.nih.gov/pmc/articles/3384251","pdf_url":null,"source":{"id":"https://openalex.org/S4306400806","display_name":"Europe PMC (PubMed Central)","issn_l":null,"issn":null,"is_oa":false,"is_in_doaj":false,"is_core":false,"host_organization":"https://openalex.org/I1303153112","host_organization_name":"European Bioinformatics Institute","host_organization_lineage":["https://openalex.org/I1303153112"],"host_organization_lineage_names":[],"type":"repository"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"submittedVersion","is_accepted":false,"is_published":false,"raw_source_name":null,"raw_type":"Text"}],"best_oa_location":{"id":"doi:10.1186/1471-2105-13-s11-s4","is_oa":true,"landing_page_url":"https://doi.org/10.1186/1471-2105-13-s11-s4","pdf_url":"https://bmcbioinformatics.biomedcentral.com/counter/pdf/10.1186/1471-2105-13-S11-S4","source":{"id":"https://openalex.org/S19032547","display_name":"BMC Bioinformatics","issn_l":"1471-2105","issn":["1471-2105"],"is_oa":true,"is_in_doaj":true,"is_core":true,"host_organization":"https://openalex.org/P4310320256","host_organization_name":"BioMed Central","host_organization_lineage":["https://openalex.org/P4310320256","https://openalex.org/P4310319965"],"host_organization_lineage_names":["BioMed Central","Springer Nature"],"type":"journal"},"license":"cc-by","license_id":"https://openalex.org/licenses/cc-by","version":"publishedVersion","is_accepted":true,"is_published":true,"raw_source_name":"BMC Bioinformatics","raw_type":"journal-article"},"sustainable_development_goals":[],"awards":[],"funders":[{"id":"https://openalex.org/F4320321108","display_name":"Academy of Finland","ror":"https://ror.org/05k73zm37"},{"id":"https://openalex.org/F4320322725","display_name":"China Scholarship Council","ror":"https://ror.org/04atp4p48"}],"has_content":{"pdf":true,"grobid_xml":true},"content_urls":{"pdf":"https://content.openalex.org/works/W2108791029.pdf","grobid_xml":"https://content.openalex.org/works/W2108791029.grobid-xml"},"referenced_works_count":47,"referenced_works":["https://openalex.org/W5557833","https://openalex.org/W76749362","https://openalex.org/W97427318","https://openalex.org/W122290181","https://openalex.org/W136394213","https://openalex.org/W154351976","https://openalex.org/W165790511","https://openalex.org/W174568167","https://openalex.org/W1508977358","https://openalex.org/W1509982784","https://openalex.org/W1630427015","https://openalex.org/W1757434866","https://openalex.org/W1796991281","https://openalex.org/W1934889228","https://openalex.org/W1947689409","https://openalex.org/W2003185534","https://openalex.org/W2022009488","https://openalex.org/W2032566933","https://openalex.org/W2038037963","https://openalex.org/W2038721957","https://openalex.org/W2052947212","https://openalex.org/W2056478778","https://openalex.org/W2075655036","https://openalex.org/W2094061585","https://openalex.org/W2098162425","https://openalex.org/W2105842272","https://openalex.org/W2107530479","https://openalex.org/W2108706252","https://openalex.org/W2121075355","https://openalex.org/W2125712079","https://openalex.org/W2129769245","https://openalex.org/W2136449704","https://openalex.org/W2145107779","https://openalex.org/W2155598164","https://openalex.org/W2165372747","https://openalex.org/W2166111585","https://openalex.org/W2250232417","https://openalex.org/W2250892234","https://openalex.org/W2251236846","https://openalex.org/W2289614966","https://openalex.org/W2552843868","https://openalex.org/W2781804600","https://openalex.org/W2801356492","https://openalex.org/W2914431807","https://openalex.org/W2914463643","https://openalex.org/W2923652028","https://openalex.org/W4285719527"],"related_works":["https://openalex.org/W178231042","https://openalex.org/W2360028903","https://openalex.org/W4280543773","https://openalex.org/W2366083136","https://openalex.org/W2387622493","https://openalex.org/W2808360891","https://openalex.org/W330397256","https://openalex.org/W2916147465","https://openalex.org/W1757434866","https://openalex.org/W2251431888"],"abstract_inverted_index":{"BACKGROUND:":[0],"We":[1,154,203,254],"present":[2],"a":[3,28,198,248],"system":[4,29,55,85,102,127,162,188],"for":[5,18,89,167,268],"extracting":[6],"biomedical":[7,52],"events":[8,88],"(detailed":[9],"descriptions":[10],"of":[11,39,47,79,111,160,187,200,231,258],"biomolecular":[12],"interactions)":[13],"from":[14,133],"research":[15],"articles,":[16],"developed":[17],"the":[19,37,40,45,95,100,121,126,129,143,156,161,185,206,232,236],"BioNLP'11":[20,41,96],"Shared":[21,42,59,97,122,241],"Task.":[22],"Our":[23,54,83],"goal":[24],"is":[25,246],"to":[26,32,50,71,103,135,179,216],"develop":[27],"easily":[30,213],"adaptable":[31],"different":[33],"event":[34,48,220,244,259],"schemes,":[35],"following":[36],"theme":[38],"Task:":[43],"generalization,":[44],"extension":[46],"extraction":[49,221,245,260],"varied":[51],"domains.":[53],"extends":[56],"our":[57],"BioNLP'09":[58],"Task":[60],"winning":[61],"Turku":[62,208],"Event":[63,146,209],"Extraction":[64,147,210],"System,":[65],"which":[66],"uses":[67],"support":[68],"vector":[69],"machines":[70],"first":[72],"detect":[73],"event-defining":[74],"words,":[75],"followed":[76],"by":[77,163],"detection":[78],"their":[80,112],"relationships.":[81],"RESULTS:":[82],"current":[84],"successfully":[86],"predicts":[87],"every":[90],"domain":[91],"case":[92],"introduced":[93],"in":[94,105,117,197,226],"Task,":[98,123],"being":[99],"only":[101],"participate":[104],"all":[106,110,168,217],"eight":[107],"tasks":[108],"and":[109,148,150,238,262],"subtasks,":[113],"with":[114,142,223],"best":[115],"performance":[116,139,159,225,233],"four":[118],"tasks.":[119,153,228],"Following":[120],"we":[124,183],"improve":[125,180],"on":[128,190],"Infectious":[130],"Diseases":[131],"task":[132],"42.57%":[134],"53.87%":[136],"F-score,":[137],"bringing":[138],"into":[140],"line":[141],"similar":[144],"GENIA":[145],"Epigenetics":[149],"Post-translational":[151],"Modifications":[152],"evaluate":[155,184],"machine":[157],"learning":[158,165],"calculating":[164],"curves":[166],"tasks,":[169],"detecting":[170],"areas":[171],"where":[172],"additional":[173,194],"annotated":[174],"data":[175,196],"could":[176],"be":[177,214],"used":[178],"performance.":[181],"Finally,":[182],"use":[186],"output":[189],"external":[191],"articles":[192],"as":[193],"training":[195],"form":[199],"self-training.":[201],"CONCLUSIONS:":[202],"show":[204],"that":[205],"updated":[207],"System":[211],"can":[212],"adapted":[215],"presently":[218],"available":[219],"targets,":[222],"competitive":[224],"most":[227],"The":[229],"scope":[230],"gains":[234],"between":[235],"2009":[237],"2011":[239],"BioNLP":[240],"Tasks":[242],"indicates":[243],"still":[247],"new":[249],"field":[250],"requiring":[251],"more":[252],"work.":[253],"provide":[255],"several":[256],"analyses":[257],"methods":[261],"performance,":[263],"highlighting":[264],"potential":[265],"future":[266],"directions":[267],"continued":[269],"development.":[270]},"counts_by_year":[{"year":2024,"cited_by_count":2},{"year":2023,"cited_by_count":1},{"year":2021,"cited_by_count":1},{"year":2020,"cited_by_count":3},{"year":2019,"cited_by_count":4},{"year":2018,"cited_by_count":4},{"year":2017,"cited_by_count":4},{"year":2016,"cited_by_count":11},{"year":2015,"cited_by_count":11},{"year":2014,"cited_by_count":8},{"year":2013,"cited_by_count":14},{"year":2012,"cited_by_count":4}],"updated_date":"2026-06-15T08:34:33.830935","created_date":"2025-10-10T00:00:00"}
